Wall clock time and date at job start Tue Mar 31 2020 16:32:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42903 * 109.47008 * 2 1 4 4 C 1.35745 * 116.99840 * 180.02562 * 3 2 1 5 5 N 1.32143 * 119.72769 * 359.97438 * 4 3 2 6 6 C 1.32002 * 121.72155 * 180.02562 * 5 4 3 7 7 C 1.38080 * 120.97669 * 0.02562 * 6 5 4 8 8 C 1.38737 * 119.34880 * 359.95436 * 7 6 5 9 9 C 1.38980 * 118.42421 * 0.04627 * 8 7 6 10 10 N 1.40047 * 120.50714 * 180.25052 * 9 8 7 11 11 C 1.34772 * 120.00078 * 325.85190 * 10 9 8 12 12 O 1.21611 * 119.99865 * 4.25437 * 11 10 9 13 13 C 1.47506 * 120.00021 * 184.24861 * 11 10 9 14 14 C 1.39684 * 120.19842 * 0.02562 * 13 11 10 15 15 C 1.37823 * 119.91448 * 179.97438 * 14 13 11 16 16 C 1.38565 * 120.33255 * 0.02562 * 15 14 13 17 17 C 1.38033 * 120.40276 * 359.97438 * 16 15 14 18 18 C 1.38833 * 120.07063 * 359.74814 * 17 16 15 19 19 O 1.35519 * 120.16435 * 180.27179 * 18 17 16 20 20 C 1.34811 * 116.99986 * 5.60972 * 19 18 17 21 21 H 1.08006 * 120.00201 * 354.92172 * 20 19 18 22 22 C 1.38702 * 120.00559 * 174.92648 * 20 19 18 23 23 N 1.31511 * 120.00315 * 179.97438 * 22 20 19 24 24 Si 1.86805 * 119.99525 * 359.97438 * 22 20 19 25 25 H 1.48499 * 109.46718 * 90.00193 * 24 22 20 26 26 H 1.48498 * 109.46959 * 210.00043 * 24 22 20 27 27 H 1.48496 * 109.47238 * 330.00301 * 24 22 20 28 28 H 1.09004 * 109.47455 * 59.99336 * 1 2 3 29 29 H 1.08995 * 109.47403 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47241 * 299.99841 * 1 2 3 31 31 H 1.09001 * 109.46812 * 240.00439 * 2 1 3 32 32 H 1.08998 * 109.47263 * 119.99996 * 2 1 3 33 33 H 1.08001 * 119.51472 * 180.02562 * 6 5 4 34 34 H 1.08000 * 120.32545 * 179.97438 * 7 6 5 35 35 H 1.08000 * 120.78756 * 180.02562 * 8 7 6 36 36 H 0.96999 * 119.99645 * 145.86204 * 10 9 8 37 37 H 1.07998 * 120.03897 * 359.97438 * 14 13 11 38 38 H 1.08001 * 119.83231 * 179.97438 * 15 14 13 39 39 H 1.08001 * 119.80586 * 179.97438 * 16 15 14 40 40 H 1.07996 * 119.96576 * 179.97438 * 17 16 15 41 41 H 0.97001 * 120.00102 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3521 1.5252 -0.0005 5 7 4.1520 0.4734 -0.0005 6 6 5.4659 0.6007 -0.0005 7 6 6.0591 1.8476 0.0000 8 6 5.2592 2.9811 -0.0005 9 6 3.8791 2.8169 -0.0004 10 7 3.0306 3.9311 -0.0061 11 6 3.3904 5.0555 0.6439 12 8 4.4844 5.1302 1.1698 13 6 2.4574 6.1956 0.7173 14 6 1.1997 6.1142 0.1150 15 6 0.3324 7.1828 0.1877 16 6 0.7015 8.3395 0.8553 17 6 1.9410 8.4345 1.4553 18 6 2.8256 7.3661 1.3973 19 8 4.0409 7.4553 1.9904 20 6 4.2863 8.5624 2.7194 21 1 3.5636 9.3646 2.7432 22 6 5.4672 8.6715 3.4388 23 7 5.7068 9.7517 4.1495 24 14 6.7171 7.2838 3.3981 25 1 7.6684 7.5072 2.2799 26 1 7.4618 7.2506 4.6824 27 1 6.0147 5.9906 3.1995 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 6.0861 -0.2835 -0.0009 34 1 7.1352 1.9395 0.0004 35 1 5.6985 3.9677 -0.0005 36 1 2.1839 3.8934 -0.4779 37 1 0.9074 5.2150 -0.4068 38 1 -0.6396 7.1185 -0.2788 39 1 0.0153 9.1719 0.9067 40 1 2.2215 9.3396 1.9734 41 1 6.5325 9.8278 4.6529 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194190850.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:32:16 Heat of formation + Delta-G solvation = -48.834490 kcal Electronic energy + Delta-G solvation = -27415.951382 eV Core-core repulsion = 23454.740372 eV Total energy + Delta-G solvation = -3961.211010 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 2.34 seconds Orbital eigenvalues (eV) -42.17772 -41.24164 -40.01139 -38.92340 -38.20437 -36.12621 -34.53592 -33.19825 -32.86587 -31.84398 -30.83781 -30.09853 -27.33976 -25.76447 -25.03502 -23.93041 -23.33655 -22.81177 -21.64672 -19.98811 -19.83970 -19.41675 -18.51833 -18.08504 -17.52277 -17.19686 -16.68550 -16.24815 -16.15011 -15.98048 -15.75819 -15.49773 -15.44500 -14.92024 -14.84713 -14.72680 -14.30331 -14.22417 -14.05951 -13.49426 -13.32242 -13.28098 -13.14935 -12.85200 -12.62746 -12.44843 -12.43149 -12.03885 -11.97918 -11.68902 -11.56380 -11.14655 -10.98192 -10.64469 -10.29705 -9.95688 -9.22650 -9.00115 -8.59061 -6.28356 -0.17860 0.17145 0.20946 0.61965 1.25166 1.29359 1.57743 1.83946 1.92497 1.97494 2.28441 2.70438 2.77330 2.96027 3.13472 3.36240 3.68881 3.82759 3.97050 4.06615 4.12350 4.13523 4.21318 4.26366 4.40523 4.44718 4.49124 4.56500 4.76426 4.82335 4.90695 4.98952 5.02329 5.13135 5.24728 5.25933 5.26200 5.44711 5.54447 5.58342 5.66946 5.81147 6.11890 6.20620 6.37497 6.74356 6.77264 7.15806 7.54967 8.51108 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.011617 B = 0.004303 C = 0.003292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2409.687452 B = 6505.749373 C = 8502.541884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.064 3.936 3 O -0.316 6.316 4 C 0.293 3.707 5 N -0.529 5.529 6 C 0.120 3.880 7 C -0.185 4.185 8 C -0.073 4.073 9 C 0.069 3.931 10 N -0.649 5.649 11 C 0.557 3.443 12 O -0.548 6.548 13 C -0.234 4.234 14 C -0.030 4.030 15 C -0.187 4.187 16 C -0.037 4.037 17 C -0.249 4.249 18 C 0.167 3.833 19 O -0.207 6.207 20 C -0.403 4.403 21 H 0.093 0.907 22 C 0.027 3.973 23 N -0.910 5.910 24 Si 0.953 3.047 25 H -0.272 1.272 26 H -0.269 1.269 27 H -0.263 1.263 28 H 0.070 0.930 29 H 0.100 0.900 30 H 0.060 0.940 31 H 0.069 0.931 32 H 0.059 0.941 33 H 0.201 0.799 34 H 0.165 0.835 35 H 0.132 0.868 36 H 0.423 0.577 37 H 0.161 0.839 38 H 0.168 0.832 39 H 0.154 0.846 40 H 0.118 0.882 41 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.288 -19.260 -12.459 25.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.011 4.011 3 O -0.224 6.224 4 C 0.111 3.889 5 N -0.253 5.253 6 C -0.035 4.035 7 C -0.205 4.205 8 C -0.100 4.100 9 C -0.028 4.028 10 N -0.297 5.297 11 C 0.349 3.651 12 O -0.426 6.426 13 C -0.239 4.239 14 C -0.048 4.048 15 C -0.205 4.205 16 C -0.055 4.055 17 C -0.268 4.268 18 C 0.114 3.886 19 O -0.111 6.111 20 C -0.479 4.479 21 H 0.110 0.890 22 C -0.174 4.174 23 N -0.550 5.550 24 Si 0.777 3.223 25 H -0.197 1.197 26 H -0.194 1.194 27 H -0.187 1.187 28 H 0.089 0.911 29 H 0.118 0.882 30 H 0.079 0.921 31 H 0.088 0.912 32 H 0.077 0.923 33 H 0.217 0.783 34 H 0.183 0.817 35 H 0.150 0.850 36 H 0.263 0.737 37 H 0.178 0.822 38 H 0.185 0.815 39 H 0.171 0.829 40 H 0.136 0.864 41 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -9.817 -19.838 -11.912 25.136 hybrid contribution 0.964 1.009 0.345 1.437 sum -8.854 -18.829 -11.567 23.806 Atomic orbital electron populations 1.21841 0.90975 1.04280 1.03385 1.22812 0.96199 0.79764 1.02340 1.86183 1.15731 1.32476 1.87989 1.19565 0.85175 0.88128 0.96000 1.67413 1.07486 1.31169 1.19267 1.22980 0.88716 0.98418 0.93387 1.22249 1.02667 0.91922 1.03680 1.21761 0.91483 1.01346 0.95451 1.17886 0.91064 0.85253 1.08598 1.42998 1.23012 1.10654 1.53050 1.18531 0.86706 0.82642 0.77202 1.90831 1.23478 1.81688 1.46563 1.19067 0.98546 0.93081 1.13220 1.21337 0.89572 0.99745 0.94176 1.21227 1.01807 0.93029 1.04486 1.21482 0.93514 0.98782 0.91768 1.21345 0.97126 0.99407 1.08945 1.19684 0.84805 0.93509 0.90619 1.83747 1.28937 1.40847 1.57563 1.20899 1.06517 0.94646 1.25868 0.88961 1.25049 0.98850 0.99221 0.94249 1.69678 1.27334 1.28088 1.29901 0.85440 0.78662 0.80586 0.77641 1.19705 1.19371 1.18698 0.91092 0.88166 0.92083 0.91224 0.92276 0.78270 0.81733 0.84981 0.73692 0.82176 0.81453 0.82864 0.86430 0.90427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 10.28 71.98 0.74 -1.06 16 2 C 0.06 1.14 6.03 71.98 0.43 1.58 16 3 O -0.32 -7.71 9.68 -90.70 -0.88 -8.59 16 4 C 0.29 8.18 7.51 84.95 0.64 8.82 16 5 N -0.53 -13.26 9.21 -308.45 -2.84 -16.11 16 6 C 0.12 2.51 11.17 84.63 0.95 3.45 16 7 C -0.18 -4.40 10.10 22.35 0.23 -4.18 16 8 C -0.07 -2.33 8.82 22.57 0.20 -2.13 16 9 C 0.07 2.20 6.35 38.31 0.24 2.44 16 10 N -0.65 -20.45 5.15 -305.67 -1.57 -22.02 16 11 C 0.56 22.78 7.62 86.69 0.66 23.44 16 12 O -0.55 -27.50 12.45 16.83 0.21 -27.29 16 13 C -0.23 -9.24 5.89 -19.99 -0.12 -9.36 16 14 C -0.03 -0.82 9.53 22.52 0.21 -0.61 16 15 C -0.19 -4.59 10.02 22.25 0.22 -4.36 16 16 C -0.04 -1.11 10.03 22.30 0.22 -0.89 16 17 C -0.25 -10.40 9.16 22.36 0.20 -10.20 16 18 C 0.17 7.99 6.66 22.91 0.15 8.15 16 19 O -0.21 -11.87 6.67 0.88 0.01 -11.87 16 20 C -0.40 -24.35 9.95 67.93 0.68 -23.67 16 21 H 0.09 5.63 5.44 -2.91 -0.02 5.61 16 22 C 0.03 1.61 5.49 84.85 0.47 2.08 16 23 N -0.91 -55.33 13.96 21.62 0.30 -55.03 16 24 Si 0.95 49.97 28.62 68.60 1.96 51.93 16 25 H -0.27 -13.88 7.11 99.48 0.71 -13.17 16 26 H -0.27 -13.03 7.11 99.48 0.71 -12.32 16 27 H -0.26 -14.80 6.95 99.48 0.69 -14.11 16 28 H 0.07 0.79 8.14 -2.38 -0.02 0.77 16 29 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.06 0.82 8.14 -2.38 -0.02 0.80 16 31 H 0.07 1.17 8.11 -2.39 -0.02 1.15 16 32 H 0.06 1.12 8.11 -2.39 -0.02 1.10 16 33 H 0.20 2.40 8.06 -2.91 -0.02 2.38 16 34 H 0.17 2.95 8.06 -2.91 -0.02 2.93 16 35 H 0.13 4.98 6.25 -2.91 -0.02 4.96 16 36 H 0.42 10.24 6.61 -92.71 -0.61 9.63 16 37 H 0.16 2.96 6.41 -2.91 -0.02 2.94 16 38 H 0.17 2.55 8.06 -2.91 -0.02 2.52 16 39 H 0.15 3.43 8.06 -2.91 -0.02 3.41 16 40 H 0.12 5.37 5.64 -2.91 -0.02 5.35 16 41 H 0.29 16.01 8.31 -92.71 -0.77 15.24 16 Total: -1.00 -79.31 353.06 3.78 -75.53 By element: Atomic # 1 Polarization: 19.49 SS G_CDS: 0.46 Total: 19.95 kcal Atomic # 6 Polarization: -12.64 SS G_CDS: 6.13 Total: -6.51 kcal Atomic # 7 Polarization: -89.04 SS G_CDS: -4.11 Total: -93.16 kcal Atomic # 8 Polarization: -47.09 SS G_CDS: -0.66 Total: -47.75 kcal Atomic # 14 Polarization: 49.97 SS G_CDS: 1.96 Total: 51.93 kcal Total: -79.31 3.78 -75.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194190850.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.700 kcal (2) G-P(sol) polarization free energy of solvation -79.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.34 seconds