Wall clock time and date at job start Tue Mar 31 2020 16:12:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.46957 * 2 1 4 4 C 1.50703 * 109.47390 * 240.00278 * 2 1 3 5 5 H 1.08003 * 119.99917 * 240.00342 * 4 2 1 6 6 C 1.37874 * 119.99750 * 59.99538 * 4 2 1 7 7 N 1.31517 * 120.00515 * 0.02562 * 6 4 2 8 8 Si 1.86807 * 119.99875 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.46799 * 60.00549 * 8 6 4 10 10 H 1.48498 * 109.47072 * 180.02562 * 8 6 4 11 11 H 1.48501 * 109.47236 * 300.00570 * 8 6 4 12 12 N 1.46498 * 109.47092 * 119.99929 * 2 1 3 13 13 C 1.34774 * 120.00099 * 274.99794 * 12 2 1 14 14 O 1.21547 * 120.00141 * 0.02562 * 13 12 2 15 15 C 1.47863 * 119.99828 * 179.72375 * 13 12 2 16 16 C 1.39626 * 120.11094 * 0.02562 * 15 13 12 17 17 C 1.37978 * 120.00134 * 179.78890 * 16 15 13 18 18 C 1.38251 * 120.22441 * 0.46570 * 17 16 15 19 19 C 1.38967 * 120.22332 * 359.79154 * 18 17 16 20 20 N 1.39857 * 120.00540 * 179.97438 * 19 18 17 21 21 C 1.34775 * 120.00206 * 213.40455 * 20 19 18 22 22 O 1.21709 * 120.00238 * 5.27740 * 21 20 19 23 23 C 1.46622 * 119.99954 * 185.27698 * 21 20 19 24 24 C 1.36568 * 125.98720 * 179.71652 * 23 21 20 25 25 C 1.40363 * 106.70599 * 179.90768 * 24 23 21 26 26 C 1.35130 * 107.11383 * 0.35503 * 25 24 23 27 27 O 1.33937 * 108.77276 * 359.77579 * 26 25 24 28 28 C 1.38664 * 119.99463 * 359.97438 * 19 18 17 29 29 H 1.09000 * 109.46769 * 300.00161 * 1 2 3 30 30 H 1.09004 * 109.46804 * 59.99655 * 1 2 3 31 31 H 1.08994 * 109.47296 * 180.02562 * 1 2 3 32 32 H 0.96998 * 120.00215 * 179.97438 * 7 6 4 33 33 H 0.97000 * 119.99687 * 95.00231 * 12 2 1 34 34 H 1.08003 * 119.99551 * 359.97438 * 16 15 13 35 35 H 1.07997 * 119.88851 * 180.21498 * 17 16 15 36 36 H 1.08004 * 119.89239 * 179.75992 * 18 17 16 37 37 H 0.96997 * 120.00043 * 33.41035 * 20 19 18 38 38 H 1.07998 * 126.64622 * 0.04033 * 24 23 21 39 39 H 1.07999 * 126.43855 * 180.15339 * 25 24 23 40 40 H 1.08001 * 125.61380 * 179.76065 * 26 25 24 41 41 H 1.07999 * 120.11191 * 180.02562 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9435 0.8303 -2.6034 8 14 2.3214 -1.1202 -4.0080 9 1 1.8258 -2.5201 -4.0078 10 1 1.8269 -0.4197 -5.2204 11 1 3.8064 -1.1208 -4.0082 12 7 2.0183 -0.6906 1.1962 13 6 2.1471 -0.0182 2.3571 14 8 1.8576 1.1610 2.4118 15 6 2.6341 -0.7168 3.5659 16 6 2.9618 -2.0728 3.5070 17 6 3.4203 -2.7213 4.6353 18 6 3.5478 -2.0354 5.8289 19 6 3.2192 -0.6870 5.8993 20 7 3.3495 0.0023 7.1092 21 6 2.4895 0.9936 7.4160 22 8 1.5429 1.2255 6.6869 23 6 2.6942 1.7928 8.6281 24 6 1.9060 2.8245 9.0517 25 6 2.4673 3.2960 10.2488 26 6 3.5640 2.5463 10.4960 27 8 3.6974 1.6416 9.5174 28 6 2.7622 -0.0249 4.7699 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 0.7094 1.1619 -3.4844 33 1 2.2490 -1.6317 1.1526 34 1 2.8593 -2.6132 2.5776 35 1 3.6765 -3.7694 4.5869 36 1 3.9035 -2.5494 6.7097 37 1 4.0588 -0.2330 7.7275 38 1 1.0209 3.2028 8.5619 39 1 2.0947 4.1076 10.8560 40 1 4.2245 2.6583 11.3432 41 1 2.5067 1.0231 4.8224 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194748147.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:12:10 Heat of formation + Delta-G solvation = -22.198011 kcal Electronic energy + Delta-G solvation = -26311.602822 eV Core-core repulsion = 22351.546857 eV Total energy + Delta-G solvation = -3960.055966 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -43.08860 -40.64229 -39.21517 -37.79826 -35.08674 -34.77108 -33.46493 -32.41905 -31.08227 -30.93942 -29.41585 -28.45067 -25.22584 -24.43920 -23.92764 -22.36869 -21.99571 -21.06976 -20.53339 -19.52267 -18.95606 -18.17599 -16.77992 -16.73378 -16.47231 -16.22250 -15.66044 -15.28933 -15.03239 -14.84034 -14.32680 -14.12900 -13.94119 -13.77565 -13.41745 -13.37740 -13.09350 -13.03204 -12.65779 -12.40143 -11.87145 -11.67012 -11.57574 -11.06964 -10.94109 -10.75648 -10.65314 -10.47508 -10.32422 -10.29734 -10.19576 -9.15601 -9.10118 -9.01370 -8.89216 -8.51837 -8.28180 -7.86427 -6.08831 -4.18364 0.56401 1.01561 1.35506 1.96899 2.22971 2.76546 2.80489 3.27853 3.32927 3.33967 3.35357 4.03460 4.20226 4.25364 4.40262 4.49421 4.60626 4.83466 4.90663 5.18837 5.20752 5.23096 5.29288 5.36054 5.42648 5.50287 5.53007 5.87765 5.90470 6.09791 6.21468 6.36638 6.40986 6.50243 6.86736 6.90975 7.03110 7.05239 7.19791 7.49226 7.60176 7.69716 7.73228 7.95717 8.18561 8.68617 8.80924 9.14217 9.48809 10.97134 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.023011 B = 0.002338 C = 0.002181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.542393 B =11971.907118 C =12837.711919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.264 3.736 3 H 0.050 0.950 4 C -0.534 4.534 5 H 0.061 0.939 6 C 0.066 3.934 7 N -0.883 5.883 8 Si 0.903 3.097 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.276 1.276 12 N -0.701 5.701 13 C 0.541 3.459 14 O -0.545 6.545 15 C -0.100 4.100 16 C -0.100 4.100 17 C -0.108 4.108 18 C -0.127 4.127 19 C 0.130 3.870 20 N -0.663 5.663 21 C 0.600 3.400 22 O -0.486 6.486 23 C -0.081 4.081 24 C -0.112 4.112 25 C -0.224 4.224 26 C -0.005 4.005 27 O -0.166 6.166 28 C -0.066 4.066 29 H 0.016 0.984 30 H 0.091 0.909 31 H 0.027 0.973 32 H 0.265 0.735 33 H 0.388 0.612 34 H 0.132 0.868 35 H 0.132 0.868 36 H 0.127 0.873 37 H 0.414 0.586 38 H 0.164 0.836 39 H 0.159 0.841 40 H 0.212 0.788 41 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.423 -3.344 26.748 27.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.162 3.838 3 H 0.068 0.932 4 C -0.572 4.572 5 H 0.079 0.921 6 C -0.137 4.137 7 N -0.520 5.520 8 Si 0.730 3.270 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.202 1.202 12 N -0.349 5.349 13 C 0.326 3.674 14 O -0.424 6.424 15 C -0.104 4.104 16 C -0.119 4.119 17 C -0.126 4.126 18 C -0.148 4.148 19 C 0.037 3.963 20 N -0.308 5.308 21 C 0.387 3.613 22 O -0.360 6.360 23 C -0.133 4.133 24 C -0.133 4.133 25 C -0.243 4.243 26 C -0.074 4.074 27 O -0.061 6.061 28 C -0.087 4.087 29 H 0.035 0.965 30 H 0.109 0.891 31 H 0.046 0.954 32 H 0.075 0.925 33 H 0.222 0.778 34 H 0.150 0.850 35 H 0.150 0.850 36 H 0.145 0.855 37 H 0.251 0.749 38 H 0.181 0.819 39 H 0.176 0.824 40 H 0.228 0.772 41 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 6.648 -2.375 26.038 26.978 hybrid contribution 0.681 -0.846 -0.335 1.136 sum 7.329 -3.221 25.704 26.921 Atomic orbital electron populations 1.22081 0.98328 0.99186 1.01019 1.18784 0.91137 0.94060 0.79780 0.93217 1.21167 1.32527 1.13249 0.90291 0.92103 1.24893 0.94827 0.94975 0.99043 1.69897 1.35769 1.22377 1.23976 0.86496 0.79137 0.79566 0.81800 1.20160 1.21150 1.20188 1.46475 1.64567 1.13514 1.10338 1.18178 0.79093 0.86855 0.83317 1.90741 1.51051 1.15645 1.85001 1.20213 1.01328 0.94174 0.94656 1.21434 0.97702 0.93662 0.99135 1.20856 0.99839 0.99977 0.91937 1.20956 1.03187 0.91668 0.98973 1.17527 1.02678 0.91187 0.84942 1.43253 1.32724 1.35106 1.19697 1.16627 0.82384 0.79510 0.82802 1.91014 1.29130 1.67282 1.48604 1.21900 0.93140 1.03542 0.94716 1.22079 1.00626 0.94796 0.95788 1.21911 0.98423 1.04557 0.99435 1.24450 0.99915 0.90326 0.92743 1.84046 1.43575 1.48961 1.29554 1.21258 0.96598 1.01429 0.89422 0.96513 0.89077 0.95426 0.92512 0.77844 0.85025 0.85009 0.85487 0.74909 0.81867 0.82373 0.77166 0.83486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.82 9.26 37.16 0.34 -3.48 16 2 C 0.26 6.96 2.56 -69.08 -0.18 6.78 16 3 H 0.05 1.51 7.58 -51.93 -0.39 1.11 16 4 C -0.53 -14.38 8.73 -34.44 -0.30 -14.68 16 5 H 0.06 1.55 7.74 -52.48 -0.41 1.14 16 6 C 0.07 1.80 5.30 -17.82 -0.09 1.70 16 7 N -0.88 -25.27 11.32 55.43 0.63 -24.64 16 8 Si 0.90 20.83 29.54 -169.99 -5.02 15.81 16 9 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 10 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 12 N -0.70 -15.43 5.02 -55.87 -0.28 -15.71 16 13 C 0.54 11.95 7.74 -12.32 -0.10 11.85 16 14 O -0.55 -14.27 16.01 5.32 0.09 -14.19 16 15 C -0.10 -1.75 5.87 -104.99 -0.62 -2.37 16 16 C -0.10 -1.36 9.54 -39.16 -0.37 -1.74 16 17 C -0.11 -1.16 10.02 -39.67 -0.40 -1.55 16 18 C -0.13 -1.33 9.95 -39.31 -0.39 -1.72 16 19 C 0.13 1.70 6.27 -83.77 -0.53 1.18 16 20 N -0.66 -7.24 5.33 -11.09 -0.06 -7.30 16 21 C 0.60 7.82 7.52 -12.88 -0.10 7.73 16 22 O -0.49 -8.33 14.55 5.18 0.08 -8.26 16 23 C -0.08 -0.86 7.13 -36.80 -0.26 -1.12 16 24 C -0.11 -1.09 10.62 -39.39 -0.42 -1.51 16 25 C -0.22 -1.52 10.87 -39.89 -0.43 -1.96 16 26 C 0.00 -0.03 12.08 29.63 0.36 0.33 16 27 O -0.17 -1.37 10.41 5.00 0.05 -1.32 16 28 C -0.07 -1.13 8.20 -38.97 -0.32 -1.44 16 29 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.09 2.53 6.07 -51.93 -0.32 2.21 16 31 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.26 7.19 8.31 -40.82 -0.34 6.86 16 33 H 0.39 7.27 6.57 -40.82 -0.27 7.00 16 34 H 0.13 1.60 6.40 -52.48 -0.34 1.26 16 35 H 0.13 1.01 8.06 -52.49 -0.42 0.58 16 36 H 0.13 0.91 8.06 -52.48 -0.42 0.48 16 37 H 0.41 3.08 8.58 -40.82 -0.35 2.73 16 38 H 0.16 1.55 8.06 -52.49 -0.42 1.13 16 39 H 0.16 0.68 8.06 -52.49 -0.42 0.26 16 40 H 0.21 0.27 8.06 -52.49 -0.42 -0.15 16 41 H 0.15 2.88 6.00 -52.49 -0.32 2.56 16 LS Contribution 358.98 15.07 5.41 5.41 Total: -1.00 -35.33 358.98 -7.39 -42.72 By element: Atomic # 1 Polarization: 13.95 SS G_CDS: -4.48 Total: 9.47 kcal Atomic # 6 Polarization: 1.80 SS G_CDS: -3.80 Total: -2.00 kcal Atomic # 7 Polarization: -47.94 SS G_CDS: 0.29 Total: -47.65 kcal Atomic # 8 Polarization: -23.97 SS G_CDS: 0.21 Total: -23.76 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -35.33 -7.39 -42.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194748147.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.521 kcal (2) G-P(sol) polarization free energy of solvation -35.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds