Wall clock time and date at job start Tue Mar 31 2020 16:12:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.46957 * 2 1 4 4 C 1.50703 * 109.47390 * 240.00278 * 2 1 3 5 5 H 1.08003 * 119.99917 * 240.00342 * 4 2 1 6 6 C 1.37874 * 119.99750 * 59.99538 * 4 2 1 7 7 N 1.31517 * 120.00515 * 0.02562 * 6 4 2 8 8 Si 1.86807 * 119.99875 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.46799 * 60.00549 * 8 6 4 10 10 H 1.48498 * 109.47072 * 180.02562 * 8 6 4 11 11 H 1.48501 * 109.47236 * 300.00570 * 8 6 4 12 12 N 1.46498 * 109.47092 * 119.99929 * 2 1 3 13 13 C 1.34774 * 120.00099 * 274.99794 * 12 2 1 14 14 O 1.21547 * 120.00141 * 0.02562 * 13 12 2 15 15 C 1.47863 * 119.99828 * 179.72375 * 13 12 2 16 16 C 1.39626 * 120.11094 * 0.02562 * 15 13 12 17 17 C 1.37978 * 120.00134 * 179.78890 * 16 15 13 18 18 C 1.38251 * 120.22441 * 0.46570 * 17 16 15 19 19 C 1.38967 * 120.22332 * 359.79154 * 18 17 16 20 20 N 1.39857 * 120.00540 * 179.97438 * 19 18 17 21 21 C 1.34775 * 120.00206 * 213.40455 * 20 19 18 22 22 O 1.21709 * 120.00238 * 5.27740 * 21 20 19 23 23 C 1.46622 * 119.99954 * 185.27698 * 21 20 19 24 24 C 1.36568 * 125.98720 * 179.71652 * 23 21 20 25 25 C 1.40363 * 106.70599 * 179.90768 * 24 23 21 26 26 C 1.35130 * 107.11383 * 0.35503 * 25 24 23 27 27 O 1.33937 * 108.77276 * 359.77579 * 26 25 24 28 28 C 1.38664 * 119.99463 * 359.97438 * 19 18 17 29 29 H 1.09000 * 109.46769 * 300.00161 * 1 2 3 30 30 H 1.09004 * 109.46804 * 59.99655 * 1 2 3 31 31 H 1.08994 * 109.47296 * 180.02562 * 1 2 3 32 32 H 0.96998 * 120.00215 * 179.97438 * 7 6 4 33 33 H 0.97000 * 119.99687 * 95.00231 * 12 2 1 34 34 H 1.08003 * 119.99551 * 359.97438 * 16 15 13 35 35 H 1.07997 * 119.88851 * 180.21498 * 17 16 15 36 36 H 1.08004 * 119.89239 * 179.75992 * 18 17 16 37 37 H 0.96997 * 120.00043 * 33.41035 * 20 19 18 38 38 H 1.07998 * 126.64622 * 0.04033 * 24 23 21 39 39 H 1.07999 * 126.43855 * 180.15339 * 25 24 23 40 40 H 1.08001 * 125.61380 * 179.76065 * 26 25 24 41 41 H 1.07999 * 120.11191 * 180.02562 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9435 0.8303 -2.6034 8 14 2.3214 -1.1202 -4.0080 9 1 1.8258 -2.5201 -4.0078 10 1 1.8269 -0.4197 -5.2204 11 1 3.8064 -1.1208 -4.0082 12 7 2.0183 -0.6906 1.1962 13 6 2.1471 -0.0182 2.3571 14 8 1.8576 1.1610 2.4118 15 6 2.6341 -0.7168 3.5659 16 6 2.9618 -2.0728 3.5070 17 6 3.4203 -2.7213 4.6353 18 6 3.5478 -2.0354 5.8289 19 6 3.2192 -0.6870 5.8993 20 7 3.3495 0.0023 7.1092 21 6 2.4895 0.9936 7.4160 22 8 1.5429 1.2255 6.6869 23 6 2.6942 1.7928 8.6281 24 6 1.9060 2.8245 9.0517 25 6 2.4673 3.2960 10.2488 26 6 3.5640 2.5463 10.4960 27 8 3.6974 1.6416 9.5174 28 6 2.7622 -0.0249 4.7699 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 0.7094 1.1619 -3.4844 33 1 2.2490 -1.6317 1.1526 34 1 2.8593 -2.6132 2.5776 35 1 3.6765 -3.7694 4.5869 36 1 3.9035 -2.5494 6.7097 37 1 4.0588 -0.2330 7.7275 38 1 1.0209 3.2028 8.5619 39 1 2.0947 4.1076 10.8560 40 1 4.2245 2.6583 11.3432 41 1 2.5067 1.0231 4.8224 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194748147.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:12:09 Heat of formation + Delta-G solvation = -48.098893 kcal Electronic energy + Delta-G solvation = -26312.725969 eV Core-core repulsion = 22351.546857 eV Total energy + Delta-G solvation = -3961.179112 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.72521 -41.72336 -40.71736 -39.11378 -36.78938 -36.14033 -34.39873 -34.10290 -32.37965 -31.84574 -30.76910 -29.84135 -27.37448 -25.41089 -25.25728 -23.18670 -22.85280 -22.70003 -21.40266 -21.24640 -20.00717 -19.43553 -18.16174 -17.62716 -17.43376 -17.24957 -17.18869 -16.94554 -16.28241 -15.99761 -15.94039 -15.63756 -15.22606 -14.86165 -14.64042 -14.46722 -14.17273 -14.01317 -13.89514 -13.67049 -13.60189 -13.01180 -12.92878 -12.84963 -12.77363 -12.70845 -12.29240 -12.15755 -11.79741 -11.39616 -11.15702 -11.11365 -10.90710 -10.60583 -10.09114 -9.82664 -9.76962 -9.27165 -8.17994 -6.36771 -0.29976 -0.08468 0.35700 1.36846 1.45137 1.47466 1.48518 1.56283 1.82814 1.99401 2.03367 2.32144 2.54798 2.87109 3.12148 3.56050 3.78035 3.88764 3.89956 4.04852 4.12333 4.18568 4.39280 4.41688 4.54210 4.68834 4.84112 4.86198 4.87621 4.90143 5.04471 5.12584 5.20033 5.30899 5.35290 5.36687 5.40680 5.56055 5.63396 5.74351 5.84733 5.90374 6.05057 6.22029 6.69310 6.80548 6.87758 7.28724 7.46117 8.88697 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.023011 B = 0.002338 C = 0.002181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.542393 B =11971.907118 C =12837.711919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.269 3.731 3 H -0.004 1.004 4 C -0.547 4.547 5 H 0.078 0.922 6 C 0.011 3.989 7 N -0.919 5.919 8 Si 0.979 3.021 9 H -0.261 1.261 10 H -0.287 1.287 11 H -0.269 1.269 12 N -0.693 5.693 13 C 0.535 3.465 14 O -0.602 6.602 15 C -0.130 4.130 16 C -0.096 4.096 17 C -0.091 4.091 18 C -0.100 4.100 19 C 0.125 3.875 20 N -0.647 5.647 21 C 0.596 3.404 22 O -0.543 6.543 23 C -0.111 4.111 24 C -0.124 4.124 25 C -0.237 4.237 26 C 0.024 3.976 27 O -0.164 6.164 28 C -0.092 4.092 29 H 0.005 0.995 30 H 0.070 0.930 31 H 0.044 0.956 32 H 0.266 0.734 33 H 0.406 0.594 34 H 0.147 0.853 35 H 0.182 0.818 36 H 0.178 0.822 37 H 0.433 0.567 38 H 0.151 0.849 39 H 0.184 0.816 40 H 0.263 0.737 41 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.075 -7.060 29.323 31.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.166 3.834 3 H 0.014 0.986 4 C -0.585 4.585 5 H 0.096 0.904 6 C -0.189 4.189 7 N -0.557 5.557 8 Si 0.803 3.197 9 H -0.185 1.185 10 H -0.213 1.213 11 H -0.194 1.194 12 N -0.342 5.342 13 C 0.323 3.677 14 O -0.486 6.486 15 C -0.134 4.134 16 C -0.116 4.116 17 C -0.109 4.109 18 C -0.120 4.120 19 C 0.031 3.969 20 N -0.293 5.293 21 C 0.385 3.615 22 O -0.422 6.422 23 C -0.163 4.163 24 C -0.145 4.145 25 C -0.255 4.255 26 C -0.046 4.046 27 O -0.060 6.060 28 C -0.113 4.113 29 H 0.024 0.976 30 H 0.089 0.911 31 H 0.063 0.937 32 H 0.075 0.925 33 H 0.243 0.757 34 H 0.165 0.835 35 H 0.199 0.801 36 H 0.195 0.805 37 H 0.274 0.726 38 H 0.169 0.831 39 H 0.201 0.799 40 H 0.279 0.721 41 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 9.351 -6.156 28.657 30.766 hybrid contribution -0.091 0.373 -0.918 0.995 sum 9.260 -5.783 27.739 29.810 Atomic orbital electron populations 1.21912 0.98283 0.99649 0.99436 1.18418 0.91196 0.91955 0.81857 0.98646 1.21482 1.32845 1.13736 0.90432 0.90382 1.25897 0.94803 0.95610 1.02568 1.70066 1.36930 1.23979 1.24770 0.85295 0.78637 0.78706 0.77067 1.18512 1.21259 1.19435 1.46168 1.64551 1.14214 1.09293 1.18984 0.77773 0.86371 0.84535 1.90695 1.53498 1.18368 1.86013 1.19816 1.05051 0.96042 0.92496 1.21657 0.97025 0.91594 1.01279 1.21403 0.97208 1.01910 0.90332 1.21528 0.99840 0.89861 1.00723 1.17648 1.02412 0.92502 0.84303 1.43122 1.32681 1.34335 1.19182 1.16982 0.81824 0.79588 0.83060 1.90987 1.31602 1.68890 1.50688 1.21407 0.95015 1.04533 0.95301 1.22307 1.00336 0.94761 0.97046 1.22238 0.98931 1.05758 0.98593 1.25496 0.99242 0.87737 0.92089 1.84041 1.42601 1.49687 1.29651 1.21037 0.98997 1.00029 0.91266 0.97562 0.91124 0.93699 0.92486 0.75669 0.83501 0.80078 0.80489 0.72626 0.83112 0.79872 0.72129 0.87755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -7.32 9.26 71.98 0.67 -6.65 16 2 C 0.27 14.97 2.56 44.25 0.11 15.08 16 3 H 0.00 -0.29 7.58 -2.39 -0.02 -0.31 16 4 C -0.55 -29.87 8.73 25.60 0.22 -29.65 16 5 H 0.08 3.90 7.74 -2.91 -0.02 3.88 16 6 C 0.01 0.61 5.30 84.65 0.45 1.06 16 7 N -0.92 -54.45 11.32 21.45 0.24 -54.21 16 8 Si 0.98 42.61 29.54 68.60 2.03 44.63 16 9 H -0.26 -10.65 7.11 99.48 0.71 -9.95 16 10 H -0.29 -12.44 7.11 99.48 0.71 -11.73 16 11 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 12 N -0.69 -31.87 5.02 -448.97 -2.25 -34.12 16 13 C 0.54 25.47 7.74 86.79 0.67 26.14 16 14 O -0.60 -34.98 16.01 -3.86 -0.06 -35.04 16 15 C -0.13 -4.77 5.87 -20.10 -0.12 -4.89 16 16 C -0.10 -2.44 9.54 22.54 0.22 -2.22 16 17 C -0.09 -1.50 10.02 22.21 0.22 -1.28 16 18 C -0.10 -1.64 9.95 22.45 0.22 -1.42 16 19 C 0.13 3.19 6.27 38.14 0.24 3.42 16 20 N -0.65 -13.84 5.33 -307.21 -1.64 -15.48 16 21 C 0.60 16.56 7.52 86.43 0.65 17.20 16 22 O -0.54 -20.75 14.55 -4.38 -0.06 -20.82 16 23 C -0.11 -2.41 7.13 24.07 0.17 -2.24 16 24 C -0.12 -2.50 10.62 22.40 0.24 -2.26 16 25 C -0.24 -2.78 10.87 22.07 0.24 -2.54 16 26 C 0.02 0.19 12.08 67.10 0.81 1.00 16 27 O -0.16 -2.38 10.41 -5.04 -0.05 -2.44 16 28 C -0.09 -3.34 8.20 22.66 0.19 -3.16 16 29 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 30 H 0.07 4.14 6.07 -2.38 -0.01 4.13 16 31 H 0.04 2.22 8.14 -2.39 -0.02 2.20 16 32 H 0.27 14.88 8.31 -92.71 -0.77 14.11 16 33 H 0.41 15.25 6.57 -92.71 -0.61 14.64 16 34 H 0.15 3.17 6.40 -2.91 -0.02 3.16 16 35 H 0.18 1.39 8.06 -2.91 -0.02 1.37 16 36 H 0.18 1.26 8.06 -2.91 -0.02 1.24 16 37 H 0.43 5.51 8.58 -92.71 -0.80 4.72 16 38 H 0.15 3.28 8.06 -2.91 -0.02 3.26 16 39 H 0.18 1.12 8.06 -2.91 -0.02 1.09 16 40 H 0.26 -0.82 8.06 -2.91 -0.02 -0.85 16 41 H 0.10 4.66 6.00 -2.91 -0.02 4.65 16 Total: -1.00 -87.73 358.98 3.10 -84.63 By element: Atomic # 1 Polarization: 25.53 SS G_CDS: -0.30 Total: 25.23 kcal Atomic # 6 Polarization: 2.40 SS G_CDS: 5.20 Total: 7.60 kcal Atomic # 7 Polarization: -100.16 SS G_CDS: -3.65 Total: -103.81 kcal Atomic # 8 Polarization: -58.12 SS G_CDS: -0.18 Total: -58.29 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 2.03 Total: 44.63 kcal Total: -87.73 3.10 -84.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194748147.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.536 kcal (2) G-P(sol) polarization free energy of solvation -87.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds