Wall clock time and date at job start Tue Mar 31 2020 14:42:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.41386 * 126.79971 * 2 1 4 4 C 1.35448 * 103.98729 * 180.02562 * 3 2 1 5 5 C 1.50691 * 126.77929 * 179.97438 * 4 3 2 6 6 N 1.46504 * 109.47390 * 90.00230 * 5 4 3 7 7 C 1.34772 * 120.00606 * 180.02562 * 6 5 4 8 8 O 1.21721 * 119.99474 * 359.97438 * 7 6 5 9 9 C 1.46251 * 120.00400 * 180.02562 * 7 6 5 10 10 C 1.35024 * 120.00158 * 173.06793 * 9 7 6 11 11 C 1.46959 * 119.99972 * 348.87015 * 10 9 7 12 12 C 1.40028 * 120.09993 * 311.82228 * 11 10 9 13 13 C 1.37601 * 119.89483 * 179.69965 * 12 11 10 14 14 C 1.39173 * 120.10144 * 0.59067 * 13 12 11 15 15 O 1.35574 * 119.90009 * 179.69756 * 14 13 12 16 16 C 1.34776 * 117.00116 * 185.62203 * 15 14 13 17 17 H 1.08003 * 119.99890 * 354.90199 * 16 15 14 18 18 C 1.38720 * 120.00019 * 174.91044 * 16 15 14 19 19 N 1.31509 * 119.99882 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 120.00131 * 179.97438 * 18 16 15 21 21 H 1.48495 * 109.47027 * 89.99403 * 20 18 16 22 22 H 1.48500 * 109.46996 * 210.00013 * 20 18 16 23 23 H 1.48503 * 109.46944 * 329.99831 * 20 18 16 24 24 C 1.39177 * 120.20436 * 359.68411 * 14 13 12 25 25 C 1.37604 * 120.10114 * 0.02562 * 24 14 13 26 26 O 1.34048 * 106.44419 * 0.24119 * 4 3 2 27 27 N 1.20926 * 111.56534 * 359.56228 * 26 4 3 28 28 H 1.09003 * 109.47410 * 90.00410 * 1 2 3 29 29 H 1.09003 * 109.47107 * 209.99711 * 1 2 3 30 30 H 1.08994 * 109.47767 * 330.00387 * 1 2 3 31 31 H 1.08002 * 128.00420 * 0.03513 * 3 2 1 32 32 H 1.09000 * 109.47561 * 330.00250 * 5 4 3 33 33 H 1.08997 * 109.47533 * 210.00374 * 5 4 3 34 34 H 0.97006 * 119.99664 * 359.97438 * 6 5 4 35 35 H 1.08007 * 119.99914 * 353.06527 * 9 7 6 36 36 H 1.08003 * 119.99777 * 168.59075 * 10 9 7 37 37 H 1.08002 * 120.05239 * 359.97438 * 12 11 10 38 38 H 1.07998 * 119.94517 * 180.26976 * 13 12 11 39 39 H 0.96995 * 119.99826 * 179.97438 * 19 18 16 40 40 H 1.07998 * 119.95042 * 179.97438 * 24 14 13 41 41 H 1.08001 * 120.05290 * 180.02562 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3539 1.1321 0.0000 4 6 3.6024 0.6070 -0.0006 5 6 4.9020 1.3697 -0.0014 6 7 5.3240 1.6171 1.3796 7 6 6.4666 2.2882 1.6252 8 8 7.1483 2.6885 0.6996 9 6 6.8881 2.5346 3.0038 10 6 8.0975 3.0813 3.2526 11 6 9.0852 3.2033 2.1713 12 6 9.3617 2.1066 1.3457 13 6 10.2828 2.2273 0.3306 14 6 10.9481 3.4334 0.1316 15 8 11.8594 3.5459 -0.8659 16 6 12.5527 4.6996 -0.9339 17 1 12.3136 5.5136 -0.2655 18 6 13.5734 4.8417 -1.8626 19 7 13.8647 3.8505 -2.6762 20 14 14.5339 6.4410 -1.9574 21 1 15.7066 6.3687 -1.0492 22 1 14.9995 6.6569 -3.3509 23 1 13.6592 7.5689 -1.5474 24 6 10.6808 4.5244 0.9533 25 6 9.7569 4.4148 1.9672 26 8 3.4537 -0.7252 -0.0063 27 7 2.2868 -1.0423 -0.0005 28 1 -0.3634 -0.0001 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3634 0.8899 0.5137 31 1 2.0708 2.1744 0.0005 32 1 4.7647 2.3211 -0.5152 33 1 5.6656 0.7861 -0.5156 34 1 4.7806 1.2984 2.1172 35 1 6.2321 2.2794 3.8229 36 1 8.3372 3.4330 4.2452 37 1 8.8495 1.1687 1.5027 38 1 10.4935 1.3832 -0.3093 39 1 14.5781 3.9500 -3.3258 40 1 11.1998 5.4582 0.7955 41 1 9.5497 5.2620 2.6041 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000255697950.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:33 Heat of formation + Delta-G solvation = 52.833600 kcal Electronic energy + Delta-G solvation = -25918.819922 eV Core-core repulsion = 21962.017571 eV Total energy + Delta-G solvation = -3956.802351 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -45.29056 -39.78762 -38.73708 -36.64611 -35.36927 -35.04195 -33.09627 -32.27835 -32.00038 -30.12722 -29.08083 -28.40741 -26.86595 -25.37775 -23.49786 -22.95471 -21.78641 -20.99935 -20.66444 -19.40404 -17.97382 -17.95887 -17.67469 -17.08249 -16.65603 -15.89075 -15.28448 -14.97263 -14.57878 -14.54474 -14.18546 -13.96476 -13.78277 -13.64662 -13.54235 -13.42974 -13.27007 -13.07838 -12.88301 -12.59454 -12.50790 -12.19726 -11.70620 -11.50291 -11.34354 -11.01772 -10.69927 -10.63786 -10.42501 -10.40126 -10.04458 -9.51610 -9.39677 -9.22515 -9.12548 -8.71521 -7.98196 -6.89363 -6.45280 -4.01192 0.97333 1.23290 1.81361 2.41078 2.63397 2.63572 3.13999 3.14812 3.19220 3.34133 3.54376 3.79794 3.97477 4.00825 4.60000 4.67636 4.74660 4.90306 5.01055 5.04372 5.13498 5.17655 5.20479 5.29300 5.33548 5.40312 5.47962 5.58158 5.70565 5.72975 5.83789 6.22823 6.25714 6.30110 6.41382 6.56639 6.77702 7.02506 7.11933 7.34526 7.42486 7.50229 7.51161 7.88935 7.91501 8.01241 8.40849 9.00361 9.72467 10.72575 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.019932 B = 0.002154 C = 0.002031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.468034 B =12998.261350 C =13781.628714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.011 3.989 3 C -0.212 4.212 4 C -0.042 4.042 5 C 0.203 3.797 6 N -0.736 5.736 7 C 0.543 3.457 8 O -0.506 6.506 9 C -0.263 4.263 10 C 0.030 3.970 11 C -0.184 4.184 12 C -0.001 4.001 13 C -0.198 4.198 14 C 0.169 3.831 15 O -0.173 6.173 16 C -0.390 4.390 17 H 0.094 0.906 18 C 0.039 3.961 19 N -0.860 5.860 20 Si 0.942 3.058 21 H -0.273 1.273 22 H -0.277 1.277 23 H -0.267 1.267 24 C -0.247 4.247 25 C -0.043 4.043 26 O 0.107 5.893 27 N -0.361 5.361 28 H 0.081 0.919 29 H 0.076 0.924 30 H 0.082 0.918 31 H 0.174 0.826 32 H 0.102 0.898 33 H 0.093 0.907 34 H 0.399 0.601 35 H 0.122 0.878 36 H 0.123 0.877 37 H 0.102 0.898 38 H 0.114 0.886 39 H 0.270 0.730 40 H 0.126 0.874 41 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.485 -3.663 10.095 24.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.147 4.147 3 C -0.234 4.234 4 C -0.106 4.106 5 C 0.079 3.921 6 N -0.392 5.392 7 C 0.333 3.667 8 O -0.381 6.381 9 C -0.284 4.284 10 C 0.010 3.990 11 C -0.185 4.185 12 C -0.020 4.020 13 C -0.217 4.217 14 C 0.114 3.886 15 O -0.075 6.075 16 C -0.466 4.466 17 H 0.111 0.889 18 C -0.166 4.166 19 N -0.494 5.494 20 Si 0.766 3.234 21 H -0.198 1.198 22 H -0.203 1.203 23 H -0.192 1.192 24 C -0.266 4.266 25 C -0.062 4.062 26 O 0.039 5.961 27 N -0.065 5.065 28 H 0.099 0.901 29 H 0.095 0.905 30 H 0.101 0.899 31 H 0.192 0.808 32 H 0.120 0.880 33 H 0.111 0.889 34 H 0.233 0.767 35 H 0.140 0.860 36 H 0.141 0.859 37 H 0.120 0.880 38 H 0.132 0.868 39 H 0.080 0.920 40 H 0.144 0.856 41 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -21.953 -4.891 8.992 24.222 hybrid contribution -0.117 1.491 0.300 1.526 sum -22.070 -3.399 9.292 24.187 Atomic orbital electron populations 1.20176 0.85771 1.03860 1.03524 1.23666 0.99205 0.88772 1.03076 1.22547 0.91038 1.01378 1.08413 1.24499 0.98164 0.83925 1.03988 1.19546 0.88607 0.98311 0.85640 1.45989 1.26115 1.60047 1.07025 1.18498 0.79876 0.77744 0.90581 1.91029 1.52066 1.49168 1.45832 1.22571 0.99247 1.11888 0.94700 1.22364 0.91047 0.87989 0.97560 1.18285 1.03112 0.95752 1.01372 1.20436 0.93174 0.96375 0.91977 1.20011 1.02978 0.96456 1.02272 1.19530 0.89072 0.92982 0.86994 1.83908 1.43887 1.38413 1.41328 1.21385 1.14027 0.90699 1.20498 0.88904 1.25327 0.96594 0.99291 0.95391 1.70022 1.29166 1.31179 1.19044 0.85697 0.79537 0.80075 0.78045 1.19843 1.20254 1.19151 1.20964 1.04927 0.99965 1.00733 1.20717 0.93719 0.95456 0.96276 1.84873 1.21521 1.22670 1.66992 1.73890 0.89343 1.24175 1.19071 0.90055 0.90499 0.89910 0.80807 0.87996 0.88852 0.76743 0.86024 0.85928 0.88022 0.86771 0.91960 0.85640 0.87619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.41 10.47 36.00 0.38 -0.03 16 2 C 0.01 0.10 7.33 -82.10 -0.60 -0.50 16 3 C -0.21 -1.66 11.06 -39.38 -0.44 -2.10 16 4 C -0.04 -0.38 6.86 -35.31 -0.24 -0.62 16 5 C 0.20 1.95 6.23 -5.20 -0.03 1.91 16 6 N -0.74 -7.28 5.54 -62.94 -0.35 -7.62 16 7 C 0.54 7.31 6.95 -13.04 -0.09 7.22 16 8 O -0.51 -9.18 12.48 5.17 0.06 -9.11 16 9 C -0.26 -3.05 9.92 -37.51 -0.37 -3.42 16 10 C 0.03 0.40 9.77 -37.19 -0.36 0.03 16 11 C -0.18 -3.28 4.34 -105.03 -0.46 -3.74 16 12 C 0.00 -0.02 6.77 -39.14 -0.27 -0.29 16 13 C -0.20 -4.46 9.97 -39.47 -0.39 -4.85 16 14 C 0.17 4.25 6.66 -38.89 -0.26 3.99 16 15 O -0.17 -5.05 9.74 0.74 0.01 -5.05 16 16 C -0.39 -11.04 9.48 30.91 0.29 -10.74 16 17 H 0.09 2.43 5.18 -52.48 -0.27 2.16 16 18 C 0.04 1.07 5.49 -17.51 -0.10 0.97 16 19 N -0.86 -25.40 13.67 55.48 0.76 -24.64 16 20 Si 0.94 20.62 29.55 -169.99 -5.02 15.60 16 21 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 22 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 23 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 24 C -0.25 -5.55 9.14 -39.46 -0.36 -5.91 16 25 C -0.04 -0.82 9.78 -39.14 -0.38 -1.20 16 26 O 0.11 1.18 11.20 17.15 0.19 1.37 16 27 N -0.36 -4.06 12.07 33.42 0.40 -3.66 16 28 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.08 0.30 8.14 -51.93 -0.42 -0.13 16 31 H 0.17 0.95 8.06 -52.49 -0.42 0.53 16 32 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.40 2.97 8.44 -40.82 -0.34 2.62 16 35 H 0.12 0.98 8.06 -52.48 -0.42 0.56 16 36 H 0.12 1.24 8.06 -52.48 -0.42 0.82 16 37 H 0.10 1.77 7.46 -52.49 -0.39 1.38 16 38 H 0.11 2.51 8.06 -52.49 -0.42 2.09 16 39 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 40 H 0.13 2.80 5.62 -52.49 -0.29 2.50 16 41 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 LS Contribution 361.83 15.07 5.45 5.45 Total: -1.00 -34.49 361.83 -6.84 -41.33 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: -4.67 Total: 5.60 kcal Atomic # 6 Polarization: -15.60 SS G_CDS: -3.68 Total: -19.28 kcal Atomic # 7 Polarization: -36.73 SS G_CDS: 0.81 Total: -35.92 kcal Atomic # 8 Polarization: -13.05 SS G_CDS: 0.26 Total: -12.79 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -34.49 -6.84 -41.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255697950.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.166 kcal (2) G-P(sol) polarization free energy of solvation -34.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.332 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds