Wall clock time and date at job start Tue Mar 31 2020 14:43:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.27486 * 124.86738 * 2 1 4 4 N 1.38799 * 116.83235 * 179.97438 * 3 2 1 5 5 C 1.35157 * 113.43590 * 0.02562 * 4 3 2 6 6 N 1.32313 * 108.84738 * 180.02562 * 5 4 3 7 7 C 1.33834 * 109.09261 * 0.02562 * 6 5 4 8 8 C 1.50697 * 125.82347 * 179.97438 * 7 6 5 9 9 C 1.34468 * 108.35189 * 359.97438 * 7 6 5 10 10 C 1.50696 * 126.42756 * 179.97438 * 9 7 6 11 11 N 1.46504 * 109.47369 * 270.02957 * 10 9 7 12 12 C 1.38856 * 120.00163 * 179.97438 * 11 10 9 13 13 C 1.39566 * 119.84221 * 359.73265 * 12 11 10 14 14 C 1.36340 * 120.16146 * 179.72026 * 13 12 11 15 15 C 1.40887 * 119.83501 * 0.54128 * 14 13 12 16 16 C 1.41130 * 120.15570 * 179.70280 * 15 14 13 17 17 H 1.07998 * 120.00129 * 155.11431 * 16 15 14 18 18 C 1.39865 * 120.00159 * 335.11257 * 16 15 14 19 19 N 1.30903 * 120.00239 * 342.13565 * 18 16 15 20 20 Si 1.86807 * 119.99898 * 162.12714 * 18 16 15 21 21 H 1.48502 * 109.46879 * 94.65940 * 20 18 16 22 22 H 1.48501 * 109.46881 * 214.65398 * 20 18 16 23 23 H 1.48494 * 109.47213 * 334.65724 * 20 18 16 24 24 C 1.40894 * 119.68734 * 359.73029 * 15 14 13 25 25 C 1.36339 * 119.83395 * 359.97438 * 24 15 14 26 26 S 1.75777 * 124.86423 * 179.78756 * 2 1 3 27 27 H 1.08994 * 109.47307 * 90.00189 * 1 2 3 28 28 H 1.09002 * 109.47047 * 210.00030 * 1 2 3 29 29 H 1.08996 * 109.46606 * 329.99893 * 1 2 3 30 30 H 1.09003 * 109.47347 * 89.97173 * 8 7 6 31 31 H 1.09001 * 109.47246 * 209.97061 * 8 7 6 32 32 H 1.09007 * 109.47242 * 329.97124 * 8 7 6 33 33 H 1.09002 * 109.47256 * 30.02571 * 10 9 7 34 34 H 1.09002 * 109.47459 * 150.02963 * 10 9 7 35 35 H 0.97000 * 119.99754 * 359.97438 * 11 10 9 36 36 H 1.08007 * 119.91955 * 359.96953 * 13 12 11 37 37 H 1.08001 * 120.08378 * 180.27235 * 14 13 12 38 38 H 0.96999 * 120.00621 * 179.97438 * 19 18 16 39 39 H 1.07997 * 120.07604 * 179.97438 * 24 15 14 40 40 H 1.08006 * 119.91273 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2358 1.0460 0.0000 4 7 3.6102 0.8520 0.0006 5 6 3.9692 -0.4511 0.0005 6 7 5.2899 -0.5306 0.0016 7 6 5.8029 0.7055 0.0030 8 6 7.2695 1.0518 0.0051 9 6 4.7864 1.5858 0.0022 10 6 4.9037 3.0882 0.0037 11 7 4.9402 3.5738 1.3855 12 6 5.0467 4.9345 1.6406 13 6 5.1243 5.8363 0.5782 14 6 5.2233 7.1742 0.8212 15 6 5.2586 7.6448 2.1487 16 6 5.3673 9.0278 2.4080 17 1 5.0032 9.4326 3.3407 18 6 5.9466 9.8742 1.4571 19 7 6.6920 9.3748 0.5040 20 14 5.6565 11.7174 1.5472 21 1 6.7721 12.3584 2.2887 22 1 5.5902 12.2758 0.1728 23 1 4.3766 11.9832 2.2518 24 6 5.1855 6.7281 3.2162 25 6 5.0807 5.3935 2.9581 26 16 2.5118 -1.4423 0.0053 27 1 -0.3633 0.0000 -1.0276 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3632 0.8900 0.5138 30 1 7.6247 1.1354 -1.0221 31 1 7.4179 2.0014 0.5192 32 1 7.8270 0.2690 0.5196 33 1 5.8198 3.3816 -0.5088 34 1 4.0452 3.5202 -0.5106 35 1 4.8900 2.9447 2.1221 36 1 5.1019 5.4737 -0.4389 37 1 5.2789 7.8713 -0.0018 38 1 7.0935 9.9618 -0.1557 39 1 5.2125 7.0819 4.2362 40 1 5.0250 4.6896 3.7754 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273667354.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:43:16 Heat of formation + Delta-G solvation = 146.896112 kcal Electronic energy + Delta-G solvation = -24020.536592 eV Core-core repulsion = 20542.858720 eV Total energy + Delta-G solvation = -3477.677872 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.105 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.75532 -38.39901 -37.90739 -35.25868 -33.23373 -33.12486 -31.31217 -29.97529 -29.46929 -28.66457 -27.02025 -25.54778 -24.05839 -23.55216 -21.25034 -20.62860 -20.35152 -20.00579 -18.75940 -17.20999 -16.80354 -16.38737 -16.16671 -15.06838 -14.92385 -14.79531 -14.45993 -13.96342 -13.75037 -13.65995 -13.27215 -13.23500 -13.11925 -12.70847 -12.64460 -12.39472 -12.25827 -12.01989 -11.86373 -11.66406 -11.33913 -11.02689 -10.97711 -10.88115 -10.66700 -10.48350 -10.22440 -9.71856 -9.34149 -9.28352 -9.24127 -8.56458 -8.19931 -7.50275 -6.64833 -6.41351 -4.04012 0.15942 0.49433 0.88304 1.53651 1.65356 2.51750 2.90928 3.09549 3.14874 3.19828 3.34494 3.64980 4.05399 4.19560 4.42295 4.55451 4.70142 4.75716 4.81727 4.85871 5.18472 5.23111 5.34700 5.62439 5.72769 5.77536 5.81827 5.85273 6.07270 6.25973 6.29710 6.35651 6.87927 6.92560 7.04013 7.19315 7.34921 7.41919 7.52771 7.67975 7.82119 8.14667 8.26851 8.46167 8.65641 8.78013 9.05723 9.14303 10.37051 Molecular weight = 328.11amu Principal moments of inertia in cm(-1) A = 0.020806 B = 0.002491 C = 0.002347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.441960 B =11238.069656 C =11927.077705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.090 3.910 3 N -0.233 5.233 4 N -0.302 5.302 5 C 0.102 3.898 6 N -0.435 5.435 7 C 0.057 3.943 8 C -0.070 4.070 9 C 0.019 3.981 10 C 0.216 3.784 11 N -0.756 5.756 12 C 0.092 3.908 13 C -0.162 4.162 14 C -0.124 4.124 15 C 0.076 3.924 16 C -0.467 4.467 17 H 0.072 0.928 18 C 0.075 3.925 19 N -0.807 5.807 20 Si 0.902 3.098 21 H -0.273 1.273 22 H -0.278 1.278 23 H -0.263 1.263 24 C -0.186 4.186 25 C -0.155 4.155 26 S 0.161 5.839 27 H 0.103 0.897 28 H 0.098 0.902 29 H 0.102 0.898 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.060 0.940 35 H 0.384 0.616 36 H 0.087 0.913 37 H 0.118 0.882 38 H 0.276 0.724 39 H 0.092 0.908 40 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.080 -19.481 -4.036 21.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.208 4.208 3 N -0.045 5.045 4 N -0.079 5.079 5 C -0.266 4.266 6 N -0.160 5.160 7 C -0.077 4.077 8 C -0.128 4.128 9 C -0.096 4.096 10 C 0.090 3.910 11 N -0.393 5.393 12 C -0.005 4.005 13 C -0.184 4.184 14 C -0.144 4.144 15 C 0.073 3.927 16 C -0.498 4.498 17 H 0.090 0.910 18 C -0.140 4.140 19 N -0.434 5.434 20 Si 0.727 3.273 21 H -0.198 1.198 22 H -0.203 1.203 23 H -0.187 1.187 24 C -0.207 4.207 25 C -0.177 4.177 26 S 0.397 5.603 27 H 0.121 0.879 28 H 0.117 0.883 29 H 0.121 0.879 30 H 0.096 0.904 31 H 0.103 0.897 32 H 0.096 0.904 33 H 0.097 0.903 34 H 0.078 0.922 35 H 0.217 0.783 36 H 0.105 0.895 37 H 0.136 0.864 38 H 0.087 0.913 39 H 0.110 0.890 40 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -8.794 -20.266 -4.432 22.532 hybrid contribution -0.103 1.802 0.220 1.818 sum -8.897 -18.465 -4.211 20.925 Atomic orbital electron populations 1.20620 0.81530 1.05811 1.05511 1.28503 1.02500 0.91303 0.98531 1.73812 0.86840 1.24765 1.19106 1.47715 1.01852 1.06371 1.51912 1.26480 0.98537 0.87151 1.14466 1.70490 1.01369 1.24195 1.19932 1.20736 0.96416 0.86717 1.03812 1.20217 0.86529 1.02852 1.03232 1.21327 0.79683 0.95794 1.12754 1.19327 1.01814 0.82850 0.86993 1.43826 1.87142 1.04532 1.03754 1.17294 1.07717 0.82020 0.93448 1.20072 1.09213 0.93894 0.95255 1.20919 1.02617 0.93260 0.97616 1.17495 0.91289 0.92992 0.90898 1.19361 1.35590 0.92136 1.02694 0.90956 1.25795 0.92878 1.00869 0.94487 1.69852 1.23050 1.37396 1.13092 0.86417 0.79734 0.82904 0.78280 1.19839 1.20282 1.18688 1.20542 1.10435 0.92088 0.97595 1.19785 1.09373 0.95585 0.92980 1.85297 0.88805 1.03509 1.82737 0.87881 0.88318 0.87912 0.90423 0.89676 0.90390 0.90317 0.92228 0.78333 0.89461 0.86381 0.91320 0.89023 0.89697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.31 10.49 36.01 0.38 0.07 16 2 C 0.09 0.83 7.58 -14.08 -0.11 0.73 16 3 N -0.23 -3.15 11.97 32.88 0.39 -2.75 16 4 N -0.30 -4.62 4.42 -8.74 -0.04 -4.66 16 5 C 0.10 1.47 9.00 -88.74 -0.80 0.67 16 6 N -0.44 -6.81 11.32 -9.76 -0.11 -6.92 16 7 C 0.06 0.84 7.06 -83.05 -0.59 0.25 16 8 C -0.07 -0.83 10.03 36.00 0.36 -0.47 16 9 C 0.02 0.30 6.63 -80.85 -0.54 -0.23 16 10 C 0.22 3.53 5.03 -5.19 -0.03 3.51 16 11 N -0.76 -13.84 5.69 -59.67 -0.34 -14.18 16 12 C 0.09 2.02 6.67 -83.69 -0.56 1.46 16 13 C -0.16 -3.81 9.23 -39.77 -0.37 -4.18 16 14 C -0.12 -3.26 8.63 -39.26 -0.34 -3.60 16 15 C 0.08 2.07 5.57 -106.79 -0.59 1.47 16 16 C -0.47 -12.71 9.03 -37.88 -0.34 -13.06 16 17 H 0.07 1.91 7.91 -52.49 -0.41 1.49 16 18 C 0.07 1.94 5.13 -17.34 -0.09 1.85 16 19 N -0.81 -21.39 10.98 55.54 0.61 -20.78 16 20 Si 0.90 19.25 29.60 -169.99 -5.03 14.22 16 21 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 22 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 23 H -0.26 -5.58 7.11 56.52 0.40 -5.17 16 24 C -0.19 -4.65 9.74 -39.26 -0.38 -5.04 16 25 C -0.16 -3.54 9.82 -39.77 -0.39 -3.93 16 26 S 0.16 1.53 23.35 -107.50 -2.51 -0.98 16 27 H 0.10 0.26 8.14 -51.93 -0.42 -0.17 16 28 H 0.10 0.16 8.14 -51.93 -0.42 -0.26 16 29 H 0.10 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 31 H 0.08 1.02 7.75 -51.93 -0.40 0.62 16 32 H 0.08 0.84 8.14 -51.92 -0.42 0.42 16 33 H 0.08 1.23 7.54 -51.93 -0.39 0.83 16 34 H 0.06 1.04 7.94 -51.93 -0.41 0.62 16 35 H 0.38 6.75 8.46 -40.82 -0.35 6.40 16 36 H 0.09 1.86 6.68 -52.48 -0.35 1.51 16 37 H 0.12 3.21 6.18 -52.49 -0.32 2.88 16 38 H 0.28 6.70 8.30 -40.82 -0.34 6.36 16 39 H 0.09 2.16 8.06 -52.49 -0.42 1.74 16 40 H 0.08 1.73 8.06 -52.48 -0.42 1.31 16 LS Contribution 355.87 15.07 5.36 5.36 Total: -1.00 -32.17 355.87 -10.78 -42.94 By element: Atomic # 1 Polarization: 12.97 SS G_CDS: -4.73 Total: 8.23 kcal Atomic # 6 Polarization: -16.11 SS G_CDS: -4.38 Total: -20.49 kcal Atomic # 7 Polarization: -49.81 SS G_CDS: 0.51 Total: -49.29 kcal Atomic # 14 Polarization: 19.25 SS G_CDS: -5.03 Total: 14.22 kcal Atomic # 16 Polarization: 1.53 SS G_CDS: -2.51 Total: -0.98 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -32.17 -10.78 -42.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273667354.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 189.840 kcal (2) G-P(sol) polarization free energy of solvation -32.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 157.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.944 kcal (6) G-S(sol) free energy of system = (1) + (5) 146.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds