Wall clock time and date at job start Tue Mar 31 2020 14:43:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.27486 * 124.86738 * 2 1 4 4 N 1.38799 * 116.83235 * 179.97438 * 3 2 1 5 5 C 1.35157 * 113.43590 * 0.02562 * 4 3 2 6 6 N 1.32313 * 108.84738 * 180.02562 * 5 4 3 7 7 C 1.33834 * 109.09261 * 0.02562 * 6 5 4 8 8 C 1.50697 * 125.82347 * 179.97438 * 7 6 5 9 9 C 1.34468 * 108.35189 * 359.97438 * 7 6 5 10 10 C 1.50696 * 126.42756 * 179.97438 * 9 7 6 11 11 N 1.46504 * 109.47369 * 270.02957 * 10 9 7 12 12 C 1.38856 * 120.00163 * 179.97438 * 11 10 9 13 13 C 1.39566 * 119.84221 * 359.73265 * 12 11 10 14 14 C 1.36340 * 120.16146 * 179.72026 * 13 12 11 15 15 C 1.40887 * 119.83501 * 0.54128 * 14 13 12 16 16 C 1.41130 * 120.15570 * 179.70280 * 15 14 13 17 17 H 1.07998 * 120.00129 * 155.11431 * 16 15 14 18 18 C 1.39865 * 120.00159 * 335.11257 * 16 15 14 19 19 N 1.30903 * 120.00239 * 342.13565 * 18 16 15 20 20 Si 1.86807 * 119.99898 * 162.12714 * 18 16 15 21 21 H 1.48502 * 109.46879 * 94.65940 * 20 18 16 22 22 H 1.48501 * 109.46881 * 214.65398 * 20 18 16 23 23 H 1.48494 * 109.47213 * 334.65724 * 20 18 16 24 24 C 1.40894 * 119.68734 * 359.73029 * 15 14 13 25 25 C 1.36339 * 119.83395 * 359.97438 * 24 15 14 26 26 S 1.75777 * 124.86423 * 179.78756 * 2 1 3 27 27 H 1.08994 * 109.47307 * 90.00189 * 1 2 3 28 28 H 1.09002 * 109.47047 * 210.00030 * 1 2 3 29 29 H 1.08996 * 109.46606 * 329.99893 * 1 2 3 30 30 H 1.09003 * 109.47347 * 89.97173 * 8 7 6 31 31 H 1.09001 * 109.47246 * 209.97061 * 8 7 6 32 32 H 1.09007 * 109.47242 * 329.97124 * 8 7 6 33 33 H 1.09002 * 109.47256 * 30.02571 * 10 9 7 34 34 H 1.09002 * 109.47459 * 150.02963 * 10 9 7 35 35 H 0.97000 * 119.99754 * 359.97438 * 11 10 9 36 36 H 1.08007 * 119.91955 * 359.96953 * 13 12 11 37 37 H 1.08001 * 120.08378 * 180.27235 * 14 13 12 38 38 H 0.96999 * 120.00621 * 179.97438 * 19 18 16 39 39 H 1.07997 * 120.07604 * 179.97438 * 24 15 14 40 40 H 1.08006 * 119.91273 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2358 1.0460 0.0000 4 7 3.6102 0.8520 0.0006 5 6 3.9692 -0.4511 0.0005 6 7 5.2899 -0.5306 0.0016 7 6 5.8029 0.7055 0.0030 8 6 7.2695 1.0518 0.0051 9 6 4.7864 1.5858 0.0022 10 6 4.9037 3.0882 0.0037 11 7 4.9402 3.5738 1.3855 12 6 5.0467 4.9345 1.6406 13 6 5.1243 5.8363 0.5782 14 6 5.2233 7.1742 0.8212 15 6 5.2586 7.6448 2.1487 16 6 5.3673 9.0278 2.4080 17 1 5.0032 9.4326 3.3407 18 6 5.9466 9.8742 1.4571 19 7 6.6920 9.3748 0.5040 20 14 5.6565 11.7174 1.5472 21 1 6.7721 12.3584 2.2887 22 1 5.5902 12.2758 0.1728 23 1 4.3766 11.9832 2.2518 24 6 5.1855 6.7281 3.2162 25 6 5.0807 5.3935 2.9581 26 16 2.5118 -1.4423 0.0053 27 1 -0.3633 0.0000 -1.0276 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3632 0.8900 0.5138 30 1 7.6247 1.1354 -1.0221 31 1 7.4179 2.0014 0.5192 32 1 7.8270 0.2690 0.5196 33 1 5.8198 3.3816 -0.5088 34 1 4.0452 3.5202 -0.5106 35 1 4.8900 2.9447 2.1221 36 1 5.1019 5.4737 -0.4389 37 1 5.2789 7.8713 -0.0018 38 1 7.0935 9.9618 -0.1557 39 1 5.2125 7.0819 4.2362 40 1 5.0250 4.6896 3.7754 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273667354.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:43:14 Heat of formation + Delta-G solvation = 128.027456 kcal Electronic energy + Delta-G solvation = -24021.354798 eV Core-core repulsion = 20542.858720 eV Total energy + Delta-G solvation = -3478.496078 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.105 amu Computer time = 2.55 seconds Orbital eigenvalues (eV) -43.77820 -39.82947 -39.20829 -36.91475 -34.98416 -33.98141 -32.65456 -31.37736 -30.88180 -30.16758 -28.21467 -26.86015 -25.63595 -24.62442 -23.02613 -22.00916 -21.53439 -21.21834 -19.84287 -19.16270 -18.04425 -17.62827 -17.32731 -16.81191 -16.49124 -15.67478 -15.46557 -15.24711 -15.05690 -14.95905 -14.48652 -14.43547 -14.17978 -13.98510 -13.82334 -13.64891 -13.57436 -13.33784 -13.11414 -13.10332 -12.79065 -12.73263 -12.64055 -12.29293 -11.85122 -11.65383 -11.56865 -11.28737 -11.20891 -11.08309 -10.37309 -10.29234 -9.42831 -9.17327 -8.55980 -8.22971 -6.02517 -0.68511 -0.35878 0.01808 0.62748 0.67295 1.09197 1.16688 1.40562 1.42528 1.52646 1.58685 2.27484 2.68926 2.83442 2.94270 3.55664 3.56308 3.72929 3.83030 4.00148 4.16789 4.38128 4.46234 4.50439 4.58093 4.61054 4.74305 4.82178 4.85002 4.92212 5.01120 5.04580 5.08412 5.25750 5.36489 5.43415 5.63923 5.76518 5.92129 6.10528 6.17486 6.35323 6.37844 6.62055 6.81208 7.02038 7.07678 7.22801 8.47787 Molecular weight = 328.11amu Principal moments of inertia in cm(-1) A = 0.020806 B = 0.002491 C = 0.002347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.441960 B =11238.069656 C =11927.077705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.108 3.892 3 N -0.284 5.284 4 N -0.312 5.312 5 C 0.080 3.920 6 N -0.463 5.463 7 C 0.057 3.943 8 C -0.068 4.068 9 C -0.007 4.007 10 C 0.225 3.775 11 N -0.745 5.745 12 C 0.111 3.889 13 C -0.170 4.170 14 C -0.142 4.142 15 C 0.039 3.961 16 C -0.505 4.505 17 H 0.068 0.932 18 C 0.033 3.967 19 N -0.839 5.839 20 Si 0.976 3.024 21 H -0.265 1.265 22 H -0.268 1.268 23 H -0.262 1.262 24 C -0.195 4.195 25 C -0.161 4.161 26 S 0.221 5.779 27 H 0.127 0.873 28 H 0.131 0.869 29 H 0.104 0.896 30 H 0.092 0.908 31 H 0.080 0.920 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.048 0.952 35 H 0.391 0.609 36 H 0.105 0.895 37 H 0.101 0.899 38 H 0.283 0.717 39 H 0.097 0.903 40 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.549 -21.267 -4.178 24.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.189 4.189 3 N -0.098 5.098 4 N -0.087 5.087 5 C -0.288 4.288 6 N -0.189 5.189 7 C -0.077 4.077 8 C -0.126 4.126 9 C -0.122 4.122 10 C 0.099 3.901 11 N -0.380 5.380 12 C 0.013 3.987 13 C -0.192 4.192 14 C -0.162 4.162 15 C 0.037 3.963 16 C -0.536 4.536 17 H 0.086 0.914 18 C -0.180 4.180 19 N -0.467 5.467 20 Si 0.797 3.203 21 H -0.190 1.190 22 H -0.193 1.193 23 H -0.186 1.186 24 C -0.215 4.215 25 C -0.184 4.184 26 S 0.456 5.544 27 H 0.145 0.855 28 H 0.150 0.850 29 H 0.123 0.877 30 H 0.111 0.889 31 H 0.099 0.901 32 H 0.105 0.895 33 H 0.105 0.895 34 H 0.066 0.934 35 H 0.224 0.776 36 H 0.123 0.877 37 H 0.119 0.881 38 H 0.093 0.907 39 H 0.116 0.884 40 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -10.278 -22.105 -4.575 24.804 hybrid contribution 0.195 2.031 0.252 2.056 sum -10.083 -20.074 -4.323 22.877 Atomic orbital electron populations 1.21036 0.77802 1.07439 1.07460 1.29497 1.04166 0.90542 0.94689 1.73925 0.86071 1.26712 1.23044 1.47890 1.02684 1.06515 1.51603 1.27425 0.99550 0.88341 1.13442 1.70492 1.02261 1.24540 1.21601 1.21158 0.97385 0.86522 1.02600 1.20286 0.85189 1.02839 1.04267 1.21140 0.80572 0.95194 1.15324 1.19231 1.01581 0.83834 0.85438 1.43836 1.85921 1.03096 1.05187 1.17359 1.04973 0.83470 0.92909 1.20213 1.09102 0.93186 0.96675 1.20851 1.04197 0.94190 0.96981 1.17816 0.92950 0.93750 0.91825 1.19585 1.37448 0.93034 1.03554 0.91396 1.26610 0.92019 1.05527 0.93802 1.69910 1.23679 1.39242 1.13840 0.85300 0.79590 0.76770 0.78629 1.18991 1.19260 1.18583 1.20734 1.10325 0.92935 0.97521 1.20044 1.08828 0.95301 0.94180 1.85113 0.85776 1.02026 1.81466 0.85485 0.85039 0.87734 0.88934 0.90071 0.89480 0.89528 0.93397 0.77595 0.87695 0.88143 0.90682 0.88441 0.86986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.35 10.49 71.24 0.75 0.39 16 2 C 0.11 1.73 7.58 88.74 0.67 2.40 16 3 N -0.28 -7.34 11.97 -49.04 -0.59 -7.93 16 4 N -0.31 -9.34 4.42 -181.55 -0.80 -10.14 16 5 C 0.08 2.23 9.00 179.69 1.62 3.85 16 6 N -0.46 -14.20 11.32 -184.79 -2.09 -16.29 16 7 C 0.06 1.66 7.06 41.39 0.29 1.95 16 8 C -0.07 -1.54 10.03 71.23 0.71 -0.83 16 9 C -0.01 -0.21 6.63 40.62 0.27 0.06 16 10 C 0.22 7.26 5.03 85.63 0.43 7.69 16 11 N -0.74 -26.67 5.69 -342.71 -1.95 -28.62 16 12 C 0.11 4.86 6.67 38.67 0.26 5.12 16 13 C -0.17 -8.04 9.23 22.15 0.20 -7.84 16 14 C -0.14 -7.71 8.63 22.48 0.19 -7.52 16 15 C 0.04 2.21 5.57 -21.27 -0.12 2.09 16 16 C -0.51 -28.51 9.03 23.37 0.21 -28.29 16 17 H 0.07 3.72 7.91 -2.91 -0.02 3.70 16 18 C 0.03 1.73 5.13 85.23 0.44 2.16 16 19 N -0.84 -45.74 10.98 21.82 0.24 -45.50 16 20 Si 0.98 40.15 29.60 68.60 2.03 42.18 16 21 H -0.26 -10.48 7.11 99.48 0.71 -9.78 16 22 H -0.27 -10.50 7.11 99.48 0.71 -9.79 16 23 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 24 C -0.20 -9.90 9.74 22.48 0.22 -9.68 16 25 C -0.16 -7.27 9.82 22.15 0.22 -7.05 16 26 S 0.22 3.63 23.35 -56.49 -1.32 2.31 16 27 H 0.13 0.11 8.14 -2.39 -0.02 0.09 16 28 H 0.13 -0.20 8.14 -2.39 -0.02 -0.22 16 29 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.08 1.89 7.75 -2.39 -0.02 1.87 16 32 H 0.09 1.79 8.14 -2.38 -0.02 1.77 16 33 H 0.09 2.66 7.54 -2.39 -0.02 2.64 16 34 H 0.05 1.67 7.94 -2.39 -0.02 1.65 16 35 H 0.39 13.26 8.46 -92.71 -0.78 12.48 16 36 H 0.11 4.49 6.68 -2.91 -0.02 4.48 16 37 H 0.10 5.72 6.18 -2.91 -0.02 5.70 16 38 H 0.28 14.01 8.30 -92.71 -0.77 13.24 16 39 H 0.10 4.69 8.06 -2.91 -0.02 4.66 16 40 H 0.11 4.38 8.06 -2.91 -0.02 4.36 16 Total: -1.00 -72.40 355.87 2.19 -70.20 By element: Atomic # 1 Polarization: 28.96 SS G_CDS: 0.31 Total: 29.27 kcal Atomic # 6 Polarization: -41.84 SS G_CDS: 6.37 Total: -35.48 kcal Atomic # 7 Polarization: -103.29 SS G_CDS: -5.19 Total: -108.49 kcal Atomic # 14 Polarization: 40.15 SS G_CDS: 2.03 Total: 42.18 kcal Atomic # 16 Polarization: 3.63 SS G_CDS: -1.32 Total: 2.31 kcal Total: -72.40 2.19 -70.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273667354.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 198.231 kcal (2) G-P(sol) polarization free energy of solvation -72.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.204 kcal (6) G-S(sol) free energy of system = (1) + (5) 128.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.55 seconds