Wall clock time and date at job start Tue Mar 31 2020 14:50:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50704 * 110.50395 * 2 1 4 4 C 1.38234 * 120.00277 * 89.30100 * 3 2 1 5 5 C 1.38230 * 119.99885 * 180.02562 * 4 3 2 6 6 C 1.38235 * 120.00326 * 359.97438 * 5 4 3 7 7 C 1.38234 * 119.99814 * 359.97438 * 6 5 4 8 8 C 1.38235 * 119.99518 * 269.31782 * 3 2 1 9 9 O 1.45958 * 110.56663 * 122.74470 * 2 1 3 10 10 C 1.34290 * 106.88959 * 118.71959 * 9 2 1 11 11 O 1.21467 * 123.78267 * 180.02562 * 10 9 2 12 12 N 1.33832 * 112.43628 * 359.97438 * 10 9 2 13 13 C 1.46491 * 124.34815 * 179.97438 * 12 10 9 14 14 C 1.53003 * 109.47445 * 89.97692 * 13 12 10 15 15 H 1.09002 * 109.47051 * 54.99718 * 14 13 12 16 16 C 1.47201 * 109.46686 * 295.00411 * 14 13 12 17 17 N 5.20296 * 94.55538 * 174.55824 * 2 1 3 18 18 C 1.52989 * 109.47654 * 175.00183 * 14 13 12 19 19 C 1.50701 * 109.47748 * 185.00077 * 18 14 13 20 20 H 1.08010 * 119.99080 * 359.97438 * 19 18 14 21 21 C 1.37874 * 120.00532 * 180.02562 * 19 18 14 22 22 N 1.31514 * 119.99922 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 119.99839 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47120 * 60.00010 * 23 21 19 25 25 H 1.48510 * 109.46868 * 179.97438 * 23 21 19 26 26 H 1.48501 * 109.47263 * 299.99575 * 23 21 19 27 27 C 1.35154 * 111.34880 * 359.91621 * 12 10 9 28 28 O 1.21238 * 127.36600 * 180.02562 * 27 12 10 29 29 H 1.08997 * 109.47151 * 60.00250 * 1 2 3 30 30 H 1.09001 * 109.47060 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47653 * 300.00404 * 1 2 3 32 32 H 1.07992 * 119.99701 * 359.97438 * 4 3 2 33 33 H 1.08000 * 120.00356 * 179.97438 * 5 4 3 34 34 H 1.08000 * 120.00616 * 179.70664 * 6 5 4 35 35 H 1.08001 * 120.00299 * 179.97438 * 7 6 5 36 36 H 1.07997 * 120.00423 * 359.97438 * 8 3 2 37 37 H 1.08999 * 109.47363 * 209.97749 * 13 12 10 38 38 H 1.09005 * 109.47275 * 329.97944 * 13 12 10 39 39 H 1.09004 * 109.47404 * 305.00068 * 18 14 13 40 40 H 1.09001 * 109.47215 * 64.99535 * 18 14 13 41 41 H 0.96998 * 119.99611 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0579 1.4116 0.0000 4 6 2.2863 2.0641 1.1970 5 6 2.7700 3.3590 1.1969 6 6 3.0258 4.0013 -0.0001 7 6 2.7983 3.3484 -1.1972 8 6 2.3133 2.0539 -1.1971 9 8 2.0428 -0.7392 1.1494 10 6 2.7579 -1.7672 0.6646 11 8 3.3246 -2.5842 1.3624 12 7 2.7754 -1.7914 -0.6733 13 6 3.4769 -2.7988 -1.4727 14 6 2.5375 -3.9739 -1.7511 15 1 1.6244 -3.6061 -2.2194 16 6 2.2031 -4.6454 -0.4846 17 7 1.9432 -5.1631 0.4919 18 6 3.2269 -4.9672 -2.6884 19 6 2.2597 -6.0613 -3.0606 20 1 1.2538 -6.0495 -2.6674 21 6 2.6591 -7.0778 -3.9021 22 7 3.8841 -7.0924 -4.3804 23 14 1.4603 -8.4343 -4.3627 24 1 0.2832 -7.8429 -5.0480 25 1 2.1296 -9.3984 -5.2727 26 1 1.0151 -9.1398 -3.1341 27 6 2.0617 -0.7682 -1.1933 28 8 1.8852 -0.5152 -2.3658 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 2.0861 1.5625 2.1322 33 1 2.9481 3.8691 2.1321 34 1 3.3992 5.0147 -0.0003 35 1 2.9978 3.8502 -2.1325 36 1 2.1350 1.5440 -2.1323 37 1 3.7951 -2.3565 -2.4168 38 1 4.3501 -3.1536 -0.9251 39 1 3.5539 -4.4492 -3.5901 40 1 4.0910 -5.4016 -2.1856 41 1 4.1649 -7.8074 -4.9727 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000290093367.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:10 Heat of formation + Delta-G solvation = -44.242838 kcal Electronic energy + Delta-G solvation = -27726.681495 eV Core-core repulsion = 23765.669594 eV Total energy + Delta-G solvation = -3961.011901 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.12367 -39.69834 -38.92825 -37.90638 -36.80565 -35.32217 -33.73697 -33.42372 -31.93375 -31.26783 -29.95894 -27.85643 -25.48104 -24.58076 -23.47457 -23.12254 -21.96716 -21.55393 -21.22307 -18.27573 -17.80862 -17.35736 -16.79236 -16.66480 -16.38958 -16.07694 -15.53952 -15.20049 -14.90955 -14.76747 -14.54107 -14.46273 -14.21361 -13.70169 -13.55775 -13.17745 -12.99361 -12.91213 -12.67185 -12.64138 -12.17629 -12.00829 -11.85416 -11.66293 -11.59710 -11.33296 -11.19951 -11.13573 -10.94638 -10.69363 -10.45480 -10.32181 -10.09798 -9.61641 -9.30940 -9.29357 -9.25134 -8.50461 -6.14947 -4.18797 0.79791 1.02717 1.22220 1.85791 2.56888 2.63122 3.28683 3.29838 3.33075 3.36674 3.44538 3.55111 3.60437 3.82965 4.26148 4.36378 4.52939 4.59568 4.65490 4.78258 4.79992 5.08313 5.10563 5.14090 5.16971 5.21022 5.23522 5.25983 5.43415 5.51898 5.59736 5.64513 5.70324 6.05521 6.07831 6.12915 6.14588 6.29255 6.56506 6.78638 6.91442 7.30105 7.40093 7.49495 7.78762 8.14015 8.36923 8.84185 9.46959 10.95875 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.021840 B = 0.003063 C = 0.002909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.744862 B = 9137.819694 C = 9621.545528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.111 3.889 3 C -0.102 4.102 4 C -0.085 4.085 5 C -0.122 4.122 6 C -0.107 4.107 7 C -0.118 4.118 8 C -0.104 4.104 9 O -0.299 6.299 10 C 0.644 3.356 11 O -0.457 6.457 12 N -0.582 5.582 13 C 0.122 3.878 14 C -0.007 4.007 15 H 0.107 0.893 16 C 0.225 3.775 17 N -0.446 5.446 18 C 0.035 3.965 19 C -0.529 4.529 20 H 0.056 0.944 21 C 0.065 3.935 22 N -0.890 5.890 23 Si 0.893 3.107 24 H -0.275 1.275 25 H -0.285 1.285 26 H -0.276 1.276 27 C 0.517 3.483 28 O -0.437 6.437 29 H 0.096 0.904 30 H 0.078 0.922 31 H 0.089 0.911 32 H 0.132 0.868 33 H 0.128 0.872 34 H 0.125 0.875 35 H 0.129 0.871 36 H 0.143 0.857 37 H 0.120 0.880 38 H 0.107 0.893 39 H 0.044 0.956 40 H 0.031 0.969 41 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.913 24.449 6.259 25.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.070 3.930 3 C -0.102 4.102 4 C -0.103 4.103 5 C -0.140 4.140 6 C -0.125 4.125 7 C -0.136 4.136 8 C -0.121 4.121 9 O -0.211 6.211 10 C 0.397 3.603 11 O -0.335 6.335 12 N -0.336 5.336 13 C 0.002 3.998 14 C -0.030 4.030 15 H 0.124 0.876 16 C -0.092 4.092 17 N -0.122 5.122 18 C -0.003 4.003 19 C -0.567 4.567 20 H 0.075 0.925 21 C -0.138 4.138 22 N -0.528 5.528 23 Si 0.721 3.279 24 H -0.200 1.200 25 H -0.211 1.211 26 H -0.202 1.202 27 C 0.303 3.697 28 O -0.305 6.305 29 H 0.115 0.885 30 H 0.097 0.903 31 H 0.108 0.892 32 H 0.150 0.850 33 H 0.146 0.854 34 H 0.143 0.857 35 H 0.147 0.853 36 H 0.161 0.839 37 H 0.138 0.862 38 H 0.126 0.874 39 H 0.062 0.938 40 H 0.050 0.950 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -3.025 23.336 7.602 24.729 hybrid contribution -0.452 -0.780 -0.694 1.138 sum -3.477 22.555 6.909 23.844 Atomic orbital electron populations 1.21986 0.87564 1.04895 1.05432 1.21941 0.98031 0.90422 0.82597 1.19151 1.03754 0.92254 0.95075 1.20988 0.97299 0.94581 0.97477 1.21169 0.99673 0.94700 0.98473 1.21316 0.98627 1.00022 0.92581 1.21164 0.99350 0.94528 0.98513 1.21391 0.97256 0.95470 0.98019 1.87820 1.63538 1.38655 1.31042 1.18320 0.78854 0.81417 0.81677 1.91165 1.43996 1.37119 1.61241 1.47106 1.49061 1.28872 1.08595 1.22169 0.95195 0.86038 0.96367 1.19619 1.00787 0.94346 0.88200 0.87556 1.28890 0.93167 0.93414 0.93752 1.81002 1.09116 1.09539 1.12564 1.19162 0.96116 0.92161 0.92880 1.21017 0.98180 1.08266 1.29234 0.92533 1.24931 0.95252 0.97909 0.95709 1.69917 1.16903 1.33347 1.32619 0.86624 0.81143 0.81674 0.78482 1.19999 1.21092 1.20198 1.20965 0.77780 0.80639 0.90330 1.90793 1.55518 1.68227 1.15963 0.88533 0.90301 0.89220 0.85031 0.85449 0.85657 0.85304 0.83943 0.86192 0.87439 0.93825 0.95045 0.92598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.22 9.01 37.16 0.33 -0.88 16 2 C 0.11 1.22 1.21 -92.50 -0.11 1.11 16 3 C -0.10 -1.01 4.90 -104.62 -0.51 -1.52 16 4 C -0.09 -0.76 9.38 -39.59 -0.37 -1.13 16 5 C -0.12 -0.90 10.05 -39.59 -0.40 -1.30 16 6 C -0.11 -0.75 10.05 -39.58 -0.40 -1.15 16 7 C -0.12 -0.91 10.05 -39.58 -0.40 -1.31 16 8 C -0.10 -0.97 9.18 -39.58 -0.36 -1.34 16 9 O -0.30 -3.97 9.88 -39.12 -0.39 -4.36 16 10 C 0.64 10.12 8.22 53.63 0.44 10.56 16 11 O -0.46 -8.72 16.55 -19.00 -0.31 -9.04 16 12 N -0.58 -8.32 2.51 -120.71 -0.30 -8.62 16 13 C 0.12 1.81 5.16 -4.05 -0.02 1.79 16 14 C -0.01 -0.13 2.42 -93.41 -0.23 -0.36 16 15 H 0.11 1.85 8.14 -51.93 -0.42 1.43 16 16 C 0.23 4.78 12.20 -20.78 -0.25 4.52 16 17 N -0.45 -10.33 18.50 42.13 0.78 -9.55 16 18 C 0.04 0.80 4.42 -27.89 -0.12 0.68 16 19 C -0.53 -13.90 8.60 -34.44 -0.30 -14.20 16 20 H 0.06 1.48 7.59 -52.48 -0.40 1.08 16 21 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 22 N -0.89 -25.09 13.29 55.43 0.74 -24.35 16 23 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16 24 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 25 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 26 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 27 C 0.52 6.61 6.51 -10.40 -0.07 6.54 16 28 O -0.44 -5.93 15.67 5.59 0.09 -5.84 16 29 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.13 1.10 7.63 -52.49 -0.40 0.70 16 33 H 0.13 0.67 8.06 -52.49 -0.42 0.24 16 34 H 0.13 0.58 8.06 -52.49 -0.42 0.16 16 35 H 0.13 0.75 8.06 -52.49 -0.42 0.32 16 36 H 0.14 1.41 5.69 -52.49 -0.30 1.11 16 37 H 0.12 1.52 8.03 -51.93 -0.42 1.10 16 38 H 0.11 1.58 7.87 -51.93 -0.41 1.17 16 39 H 0.04 0.98 8.14 -51.93 -0.42 0.55 16 40 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 362.21 15.07 5.46 5.46 Total: -1.00 -32.48 362.21 -6.69 -39.17 By element: Atomic # 1 Polarization: 2.18 SS G_CDS: -4.86 Total: -2.68 kcal Atomic # 6 Polarization: 6.54 SS G_CDS: -2.86 Total: 3.67 kcal Atomic # 7 Polarization: -43.74 SS G_CDS: 1.21 Total: -42.53 kcal Atomic # 8 Polarization: -18.63 SS G_CDS: -0.61 Total: -19.24 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -32.48 -6.69 -39.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290093367.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.072 kcal (2) G-P(sol) polarization free energy of solvation -32.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds