Wall clock time and date at job start Tue Mar 31 2020 14:50:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50704 * 110.50395 * 2 1 4 4 C 1.38234 * 120.00277 * 89.30100 * 3 2 1 5 5 C 1.38230 * 119.99885 * 180.02562 * 4 3 2 6 6 C 1.38235 * 120.00326 * 359.97438 * 5 4 3 7 7 C 1.38234 * 119.99814 * 359.97438 * 6 5 4 8 8 C 1.38235 * 119.99518 * 269.31782 * 3 2 1 9 9 O 1.45958 * 110.56663 * 122.74470 * 2 1 3 10 10 C 1.34290 * 106.88959 * 118.71959 * 9 2 1 11 11 O 1.21467 * 123.78267 * 180.02562 * 10 9 2 12 12 N 1.33832 * 112.43628 * 359.97438 * 10 9 2 13 13 C 1.46491 * 124.34815 * 179.97438 * 12 10 9 14 14 C 1.53003 * 109.47445 * 89.97692 * 13 12 10 15 15 H 1.09002 * 109.47051 * 54.99718 * 14 13 12 16 16 C 1.47201 * 109.46686 * 295.00411 * 14 13 12 17 17 N 5.20296 * 94.55538 * 174.55824 * 2 1 3 18 18 C 1.52989 * 109.47654 * 175.00183 * 14 13 12 19 19 C 1.50701 * 109.47748 * 185.00077 * 18 14 13 20 20 H 1.08010 * 119.99080 * 359.97438 * 19 18 14 21 21 C 1.37874 * 120.00532 * 180.02562 * 19 18 14 22 22 N 1.31514 * 119.99922 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 119.99839 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47120 * 60.00010 * 23 21 19 25 25 H 1.48510 * 109.46868 * 179.97438 * 23 21 19 26 26 H 1.48501 * 109.47263 * 299.99575 * 23 21 19 27 27 C 1.35154 * 111.34880 * 359.91621 * 12 10 9 28 28 O 1.21238 * 127.36600 * 180.02562 * 27 12 10 29 29 H 1.08997 * 109.47151 * 60.00250 * 1 2 3 30 30 H 1.09001 * 109.47060 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47653 * 300.00404 * 1 2 3 32 32 H 1.07992 * 119.99701 * 359.97438 * 4 3 2 33 33 H 1.08000 * 120.00356 * 179.97438 * 5 4 3 34 34 H 1.08000 * 120.00616 * 179.70664 * 6 5 4 35 35 H 1.08001 * 120.00299 * 179.97438 * 7 6 5 36 36 H 1.07997 * 120.00423 * 359.97438 * 8 3 2 37 37 H 1.08999 * 109.47363 * 209.97749 * 13 12 10 38 38 H 1.09005 * 109.47275 * 329.97944 * 13 12 10 39 39 H 1.09004 * 109.47404 * 305.00068 * 18 14 13 40 40 H 1.09001 * 109.47215 * 64.99535 * 18 14 13 41 41 H 0.96998 * 119.99611 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0579 1.4116 0.0000 4 6 2.2863 2.0641 1.1970 5 6 2.7700 3.3590 1.1969 6 6 3.0258 4.0013 -0.0001 7 6 2.7983 3.3484 -1.1972 8 6 2.3133 2.0539 -1.1971 9 8 2.0428 -0.7392 1.1494 10 6 2.7579 -1.7672 0.6646 11 8 3.3246 -2.5842 1.3624 12 7 2.7754 -1.7914 -0.6733 13 6 3.4769 -2.7988 -1.4727 14 6 2.5375 -3.9739 -1.7511 15 1 1.6244 -3.6061 -2.2194 16 6 2.2031 -4.6454 -0.4846 17 7 1.9432 -5.1631 0.4919 18 6 3.2269 -4.9672 -2.6884 19 6 2.2597 -6.0613 -3.0606 20 1 1.2538 -6.0495 -2.6674 21 6 2.6591 -7.0778 -3.9021 22 7 3.8841 -7.0924 -4.3804 23 14 1.4603 -8.4343 -4.3627 24 1 0.2832 -7.8429 -5.0480 25 1 2.1296 -9.3984 -5.2727 26 1 1.0151 -9.1398 -3.1341 27 6 2.0617 -0.7682 -1.1933 28 8 1.8852 -0.5152 -2.3658 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 2.0861 1.5625 2.1322 33 1 2.9481 3.8691 2.1321 34 1 3.3992 5.0147 -0.0003 35 1 2.9978 3.8502 -2.1325 36 1 2.1350 1.5440 -2.1323 37 1 3.7951 -2.3565 -2.4168 38 1 4.3501 -3.1536 -0.9251 39 1 3.5539 -4.4492 -3.5901 40 1 4.0910 -5.4016 -2.1856 41 1 4.1649 -7.8074 -4.9727 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000290093367.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:08 Heat of formation + Delta-G solvation = -62.167163 kcal Electronic energy + Delta-G solvation = -27727.458752 eV Core-core repulsion = 23765.669594 eV Total energy + Delta-G solvation = -3961.789158 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 2.34 seconds Orbital eigenvalues (eV) -44.20389 -40.54731 -39.95232 -39.06640 -38.26477 -36.72260 -35.55584 -34.22354 -33.70726 -31.87203 -30.63385 -29.45884 -26.66010 -25.96308 -24.40112 -23.89869 -23.74015 -22.40780 -22.25695 -19.36105 -18.90782 -18.58551 -18.39189 -18.00424 -17.52420 -17.13309 -16.60743 -16.46044 -16.13233 -15.98260 -15.50890 -15.42683 -15.22165 -15.01164 -14.60666 -14.40065 -14.25151 -13.98628 -13.71272 -13.64592 -13.54709 -13.33356 -13.18544 -13.00751 -12.81601 -12.74891 -12.73608 -12.48368 -12.23252 -12.13276 -11.93885 -11.76322 -11.44930 -11.27224 -10.98212 -10.57085 -9.90143 -9.88365 -8.21995 -6.30332 0.06864 0.23055 0.42896 0.72347 1.37580 1.40419 1.41974 1.48843 1.67268 1.85957 1.89841 2.36502 2.40271 2.76018 3.00455 3.05869 3.15001 3.44075 3.65928 3.77613 3.94107 4.01120 4.10565 4.16656 4.28477 4.38671 4.44895 4.51699 4.54977 4.62121 4.65971 4.71993 4.91412 4.95187 5.10932 5.39779 5.42191 5.48030 5.52683 5.56625 5.68381 5.73947 5.82667 5.99820 6.13576 6.31603 6.66185 6.81579 7.38052 8.88647 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.021840 B = 0.003063 C = 0.002909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.744862 B = 9137.819694 C = 9621.545528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.114 3.886 3 C -0.115 4.115 4 C -0.097 4.097 5 C -0.122 4.122 6 C -0.105 4.105 7 C -0.121 4.121 8 C -0.117 4.117 9 O -0.298 6.298 10 C 0.647 3.353 11 O -0.498 6.498 12 N -0.582 5.582 13 C 0.128 3.872 14 C 0.003 3.997 15 H 0.121 0.879 16 C 0.236 3.764 17 N -0.483 5.483 18 C 0.042 3.958 19 C -0.543 4.543 20 H 0.052 0.948 21 C 0.015 3.985 22 N -0.919 5.919 23 Si 0.947 3.053 24 H -0.263 1.263 25 H -0.280 1.280 26 H -0.283 1.283 27 C 0.519 3.481 28 O -0.441 6.441 29 H 0.111 0.889 30 H 0.072 0.928 31 H 0.107 0.893 32 H 0.132 0.868 33 H 0.150 0.850 34 H 0.153 0.847 35 H 0.148 0.852 36 H 0.134 0.866 37 H 0.147 0.853 38 H 0.107 0.893 39 H 0.048 0.952 40 H 0.010 0.990 41 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.600 26.799 5.881 27.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.073 3.927 3 C -0.116 4.116 4 C -0.115 4.115 5 C -0.140 4.140 6 C -0.123 4.123 7 C -0.138 4.138 8 C -0.134 4.134 9 O -0.209 6.209 10 C 0.402 3.598 11 O -0.380 6.380 12 N -0.336 5.336 13 C 0.008 3.992 14 C -0.019 4.019 15 H 0.139 0.861 16 C -0.081 4.081 17 N -0.160 5.160 18 C 0.003 3.997 19 C -0.581 4.581 20 H 0.071 0.929 21 C -0.184 4.184 22 N -0.559 5.559 23 Si 0.773 3.227 24 H -0.187 1.187 25 H -0.206 1.206 26 H -0.209 1.209 27 C 0.306 3.694 28 O -0.310 6.310 29 H 0.129 0.871 30 H 0.091 0.909 31 H 0.125 0.875 32 H 0.150 0.850 33 H 0.168 0.832 34 H 0.171 0.829 35 H 0.166 0.834 36 H 0.152 0.848 37 H 0.165 0.835 38 H 0.126 0.874 39 H 0.066 0.934 40 H 0.028 0.972 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -3.742 25.724 7.209 26.976 hybrid contribution -0.243 -1.393 -0.582 1.529 sum -3.985 24.332 6.627 25.531 Atomic orbital electron populations 1.22094 0.85710 1.04990 1.07071 1.22216 0.99293 0.90556 0.80591 1.19123 1.05148 0.91504 0.95824 1.21105 0.97894 0.95443 0.97081 1.21485 0.98622 0.94095 0.99809 1.21675 0.97481 1.01124 0.91972 1.21449 0.98586 0.93937 0.99871 1.21400 0.98264 0.96382 0.97402 1.87816 1.62963 1.38043 1.32075 1.18352 0.78388 0.81295 0.81773 1.91134 1.45876 1.38834 1.62119 1.47059 1.49322 1.29086 1.08167 1.22080 0.94110 0.85260 0.97799 1.19583 1.01771 0.94416 0.86159 0.86083 1.29425 0.92118 0.92673 0.93906 1.80992 1.10481 1.10660 1.13863 1.18966 0.94905 0.92228 0.93568 1.21429 0.98637 1.09267 1.28734 0.92943 1.25659 0.96680 1.00062 0.96021 1.70003 1.18252 1.34183 1.33427 0.85767 0.79683 0.79294 0.77957 1.18733 1.20554 1.20853 1.21261 0.77198 0.80183 0.90773 1.90794 1.55585 1.68223 1.16375 0.87052 0.90929 0.87454 0.85047 0.83218 0.82929 0.83429 0.84797 0.83522 0.87424 0.93394 0.97184 0.92547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.23 9.01 71.98 0.65 -1.58 16 2 C 0.11 2.38 1.21 -12.01 -0.01 2.36 16 3 C -0.12 -2.12 4.90 -19.86 -0.10 -2.22 16 4 C -0.10 -1.57 9.38 22.27 0.21 -1.36 16 5 C -0.12 -1.48 10.05 22.27 0.22 -1.26 16 6 C -0.10 -1.13 10.05 22.27 0.22 -0.91 16 7 C -0.12 -1.57 10.05 22.27 0.22 -1.35 16 8 C -0.12 -2.01 9.18 22.27 0.20 -1.80 16 9 O -0.30 -7.79 9.88 -52.28 -0.52 -8.31 16 10 C 0.65 20.34 8.22 129.94 1.07 21.41 16 11 O -0.50 -19.38 16.55 19.71 0.33 -19.06 16 12 N -0.58 -16.26 2.51 -885.66 -2.22 -18.48 16 13 C 0.13 3.68 5.16 86.38 0.45 4.12 16 14 C 0.00 0.11 2.42 -12.60 -0.03 0.08 16 15 H 0.12 4.07 8.14 -2.39 -0.02 4.05 16 16 C 0.24 10.05 12.20 89.45 1.09 11.14 16 17 N -0.48 -22.71 18.50 20.00 0.37 -22.34 16 18 C 0.04 1.90 4.42 29.84 0.13 2.03 16 19 C -0.54 -28.49 8.60 25.60 0.22 -28.27 16 20 H 0.05 2.74 7.59 -2.91 -0.02 2.72 16 21 C 0.02 0.84 5.46 84.65 0.46 1.30 16 22 N -0.92 -52.00 13.29 21.45 0.28 -51.71 16 23 Si 0.95 43.21 29.54 68.60 2.03 45.23 16 24 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 25 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 26 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 27 C 0.52 12.69 6.51 87.87 0.57 13.26 16 28 O -0.44 -11.34 15.67 -2.90 -0.05 -11.39 16 29 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.13 2.05 7.63 -2.91 -0.02 2.02 16 33 H 0.15 1.09 8.06 -2.91 -0.02 1.06 16 34 H 0.15 0.80 8.06 -2.91 -0.02 0.77 16 35 H 0.15 1.29 8.06 -2.91 -0.02 1.27 16 36 H 0.13 2.49 5.69 -2.91 -0.02 2.47 16 37 H 0.15 3.45 8.03 -2.39 -0.02 3.44 16 38 H 0.11 3.14 7.87 -2.38 -0.02 3.12 16 39 H 0.05 2.13 8.14 -2.38 -0.02 2.11 16 40 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 41 H 0.27 14.31 8.31 -92.71 -0.77 13.54 16 Total: -1.00 -69.83 362.21 6.87 -62.95 By element: Atomic # 1 Polarization: 5.07 SS G_CDS: 1.06 Total: 6.14 kcal Atomic # 6 Polarization: 11.37 SS G_CDS: 5.58 Total: 16.96 kcal Atomic # 7 Polarization: -90.96 SS G_CDS: -1.57 Total: -92.53 kcal Atomic # 8 Polarization: -38.52 SS G_CDS: -0.24 Total: -38.75 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.23 kcal Total: -69.83 6.87 -62.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290093367.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.788 kcal (2) G-P(sol) polarization free energy of solvation -69.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.35 seconds