Wall clock time and date at job start Tue Mar 31 2020 14:50:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50698 * 110.50842 * 2 1 4 4 C 1.38242 * 119.99389 * 271.02206 * 3 2 1 5 5 C 1.38236 * 119.99352 * 179.74464 * 4 3 2 6 6 C 1.38237 * 120.00255 * 0.52570 * 5 4 3 7 7 C 1.38232 * 119.99961 * 359.74984 * 6 5 4 8 8 C 1.38229 * 120.00336 * 91.29551 * 3 2 1 9 9 O 1.45966 * 110.56782 * 122.74654 * 2 1 3 10 10 C 1.34292 * 106.89353 * 118.56667 * 9 2 1 11 11 O 1.21462 * 123.78503 * 179.97438 * 10 9 2 12 12 N 1.33835 * 112.42770 * 0.02562 * 10 9 2 13 13 C 1.46506 * 124.33873 * 180.02562 * 12 10 9 14 14 C 1.52997 * 109.47240 * 269.97818 * 13 12 10 15 15 H 1.09003 * 109.47188 * 305.00008 * 14 13 12 16 16 C 1.47199 * 109.47397 * 64.99939 * 14 13 12 17 17 N 5.20309 * 154.39079 * 167.41870 * 2 1 3 18 18 C 1.52994 * 109.47187 * 185.00098 * 14 13 12 19 19 C 1.50708 * 109.47233 * 174.99626 * 18 14 13 20 20 H 1.07994 * 119.99842 * 0.02562 * 19 18 14 21 21 C 1.37875 * 119.99794 * 179.97438 * 19 18 14 22 22 N 1.31513 * 120.00524 * 0.02562 * 21 19 18 23 23 Si 1.86806 * 119.99704 * 180.02562 * 21 19 18 24 24 H 1.48505 * 109.46644 * 60.00359 * 23 21 19 25 25 H 1.48493 * 109.47002 * 180.02562 * 23 21 19 26 26 H 1.48493 * 109.47091 * 300.00296 * 23 21 19 27 27 C 1.34807 * 111.31981 * 359.97438 * 12 10 9 28 28 O 1.21234 * 127.19987 * 179.97438 * 27 12 10 29 29 H 1.09007 * 109.47597 * 297.95602 * 1 2 3 30 30 H 1.09004 * 109.47550 * 57.95261 * 1 2 3 31 31 H 1.08998 * 109.47622 * 177.95287 * 1 2 3 32 32 H 1.07994 * 120.00215 * 359.97438 * 4 3 2 33 33 H 1.08006 * 119.99695 * 180.29677 * 5 4 3 34 34 H 1.07997 * 120.00078 * 179.76571 * 6 5 4 35 35 H 1.07998 * 120.00017 * 179.97438 * 7 6 5 36 36 H 1.08003 * 119.99939 * 0.02562 * 8 3 2 37 37 H 1.08994 * 109.47105 * 29.98162 * 13 12 10 38 38 H 1.09000 * 109.46859 * 149.98058 * 13 12 10 39 39 H 1.08993 * 109.47224 * 295.00005 * 18 14 13 40 40 H 1.08998 * 109.47131 * 55.00175 * 18 14 13 41 41 H 0.96999 * 120.00447 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0579 1.4115 0.0000 4 6 2.2800 2.0662 -1.1971 5 6 2.7593 3.3628 -1.1970 6 6 3.0268 4.0008 -0.0002 7 6 2.8101 3.3440 1.1967 8 6 2.3254 2.0494 1.1968 9 8 2.0428 -0.7392 1.1494 10 6 2.7551 -1.7693 0.6647 11 8 3.3218 -2.5863 1.3624 12 7 2.7715 -1.7940 -0.6733 13 6 3.4693 -2.8042 -1.4727 14 6 4.8987 -2.3354 -1.7521 15 1 4.8734 -1.3517 -2.2208 16 6 5.6456 -2.2566 -0.4861 17 7 6.2219 -2.1949 0.4899 18 6 5.5873 -3.3293 -2.6894 19 6 6.9505 -2.8062 -3.0626 20 1 7.2917 -1.8597 -2.6701 21 6 7.7624 -3.5365 -3.9043 22 7 7.3472 -4.6893 -4.3819 23 14 9.4524 -2.8883 -4.3664 24 1 10.2698 -2.7176 -3.1383 25 1 10.1207 -3.8530 -5.2762 26 1 9.3099 -1.5790 -5.0521 27 6 2.0628 -0.7709 -1.1911 28 8 1.8886 -0.5195 -2.3643 29 1 -0.3634 0.4818 0.9078 30 1 -0.3634 0.5453 -0.8711 31 1 -0.3634 -1.0270 -0.0367 32 1 2.0756 1.5661 -2.1322 33 1 2.9283 3.8761 -2.1321 34 1 3.4048 5.0125 -0.0002 35 1 3.0194 3.8423 2.1317 36 1 2.1565 1.5361 2.1319 37 1 3.4964 -3.7460 -0.9248 38 1 2.9431 -2.9478 -2.4164 39 1 5.6922 -4.2905 -2.1863 40 1 4.9871 -3.4546 -3.5906 41 1 7.9186 -5.2033 -4.9738 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000290093372.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:24 Heat of formation + Delta-G solvation = -43.971050 kcal Electronic energy + Delta-G solvation = -27986.502468 eV Core-core repulsion = 24025.502353 eV Total energy + Delta-G solvation = -3961.000115 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.13822 -39.63181 -38.91721 -37.89529 -36.79590 -35.31919 -33.73087 -33.39815 -31.92947 -31.17813 -29.92337 -27.85711 -25.50130 -24.55351 -23.44803 -23.04553 -21.94580 -21.52540 -21.21789 -18.26848 -17.88882 -17.19532 -16.79431 -16.60610 -16.38549 -16.06238 -15.54608 -15.16559 -14.94056 -14.63764 -14.53625 -14.45621 -14.23178 -13.65383 -13.46502 -13.17181 -12.96886 -12.93656 -12.66758 -12.64562 -12.17706 -11.96256 -11.82900 -11.62873 -11.59964 -11.26312 -11.17911 -11.11326 -10.94962 -10.68515 -10.45748 -10.28967 -10.12130 -9.60631 -9.30124 -9.19806 -9.16669 -8.49838 -6.14336 -4.18076 0.87518 1.12047 1.24335 1.85980 2.57703 2.64283 3.29169 3.33392 3.33455 3.37349 3.50087 3.56868 3.62665 3.85673 4.26010 4.37038 4.54070 4.66779 4.74519 4.80436 4.88286 5.05944 5.09385 5.15664 5.20841 5.22930 5.24290 5.30985 5.44413 5.52481 5.60871 5.65548 5.78082 6.12060 6.14710 6.17035 6.23885 6.30126 6.65540 6.79054 6.92591 7.30529 7.40680 7.49455 7.79519 8.14795 8.38839 8.84909 9.47664 10.96476 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.013615 B = 0.003767 C = 0.003432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2056.079481 B = 7431.334612 C = 8156.549994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.112 3.888 3 C -0.105 4.105 4 C -0.101 4.101 5 C -0.117 4.117 6 C -0.106 4.106 7 C -0.122 4.122 8 C -0.085 4.085 9 O -0.300 6.300 10 C 0.643 3.357 11 O -0.456 6.456 12 N -0.581 5.581 13 C 0.122 3.878 14 C -0.007 4.007 15 H 0.106 0.894 16 C 0.226 3.774 17 N -0.446 5.446 18 C 0.035 3.965 19 C -0.529 4.529 20 H 0.056 0.944 21 C 0.065 3.935 22 N -0.890 5.890 23 Si 0.893 3.107 24 H -0.276 1.276 25 H -0.285 1.285 26 H -0.275 1.275 27 C 0.516 3.484 28 O -0.438 6.438 29 H 0.089 0.911 30 H 0.095 0.905 31 H 0.076 0.924 32 H 0.143 0.857 33 H 0.130 0.870 34 H 0.126 0.874 35 H 0.127 0.873 36 H 0.131 0.869 37 H 0.108 0.892 38 H 0.121 0.879 39 H 0.031 0.969 40 H 0.044 0.956 41 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.714 14.198 6.260 23.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.071 3.929 3 C -0.105 4.105 4 C -0.119 4.119 5 C -0.135 4.135 6 C -0.124 4.124 7 C -0.140 4.140 8 C -0.103 4.103 9 O -0.211 6.211 10 C 0.397 3.603 11 O -0.335 6.335 12 N -0.335 5.335 13 C 0.002 3.998 14 C -0.029 4.029 15 H 0.124 0.876 16 C -0.092 4.092 17 N -0.122 5.122 18 C -0.003 4.003 19 C -0.567 4.567 20 H 0.074 0.926 21 C -0.137 4.137 22 N -0.528 5.528 23 Si 0.720 3.280 24 H -0.202 1.202 25 H -0.211 1.211 26 H -0.200 1.200 27 C 0.302 3.698 28 O -0.306 6.306 29 H 0.108 0.892 30 H 0.114 0.886 31 H 0.095 0.905 32 H 0.160 0.840 33 H 0.148 0.852 34 H 0.144 0.856 35 H 0.145 0.855 36 H 0.149 0.851 37 H 0.126 0.874 38 H 0.139 0.861 39 H 0.050 0.950 40 H 0.062 0.938 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -16.642 13.903 7.603 22.979 hybrid contribution 0.976 0.187 -0.690 1.210 sum -15.665 14.090 6.913 22.174 Atomic orbital electron populations 1.21960 0.87583 1.04571 1.05470 1.21945 0.97886 0.90575 0.82516 1.19133 1.04102 0.92203 0.95108 1.21353 0.97384 0.95297 0.97892 1.21169 0.99162 0.94609 0.98537 1.21318 0.98422 1.00101 0.92582 1.21166 0.99704 0.94665 0.98492 1.20972 0.97231 0.94692 0.97453 1.87818 1.63714 1.38468 1.31099 1.18334 0.78614 0.81664 0.81689 1.91162 1.43363 1.37719 1.61254 1.47032 1.48772 1.29104 1.08628 1.22177 0.91656 0.89580 0.96366 1.19610 0.90158 1.04948 0.88228 0.87641 1.28869 0.93682 0.92902 0.93754 1.80986 1.09597 1.09062 1.12574 1.19164 0.95548 0.92729 0.92870 1.21016 1.00257 1.06189 1.29198 0.92562 1.24922 0.98370 0.94747 0.95691 1.69914 1.37363 1.12854 1.32682 0.86631 0.84069 0.78787 0.78492 1.20194 1.21078 1.20009 1.20899 0.77827 0.80735 0.90360 1.90793 1.56044 1.67945 1.15859 0.89218 0.88597 0.90501 0.83975 0.85241 0.85636 0.85468 0.85096 0.87399 0.86136 0.95034 0.93823 0.92607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.03 9.01 37.16 0.33 -0.70 16 2 C 0.11 1.23 1.22 -92.50 -0.11 1.12 16 3 C -0.10 -1.15 4.89 -104.62 -0.51 -1.67 16 4 C -0.10 -1.09 9.18 -39.58 -0.36 -1.45 16 5 C -0.12 -1.10 10.05 -39.58 -0.40 -1.50 16 6 C -0.11 -0.92 10.05 -39.58 -0.40 -1.32 16 7 C -0.12 -1.10 10.05 -39.58 -0.40 -1.50 16 8 C -0.09 -0.88 9.38 -39.58 -0.37 -1.25 16 9 O -0.30 -3.98 9.82 -39.13 -0.38 -4.36 16 10 C 0.64 10.12 8.22 53.64 0.44 10.56 16 11 O -0.46 -8.71 16.56 -19.00 -0.31 -9.03 16 12 N -0.58 -8.32 2.50 -120.80 -0.30 -8.62 16 13 C 0.12 1.81 5.15 -4.04 -0.02 1.78 16 14 C -0.01 -0.13 2.42 -93.41 -0.23 -0.36 16 15 H 0.11 1.90 8.14 -51.93 -0.42 1.48 16 16 C 0.23 4.88 12.21 -20.79 -0.25 4.63 16 17 N -0.45 -10.53 18.50 42.12 0.78 -9.75 16 18 C 0.04 0.81 4.42 -27.88 -0.12 0.68 16 19 C -0.53 -14.00 8.60 -34.44 -0.30 -14.29 16 20 H 0.06 1.49 7.59 -52.49 -0.40 1.10 16 21 C 0.07 1.78 5.46 -17.82 -0.10 1.69 16 22 N -0.89 -25.14 13.29 55.43 0.74 -24.40 16 23 Si 0.89 21.25 29.54 -169.99 -5.02 16.23 16 24 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 25 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 26 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 27 C 0.52 6.62 6.53 -10.55 -0.07 6.55 16 28 O -0.44 -5.97 15.69 5.60 0.09 -5.88 16 29 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.14 1.56 5.77 -52.49 -0.30 1.26 16 33 H 0.13 0.96 8.06 -52.48 -0.42 0.54 16 34 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 35 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 36 H 0.13 1.26 7.57 -52.48 -0.40 0.86 16 37 H 0.11 1.57 7.87 -51.93 -0.41 1.16 16 38 H 0.12 1.51 8.02 -51.93 -0.42 1.09 16 39 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 40 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 362.20 15.07 5.46 5.46 Total: -1.00 -32.84 362.20 -6.69 -39.52 By element: Atomic # 1 Polarization: 2.73 SS G_CDS: -4.86 Total: -2.14 kcal Atomic # 6 Polarization: 5.84 SS G_CDS: -2.86 Total: 2.97 kcal Atomic # 7 Polarization: -43.99 SS G_CDS: 1.21 Total: -42.78 kcal Atomic # 8 Polarization: -18.67 SS G_CDS: -0.61 Total: -19.28 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -32.84 -6.69 -39.52 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290093372.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.446 kcal (2) G-P(sol) polarization free energy of solvation -32.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds