Wall clock time and date at job start Tue Mar 31 2020 14:50:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50698 * 110.50842 * 2 1 4 4 C 1.38242 * 119.99389 * 271.02206 * 3 2 1 5 5 C 1.38236 * 119.99352 * 179.74464 * 4 3 2 6 6 C 1.38237 * 120.00255 * 0.52570 * 5 4 3 7 7 C 1.38232 * 119.99961 * 359.74984 * 6 5 4 8 8 C 1.38229 * 120.00336 * 91.29551 * 3 2 1 9 9 O 1.45966 * 110.56782 * 122.74654 * 2 1 3 10 10 C 1.34292 * 106.89353 * 118.56667 * 9 2 1 11 11 O 1.21462 * 123.78503 * 179.97438 * 10 9 2 12 12 N 1.33835 * 112.42770 * 0.02562 * 10 9 2 13 13 C 1.46506 * 124.33873 * 180.02562 * 12 10 9 14 14 C 1.52997 * 109.47240 * 269.97818 * 13 12 10 15 15 H 1.09003 * 109.47188 * 305.00008 * 14 13 12 16 16 C 1.47199 * 109.47397 * 64.99939 * 14 13 12 17 17 N 5.20309 * 154.39079 * 167.41870 * 2 1 3 18 18 C 1.52994 * 109.47187 * 185.00098 * 14 13 12 19 19 C 1.50708 * 109.47233 * 174.99626 * 18 14 13 20 20 H 1.07994 * 119.99842 * 0.02562 * 19 18 14 21 21 C 1.37875 * 119.99794 * 179.97438 * 19 18 14 22 22 N 1.31513 * 120.00524 * 0.02562 * 21 19 18 23 23 Si 1.86806 * 119.99704 * 180.02562 * 21 19 18 24 24 H 1.48505 * 109.46644 * 60.00359 * 23 21 19 25 25 H 1.48493 * 109.47002 * 180.02562 * 23 21 19 26 26 H 1.48493 * 109.47091 * 300.00296 * 23 21 19 27 27 C 1.34807 * 111.31981 * 359.97438 * 12 10 9 28 28 O 1.21234 * 127.19987 * 179.97438 * 27 12 10 29 29 H 1.09007 * 109.47597 * 297.95602 * 1 2 3 30 30 H 1.09004 * 109.47550 * 57.95261 * 1 2 3 31 31 H 1.08998 * 109.47622 * 177.95287 * 1 2 3 32 32 H 1.07994 * 120.00215 * 359.97438 * 4 3 2 33 33 H 1.08006 * 119.99695 * 180.29677 * 5 4 3 34 34 H 1.07997 * 120.00078 * 179.76571 * 6 5 4 35 35 H 1.07998 * 120.00017 * 179.97438 * 7 6 5 36 36 H 1.08003 * 119.99939 * 0.02562 * 8 3 2 37 37 H 1.08994 * 109.47105 * 29.98162 * 13 12 10 38 38 H 1.09000 * 109.46859 * 149.98058 * 13 12 10 39 39 H 1.08993 * 109.47224 * 295.00005 * 18 14 13 40 40 H 1.08998 * 109.47131 * 55.00175 * 18 14 13 41 41 H 0.96999 * 120.00447 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0579 1.4115 0.0000 4 6 2.2800 2.0662 -1.1971 5 6 2.7593 3.3628 -1.1970 6 6 3.0268 4.0008 -0.0002 7 6 2.8101 3.3440 1.1967 8 6 2.3254 2.0494 1.1968 9 8 2.0428 -0.7392 1.1494 10 6 2.7551 -1.7693 0.6647 11 8 3.3218 -2.5863 1.3624 12 7 2.7715 -1.7940 -0.6733 13 6 3.4693 -2.8042 -1.4727 14 6 4.8987 -2.3354 -1.7521 15 1 4.8734 -1.3517 -2.2208 16 6 5.6456 -2.2566 -0.4861 17 7 6.2219 -2.1949 0.4899 18 6 5.5873 -3.3293 -2.6894 19 6 6.9505 -2.8062 -3.0626 20 1 7.2917 -1.8597 -2.6701 21 6 7.7624 -3.5365 -3.9043 22 7 7.3472 -4.6893 -4.3819 23 14 9.4524 -2.8883 -4.3664 24 1 10.2698 -2.7176 -3.1383 25 1 10.1207 -3.8530 -5.2762 26 1 9.3099 -1.5790 -5.0521 27 6 2.0628 -0.7709 -1.1911 28 8 1.8886 -0.5195 -2.3643 29 1 -0.3634 0.4818 0.9078 30 1 -0.3634 0.5453 -0.8711 31 1 -0.3634 -1.0270 -0.0367 32 1 2.0756 1.5661 -2.1322 33 1 2.9283 3.8761 -2.1321 34 1 3.4048 5.0125 -0.0002 35 1 3.0194 3.8423 2.1317 36 1 2.1565 1.5361 2.1319 37 1 3.4964 -3.7460 -0.9248 38 1 2.9431 -2.9478 -2.4164 39 1 5.6922 -4.2905 -2.1863 40 1 4.9871 -3.4546 -3.5906 41 1 7.9186 -5.2033 -4.9738 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000290093372.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:21 Heat of formation + Delta-G solvation = -62.206824 kcal Electronic energy + Delta-G solvation = -27987.293231 eV Core-core repulsion = 24025.502353 eV Total energy + Delta-G solvation = -3961.790878 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 2.93 seconds Orbital eigenvalues (eV) -44.21916 -40.54644 -39.96026 -39.07947 -38.26380 -36.72977 -35.56329 -34.22040 -33.71542 -31.90031 -30.63444 -29.45554 -26.68382 -25.92937 -24.41917 -23.91938 -23.72338 -22.41573 -22.28727 -19.29487 -19.14637 -18.51662 -18.22153 -18.05455 -17.47172 -17.23488 -16.64730 -16.42822 -16.12443 -15.97528 -15.61675 -15.39683 -15.18712 -15.03056 -14.60074 -14.39700 -14.28141 -14.00541 -13.71008 -13.63110 -13.55251 -13.29272 -13.20067 -13.01001 -12.83798 -12.75502 -12.69883 -12.48655 -12.21101 -12.17265 -11.95861 -11.74635 -11.46553 -11.29420 -10.97712 -10.57296 -9.93057 -9.90445 -8.22216 -6.30557 0.05548 0.23082 0.39805 0.72682 1.38836 1.40205 1.41529 1.48447 1.68057 1.84947 1.88943 2.37040 2.40092 2.74355 2.99390 3.05439 3.14719 3.46250 3.68039 3.77260 3.93955 3.98435 4.07615 4.16080 4.25039 4.40193 4.48846 4.52653 4.53754 4.61052 4.66674 4.72036 4.89824 4.99405 5.07258 5.38616 5.39215 5.44701 5.52327 5.53404 5.68720 5.73504 5.83685 5.96857 6.13443 6.32095 6.65057 6.80894 7.37810 8.88362 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.013615 B = 0.003767 C = 0.003432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2056.079481 B = 7431.334612 C = 8156.549994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.114 3.886 3 C -0.119 4.119 4 C -0.116 4.116 5 C -0.123 4.123 6 C -0.107 4.107 7 C -0.125 4.125 8 C -0.100 4.100 9 O -0.298 6.298 10 C 0.647 3.353 11 O -0.497 6.497 12 N -0.581 5.581 13 C 0.127 3.873 14 C 0.003 3.997 15 H 0.117 0.883 16 C 0.235 3.765 17 N -0.484 5.484 18 C 0.042 3.958 19 C -0.543 4.543 20 H 0.050 0.950 21 C 0.018 3.982 22 N -0.918 5.918 23 Si 0.946 3.054 24 H -0.283 1.283 25 H -0.279 1.279 26 H -0.263 1.263 27 C 0.518 3.482 28 O -0.443 6.443 29 H 0.105 0.895 30 H 0.109 0.891 31 H 0.084 0.916 32 H 0.137 0.863 33 H 0.147 0.853 34 H 0.152 0.848 35 H 0.149 0.851 36 H 0.132 0.868 37 H 0.110 0.890 38 H 0.150 0.850 39 H 0.011 0.989 40 H 0.049 0.951 41 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.666 16.096 5.835 25.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.074 3.926 3 C -0.119 4.119 4 C -0.134 4.134 5 C -0.141 4.141 6 C -0.125 4.125 7 C -0.143 4.143 8 C -0.118 4.118 9 O -0.209 6.209 10 C 0.402 3.598 11 O -0.379 6.379 12 N -0.335 5.335 13 C 0.007 3.993 14 C -0.020 4.020 15 H 0.134 0.866 16 C -0.082 4.082 17 N -0.161 5.161 18 C 0.004 3.996 19 C -0.581 4.581 20 H 0.068 0.932 21 C -0.182 4.182 22 N -0.558 5.558 23 Si 0.772 3.228 24 H -0.209 1.209 25 H -0.204 1.204 26 H -0.188 1.188 27 C 0.305 3.695 28 O -0.311 6.311 29 H 0.124 0.876 30 H 0.128 0.872 31 H 0.103 0.897 32 H 0.154 0.846 33 H 0.165 0.835 34 H 0.169 0.831 35 H 0.166 0.834 36 H 0.150 0.850 37 H 0.128 0.872 38 H 0.167 0.833 39 H 0.030 0.970 40 H 0.067 0.933 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -17.624 15.839 7.162 24.754 hybrid contribution 1.249 -0.308 -0.565 1.405 sum -16.375 15.531 6.597 23.513 Atomic orbital electron populations 1.22080 0.84711 1.05612 1.06939 1.22262 0.99827 0.90025 0.80512 1.19203 1.05057 0.92074 0.95596 1.21401 0.98350 0.96113 0.97515 1.21465 0.98565 0.94243 0.99789 1.21666 0.97559 1.01197 0.92072 1.21489 0.98828 0.94245 0.99749 1.21119 0.97863 0.95499 0.97283 1.87817 1.63184 1.37800 1.32112 1.18366 0.78127 0.81561 0.81780 1.91133 1.45208 1.39452 1.62129 1.46984 1.48858 1.29486 1.08200 1.22103 0.89599 0.89623 0.97943 1.19583 0.91749 1.04502 0.86147 0.86576 1.29440 0.92968 0.91810 0.93934 1.80974 1.10879 1.10302 1.13912 1.18971 0.94572 0.92527 0.93568 1.21409 1.01971 1.05952 1.28802 0.93183 1.25632 1.01564 0.95065 0.95957 1.69995 1.38555 1.13786 1.33432 0.85787 0.80231 0.78837 0.77970 1.20897 1.20420 1.18798 1.21195 0.77282 0.80248 0.90792 1.90795 1.56138 1.67913 1.16281 0.87638 0.87219 0.89681 0.84566 0.83504 0.83076 0.83365 0.84989 0.87160 0.83268 0.97050 0.93294 0.92517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 9.01 71.98 0.65 -1.10 16 2 C 0.11 2.36 1.22 -12.01 -0.01 2.34 16 3 C -0.12 -2.46 4.89 -19.87 -0.10 -2.55 16 4 C -0.12 -2.33 9.18 22.27 0.20 -2.12 16 5 C -0.12 -2.06 10.05 22.27 0.22 -1.84 16 6 C -0.11 -1.59 10.05 22.27 0.22 -1.36 16 7 C -0.13 -2.00 10.05 22.27 0.22 -1.77 16 8 C -0.10 -1.92 9.38 22.27 0.21 -1.71 16 9 O -0.30 -7.71 9.82 -52.30 -0.51 -8.23 16 10 C 0.65 20.16 8.22 129.94 1.07 21.23 16 11 O -0.50 -19.25 16.56 19.73 0.33 -18.93 16 12 N -0.58 -16.09 2.50 -886.14 -2.21 -18.31 16 13 C 0.13 3.64 5.15 86.38 0.45 4.09 16 14 C 0.00 0.10 2.42 -12.60 -0.03 0.06 16 15 H 0.12 4.07 8.14 -2.39 -0.02 4.05 16 16 C 0.24 10.24 12.21 89.45 1.09 11.33 16 17 N -0.48 -23.15 18.50 19.99 0.37 -22.78 16 18 C 0.04 1.92 4.42 29.85 0.13 2.05 16 19 C -0.54 -28.72 8.60 25.60 0.22 -28.50 16 20 H 0.05 2.65 7.59 -2.91 -0.02 2.63 16 21 C 0.02 0.95 5.46 84.65 0.46 1.42 16 22 N -0.92 -51.88 13.29 21.45 0.28 -51.60 16 23 Si 0.95 43.30 29.54 68.60 2.03 45.33 16 24 H -0.28 -13.17 7.11 99.48 0.71 -12.47 16 25 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 26 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 27 C 0.52 12.55 6.53 87.93 0.57 13.13 16 28 O -0.44 -11.32 15.69 -2.89 -0.05 -11.36 16 29 H 0.10 1.04 8.14 -2.38 -0.02 1.02 16 30 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.14 2.83 5.77 -2.91 -0.02 2.82 16 33 H 0.15 1.85 8.06 -2.91 -0.02 1.82 16 34 H 0.15 1.41 8.06 -2.91 -0.02 1.38 16 35 H 0.15 1.65 8.06 -2.91 -0.02 1.63 16 36 H 0.13 2.42 7.57 -2.91 -0.02 2.40 16 37 H 0.11 3.15 7.87 -2.39 -0.02 3.13 16 38 H 0.15 3.42 8.02 -2.39 -0.02 3.41 16 39 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 40 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 41 H 0.27 14.30 8.31 -92.71 -0.77 13.53 16 Total: -1.00 -70.45 362.20 6.88 -63.57 By element: Atomic # 1 Polarization: 6.55 SS G_CDS: 1.06 Total: 7.62 kcal Atomic # 6 Polarization: 9.10 SS G_CDS: 5.58 Total: 14.69 kcal Atomic # 7 Polarization: -91.13 SS G_CDS: -1.56 Total: -92.69 kcal Atomic # 8 Polarization: -38.28 SS G_CDS: -0.23 Total: -38.51 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.33 kcal Total: -70.45 6.88 -63.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290093372.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.360 kcal (2) G-P(sol) polarization free energy of solvation -70.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.93 seconds