Wall clock time and date at job start Tue Mar 31 2020 15:22:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50698 * 119.99932 * 2 1 4 4 N 1.46503 * 109.46802 * 125.00375 * 3 2 1 5 5 C 1.46502 * 119.99859 * 90.00154 * 4 3 2 6 6 C 1.50700 * 109.47273 * 90.00287 * 5 4 3 7 7 H 1.08000 * 120.00135 * 359.97438 * 6 5 4 8 8 C 1.37871 * 119.99957 * 180.02562 * 6 5 4 9 9 N 1.31518 * 119.99814 * 179.97438 * 8 6 5 10 10 Si 1.86799 * 120.00510 * 359.97438 * 8 6 5 11 11 H 1.48501 * 109.47217 * 89.99975 * 10 8 6 12 12 H 1.48493 * 109.47337 * 210.00574 * 10 8 6 13 13 H 1.48504 * 109.46624 * 330.00496 * 10 8 6 14 14 C 1.34772 * 120.00187 * 269.72625 * 4 3 2 15 15 O 1.21591 * 120.00262 * 180.02562 * 14 4 3 16 16 N 1.34777 * 119.99621 * 0.02562 * 14 4 3 17 17 C 1.39951 * 119.99658 * 174.38367 * 16 14 4 18 18 C 1.38882 * 120.06920 * 335.19002 * 17 16 14 19 19 C 1.38099 * 119.92604 * 179.77319 * 18 17 16 20 20 C 1.38299 * 120.07096 * 0.50167 * 19 18 17 21 21 C 1.38259 * 120.14164 * 359.75145 * 20 19 18 22 22 C 1.38143 * 120.06638 * 359.97438 * 21 20 19 23 23 C 1.50700 * 120.03067 * 179.97438 * 22 21 20 24 24 F 1.39903 * 109.47493 * 0.02562 * 23 22 21 25 25 F 1.39899 * 109.47230 * 120.02857 * 23 22 21 26 26 F 1.39901 * 109.46923 * 240.02249 * 23 22 21 27 27 H 1.08000 * 119.99670 * 359.97438 * 1 2 3 28 28 H 1.08000 * 119.99645 * 179.97438 * 1 2 3 29 29 H 1.08007 * 119.99883 * 180.02562 * 2 1 3 30 30 H 1.08997 * 109.47273 * 5.00764 * 3 2 1 31 31 H 1.08996 * 109.47300 * 244.99931 * 3 2 1 32 32 H 1.09002 * 109.47199 * 210.00353 * 5 4 3 33 33 H 1.09005 * 109.47343 * 329.99689 * 5 4 3 34 34 H 0.97004 * 119.99843 * 179.97438 * 9 8 6 35 35 H 0.96998 * 120.00439 * 354.38222 * 16 14 4 36 36 H 1.07996 * 120.03969 * 359.97438 * 18 17 16 37 37 H 1.08004 * 119.96348 * 180.25625 * 19 18 17 38 38 H 1.07996 * 119.93140 * 179.77205 * 20 19 18 39 39 H 1.07997 * 119.96490 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3318 1.1314 5 6 4.3590 0.8255 0.9693 6 6 5.2617 1.9479 0.5259 7 1 4.8587 2.9391 0.3791 8 6 6.6017 1.7091 0.3066 9 7 7.3894 2.6885 -0.0808 10 14 7.2988 -0.0054 0.5598 11 1 7.2095 -0.7686 -0.7109 12 1 8.7200 0.0949 0.9783 13 1 6.5206 -0.7053 1.6133 14 6 2.5956 1.8271 2.3198 15 8 3.3678 1.8497 3.2587 16 7 1.3412 2.2975 2.4675 17 6 0.8898 2.7026 3.7288 18 6 1.4700 2.1789 4.8768 19 6 1.0255 2.5843 6.1198 20 6 -0.0033 3.5029 6.2222 21 6 -0.5865 4.0222 5.0813 22 6 -0.1425 3.6250 3.8349 23 6 -0.7792 4.1911 2.5918 24 9 -1.7876 5.0912 2.9527 25 9 0.1899 4.8561 1.8330 26 9 -1.3309 3.1514 1.8356 27 1 -0.5399 0.9353 0.0004 28 1 -0.5399 -0.9353 -0.0004 29 1 1.8501 -0.9354 -0.0004 30 1 1.3586 2.1316 0.0897 31 1 2.6213 1.4026 -0.9313 32 1 4.7142 0.4275 1.9198 33 1 4.3667 0.0350 0.2189 34 1 8.3323 2.5206 -0.2347 35 1 0.7513 2.3552 1.6997 36 1 2.2701 1.4579 4.7975 37 1 1.4790 2.1805 7.0130 38 1 -0.3516 3.8155 7.1955 39 1 -1.3899 4.7390 5.1646 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291654128.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:22:25 Heat of formation + Delta-G solvation = -113.553124 kcal Electronic energy + Delta-G solvation = -28876.743678 eV Core-core repulsion = 24370.869518 eV Total energy + Delta-G solvation = -4505.874161 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.114 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -50.28438 -47.82287 -47.69169 -40.65597 -38.82208 -36.07091 -34.80296 -33.27525 -32.22794 -31.93281 -29.92746 -28.03354 -26.09748 -25.71286 -23.53880 -22.38922 -21.75157 -20.35056 -19.27789 -18.87455 -18.57770 -18.41778 -17.67632 -17.16091 -16.95715 -15.58044 -15.31934 -15.00421 -14.80121 -14.72569 -14.53940 -14.40225 -14.18930 -14.10055 -13.88460 -13.86209 -13.81906 -13.47954 -13.38817 -12.93758 -12.74311 -12.49301 -11.98028 -11.84899 -11.54080 -11.43160 -11.37091 -10.99291 -10.60994 -10.49648 -10.13801 -9.74437 -9.53619 -9.37103 -9.18944 -8.63048 -8.24068 -7.82916 -6.11940 -4.11666 0.88876 1.27061 2.20875 2.56445 2.85930 3.24206 3.33301 3.33946 3.35568 3.64217 3.72545 3.90408 4.18935 4.34367 4.35940 4.73167 4.90297 4.96277 5.07345 5.15206 5.20235 5.30836 5.39103 5.45782 5.72423 5.86026 5.95436 6.04356 6.10997 6.33708 6.40141 6.46727 6.58520 6.71080 6.78358 6.90933 7.08975 7.28565 7.54965 8.21694 8.42024 8.88270 8.94045 9.47075 11.01360 Molecular weight = 328.11amu Principal moments of inertia in cm(-1) A = 0.014421 B = 0.004187 C = 0.003822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1941.196456 B = 6685.657105 C = 7323.559737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.164 4.164 3 C 0.132 3.868 4 N -0.593 5.593 5 C 0.230 3.770 6 C -0.533 4.533 7 H 0.075 0.925 8 C 0.074 3.926 9 N -0.895 5.895 10 Si 0.874 3.126 11 H -0.275 1.275 12 H -0.283 1.283 13 H -0.263 1.263 14 C 0.705 3.295 15 O -0.558 6.558 16 N -0.692 5.692 17 C 0.240 3.760 18 C -0.137 4.137 19 C -0.064 4.064 20 C -0.155 4.155 21 C -0.052 4.052 22 C -0.235 4.235 23 C 0.509 3.491 24 F -0.176 7.176 25 F -0.172 7.172 26 F -0.182 7.182 27 H 0.094 0.906 28 H 0.099 0.901 29 H 0.115 0.885 30 H 0.064 0.936 31 H 0.103 0.897 32 H 0.045 0.955 33 H 0.030 0.970 34 H 0.265 0.735 35 H 0.403 0.597 36 H 0.161 0.839 37 H 0.133 0.867 38 H 0.131 0.869 39 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.685 -1.467 7.162 20.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.183 4.183 3 C 0.009 3.991 4 N -0.326 5.326 5 C 0.110 3.890 6 C -0.571 4.571 7 H 0.093 0.907 8 C -0.129 4.129 9 N -0.533 5.533 10 Si 0.701 3.299 11 H -0.201 1.201 12 H -0.209 1.209 13 H -0.188 1.188 14 C 0.408 3.592 15 O -0.434 6.434 16 N -0.339 5.339 17 C 0.141 3.859 18 C -0.158 4.158 19 C -0.082 4.082 20 C -0.174 4.174 21 C -0.071 4.071 22 C -0.241 4.241 23 C 0.455 3.545 24 F -0.158 7.158 25 F -0.153 7.153 26 F -0.163 7.163 27 H 0.113 0.887 28 H 0.117 0.883 29 H 0.133 0.867 30 H 0.082 0.918 31 H 0.121 0.879 32 H 0.063 0.937 33 H 0.048 0.952 34 H 0.075 0.925 35 H 0.242 0.758 36 H 0.179 0.821 37 H 0.151 0.849 38 H 0.149 0.851 39 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -18.808 -1.467 7.617 20.345 hybrid contribution 0.063 -0.552 -0.751 0.935 sum -18.745 -2.019 6.866 20.065 Atomic orbital electron populations 1.23816 0.95675 1.01861 1.01560 1.23514 0.96106 0.99682 0.98989 1.20623 0.92273 0.93961 0.92291 1.47252 1.14533 1.63048 1.07814 1.19685 0.76497 0.95042 0.97788 1.21329 0.93033 0.96701 1.46066 0.90671 1.24836 0.96658 0.96974 0.94388 1.69898 1.05445 1.31753 1.46225 0.86876 0.79044 0.84971 0.79014 1.20062 1.20891 1.18800 1.15781 0.80470 0.78594 0.84398 1.90867 1.52466 1.61000 1.39078 1.43232 1.15098 1.66678 1.08914 1.17264 0.91815 0.91015 0.85829 1.21614 1.01945 1.02176 0.90029 1.21313 0.94454 0.94988 0.97493 1.21031 0.98399 0.99855 0.98115 1.20715 0.98456 0.97662 0.90220 1.19610 1.05451 1.05717 0.93281 1.18285 0.76307 0.75833 0.84086 1.93147 1.62028 1.68962 1.91634 1.93272 1.62844 1.81328 1.77885 1.93173 1.86314 1.58411 1.78448 0.88729 0.88296 0.86740 0.91759 0.87894 0.93744 0.95185 0.92495 0.75809 0.82132 0.84933 0.85132 0.84525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.13 14.32 29.01 0.42 -1.71 16 2 C -0.16 -2.16 9.85 -36.03 -0.35 -2.52 16 3 C 0.13 2.09 5.67 -5.19 -0.03 2.06 16 4 N -0.59 -11.99 2.44 -182.18 -0.44 -12.44 16 5 C 0.23 5.43 4.23 -5.19 -0.02 5.41 16 6 C -0.53 -15.00 9.94 -34.44 -0.34 -15.34 16 7 H 0.08 2.35 8.06 -52.49 -0.42 1.93 16 8 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 9 N -0.90 -27.33 13.96 55.43 0.77 -26.55 16 10 Si 0.87 21.00 27.47 -169.99 -4.67 16.33 16 11 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 12 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 13 H -0.26 -6.13 6.54 56.52 0.37 -5.76 16 14 C 0.71 14.49 8.08 -86.92 -0.70 13.79 16 15 O -0.56 -13.22 13.09 5.29 0.07 -13.15 16 16 N -0.69 -11.58 4.78 -14.22 -0.07 -11.65 16 17 C 0.24 3.73 6.33 -83.69 -0.53 3.20 16 18 C -0.14 -2.06 8.72 -39.39 -0.34 -2.41 16 19 C -0.06 -0.73 10.04 -39.61 -0.40 -1.13 16 20 C -0.15 -1.55 10.04 -39.55 -0.40 -1.95 16 21 C -0.05 -0.57 9.43 -39.61 -0.37 -0.94 16 22 C -0.24 -3.15 5.38 -104.43 -0.56 -3.71 16 23 C 0.51 6.60 2.82 36.01 0.10 6.70 16 24 F -0.18 -2.07 15.98 2.25 0.04 -2.04 16 25 F -0.17 -2.55 16.74 2.25 0.04 -2.51 16 26 F -0.18 -2.24 15.88 2.25 0.04 -2.21 16 27 H 0.09 0.98 7.84 -52.49 -0.41 0.57 16 28 H 0.10 0.95 8.06 -52.49 -0.42 0.53 16 29 H 0.11 1.51 8.06 -52.48 -0.42 1.08 16 30 H 0.06 0.91 5.92 -51.93 -0.31 0.61 16 31 H 0.10 1.65 8.07 -51.93 -0.42 1.23 16 32 H 0.04 1.12 6.48 -51.93 -0.34 0.78 16 33 H 0.03 0.66 7.50 -51.93 -0.39 0.27 16 34 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 35 H 0.40 6.02 4.31 -40.82 -0.18 5.85 16 36 H 0.16 2.75 5.79 -52.49 -0.30 2.44 16 37 H 0.13 1.18 8.06 -52.48 -0.42 0.76 16 38 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 39 H 0.14 1.18 7.15 -52.49 -0.38 0.80 16 LS Contribution 343.06 15.07 5.17 5.17 Total: -1.00 -32.41 343.06 -6.69 -39.10 By element: Atomic # 1 Polarization: 10.45 SS G_CDS: -4.00 Total: 6.45 kcal Atomic # 6 Polarization: 7.13 SS G_CDS: -3.63 Total: 3.49 kcal Atomic # 7 Polarization: -50.89 SS G_CDS: 0.26 Total: -50.63 kcal Atomic # 8 Polarization: -13.22 SS G_CDS: 0.07 Total: -13.15 kcal Atomic # 9 Polarization: -6.86 SS G_CDS: 0.11 Total: -6.76 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -4.67 Total: 16.33 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -32.41 -6.69 -39.10 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291654128.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.450 kcal (2) G-P(sol) polarization free energy of solvation -32.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds