Wall clock time and date at job start Tue Mar 31 2020 15:22:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50698 * 119.99932 * 2 1 4 4 N 1.46503 * 109.46802 * 125.00375 * 3 2 1 5 5 C 1.46502 * 119.99859 * 90.00154 * 4 3 2 6 6 C 1.50700 * 109.47273 * 90.00287 * 5 4 3 7 7 H 1.08000 * 120.00135 * 359.97438 * 6 5 4 8 8 C 1.37871 * 119.99957 * 180.02562 * 6 5 4 9 9 N 1.31518 * 119.99814 * 179.97438 * 8 6 5 10 10 Si 1.86799 * 120.00510 * 359.97438 * 8 6 5 11 11 H 1.48501 * 109.47217 * 89.99975 * 10 8 6 12 12 H 1.48493 * 109.47337 * 210.00574 * 10 8 6 13 13 H 1.48504 * 109.46624 * 330.00496 * 10 8 6 14 14 C 1.34772 * 120.00187 * 269.72625 * 4 3 2 15 15 O 1.21591 * 120.00262 * 180.02562 * 14 4 3 16 16 N 1.34777 * 119.99621 * 0.02562 * 14 4 3 17 17 C 1.39951 * 119.99658 * 174.38367 * 16 14 4 18 18 C 1.38882 * 120.06920 * 335.19002 * 17 16 14 19 19 C 1.38099 * 119.92604 * 179.77319 * 18 17 16 20 20 C 1.38299 * 120.07096 * 0.50167 * 19 18 17 21 21 C 1.38259 * 120.14164 * 359.75145 * 20 19 18 22 22 C 1.38143 * 120.06638 * 359.97438 * 21 20 19 23 23 C 1.50700 * 120.03067 * 179.97438 * 22 21 20 24 24 F 1.39903 * 109.47493 * 0.02562 * 23 22 21 25 25 F 1.39899 * 109.47230 * 120.02857 * 23 22 21 26 26 F 1.39901 * 109.46923 * 240.02249 * 23 22 21 27 27 H 1.08000 * 119.99670 * 359.97438 * 1 2 3 28 28 H 1.08000 * 119.99645 * 179.97438 * 1 2 3 29 29 H 1.08007 * 119.99883 * 180.02562 * 2 1 3 30 30 H 1.08997 * 109.47273 * 5.00764 * 3 2 1 31 31 H 1.08996 * 109.47300 * 244.99931 * 3 2 1 32 32 H 1.09002 * 109.47199 * 210.00353 * 5 4 3 33 33 H 1.09005 * 109.47343 * 329.99689 * 5 4 3 34 34 H 0.97004 * 119.99843 * 179.97438 * 9 8 6 35 35 H 0.96998 * 120.00439 * 354.38222 * 16 14 4 36 36 H 1.07996 * 120.03969 * 359.97438 * 18 17 16 37 37 H 1.08004 * 119.96348 * 180.25625 * 19 18 17 38 38 H 1.07996 * 119.93140 * 179.77205 * 20 19 18 39 39 H 1.07997 * 119.96490 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3318 1.1314 5 6 4.3590 0.8255 0.9693 6 6 5.2617 1.9479 0.5259 7 1 4.8587 2.9391 0.3791 8 6 6.6017 1.7091 0.3066 9 7 7.3894 2.6885 -0.0808 10 14 7.2988 -0.0054 0.5598 11 1 7.2095 -0.7686 -0.7109 12 1 8.7200 0.0949 0.9783 13 1 6.5206 -0.7053 1.6133 14 6 2.5956 1.8271 2.3198 15 8 3.3678 1.8497 3.2587 16 7 1.3412 2.2975 2.4675 17 6 0.8898 2.7026 3.7288 18 6 1.4700 2.1789 4.8768 19 6 1.0255 2.5843 6.1198 20 6 -0.0033 3.5029 6.2222 21 6 -0.5865 4.0222 5.0813 22 6 -0.1425 3.6250 3.8349 23 6 -0.7792 4.1911 2.5918 24 9 -1.7876 5.0912 2.9527 25 9 0.1899 4.8561 1.8330 26 9 -1.3309 3.1514 1.8356 27 1 -0.5399 0.9353 0.0004 28 1 -0.5399 -0.9353 -0.0004 29 1 1.8501 -0.9354 -0.0004 30 1 1.3586 2.1316 0.0897 31 1 2.6213 1.4026 -0.9313 32 1 4.7142 0.4275 1.9198 33 1 4.3667 0.0350 0.2189 34 1 8.3323 2.5206 -0.2347 35 1 0.7513 2.3552 1.6997 36 1 2.2701 1.4579 4.7975 37 1 1.4790 2.1805 7.0130 38 1 -0.3516 3.8155 7.1955 39 1 -1.3899 4.7390 5.1646 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291654128.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:22:24 Heat of formation + Delta-G solvation = -132.596000 kcal Electronic energy + Delta-G solvation = -28877.569439 eV Core-core repulsion = 24370.869518 eV Total energy + Delta-G solvation = -4506.699922 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.114 amu Computer time = 3.29 seconds Orbital eigenvalues (eV) -51.31373 -48.80669 -48.77174 -42.00757 -40.00659 -37.50261 -36.16378 -34.97911 -33.89796 -32.94199 -31.20721 -29.72851 -27.24041 -26.92903 -25.08509 -23.71589 -22.95042 -21.56289 -20.55199 -20.07201 -19.62017 -19.44265 -19.10126 -18.94724 -18.35056 -16.97622 -16.79944 -16.14322 -16.06551 -15.87243 -15.74030 -15.63132 -15.49875 -15.20367 -15.04206 -14.99201 -14.90945 -14.78457 -14.55376 -14.46488 -14.05948 -13.72333 -13.71476 -13.24772 -12.88689 -12.76697 -12.46745 -12.41414 -12.27059 -11.98878 -11.78481 -11.67571 -11.14702 -10.81939 -10.43316 -10.22463 -9.69497 -9.16777 -8.33575 -6.39708 -0.10294 0.27237 1.14409 1.33739 1.38239 1.48365 1.51859 1.59069 1.98481 2.31963 2.56298 2.62469 2.82221 2.89456 3.01327 3.30754 3.76521 3.81967 3.96527 4.04773 4.23668 4.33481 4.39845 4.40660 4.59056 4.68967 4.79849 4.86905 4.99926 5.03610 5.21025 5.33547 5.40063 5.43786 5.49992 5.62347 5.65386 5.81544 5.87774 6.23195 6.61641 6.73914 7.20524 7.37957 8.83632 Molecular weight = 328.11amu Principal moments of inertia in cm(-1) A = 0.014421 B = 0.004187 C = 0.003822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1941.196456 B = 6685.657105 C = 7323.559737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.185 4.185 3 C 0.130 3.870 4 N -0.602 5.602 5 C 0.242 3.758 6 C -0.540 4.540 7 H 0.025 0.975 8 C 0.013 3.987 9 N -0.946 5.946 10 Si 0.950 3.050 11 H -0.251 1.251 12 H -0.283 1.283 13 H -0.251 1.251 14 C 0.701 3.299 15 O -0.600 6.600 16 N -0.681 5.681 17 C 0.205 3.795 18 C -0.161 4.161 19 C -0.060 4.060 20 C -0.136 4.136 21 C -0.048 4.048 22 C -0.240 4.240 23 C 0.510 3.490 24 F -0.166 7.166 25 F -0.187 7.187 26 F -0.178 7.178 27 H 0.103 0.897 28 H 0.123 0.877 29 H 0.116 0.884 30 H 0.076 0.924 31 H 0.094 0.906 32 H 0.029 0.971 33 H 0.056 0.944 34 H 0.269 0.731 35 H 0.410 0.590 36 H 0.132 0.868 37 H 0.159 0.841 38 H 0.174 0.826 39 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.243 -2.640 8.545 23.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.204 4.204 3 C 0.008 3.992 4 N -0.334 5.334 5 C 0.120 3.880 6 C -0.578 4.578 7 H 0.043 0.957 8 C -0.185 4.185 9 N -0.586 5.586 10 Si 0.772 3.228 11 H -0.175 1.175 12 H -0.208 1.208 13 H -0.175 1.175 14 C 0.403 3.597 15 O -0.479 6.479 16 N -0.330 5.330 17 C 0.107 3.893 18 C -0.182 4.182 19 C -0.078 4.078 20 C -0.155 4.155 21 C -0.066 4.066 22 C -0.245 4.245 23 C 0.456 3.544 24 F -0.147 7.147 25 F -0.169 7.169 26 F -0.160 7.160 27 H 0.121 0.879 28 H 0.141 0.859 29 H 0.134 0.866 30 H 0.094 0.906 31 H 0.112 0.888 32 H 0.047 0.953 33 H 0.074 0.926 34 H 0.078 0.922 35 H 0.250 0.750 36 H 0.149 0.851 37 H 0.176 0.824 38 H 0.191 0.809 39 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -21.452 -2.628 8.988 23.407 hybrid contribution 0.693 -0.028 -1.093 1.295 sum -20.759 -2.656 7.894 22.368 Atomic orbital electron populations 1.24068 0.94836 1.03372 0.97798 1.23268 0.96725 0.98097 1.02335 1.20802 0.91852 0.96278 0.90303 1.47220 1.14074 1.63050 1.09088 1.19336 0.77626 0.93862 0.97189 1.21548 0.94249 0.96015 1.46019 0.95676 1.25850 0.96910 1.01989 0.93789 1.70063 1.05995 1.34648 1.47865 0.85687 0.77866 0.79071 0.80188 1.17516 1.20841 1.17507 1.15964 0.81370 0.78464 0.83943 1.90830 1.53992 1.62679 1.40435 1.42930 1.13727 1.66339 1.09982 1.17523 0.93556 0.92996 0.85214 1.21527 1.02152 1.02838 0.91693 1.21647 0.94546 0.94783 0.96846 1.21521 0.96544 0.97729 0.99685 1.21181 0.98678 0.97433 0.89354 1.19754 1.04917 1.05319 0.94467 1.18268 0.76275 0.75916 0.83911 1.93164 1.61454 1.68624 1.91498 1.93246 1.63627 1.81684 1.78312 1.93174 1.86179 1.58228 1.78391 0.87898 0.85939 0.86617 0.90608 0.88812 0.95319 0.92631 0.92242 0.75044 0.85080 0.82361 0.80872 0.81597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.24 14.32 67.78 0.97 -2.27 16 2 C -0.19 -4.71 9.85 25.64 0.25 -4.45 16 3 C 0.13 4.18 5.67 85.63 0.49 4.66 16 4 N -0.60 -25.23 2.44 -848.56 -2.07 -27.30 16 5 C 0.24 11.71 4.23 85.63 0.36 12.07 16 6 C -0.54 -31.86 9.94 25.60 0.25 -31.61 16 7 H 0.02 1.68 8.06 -2.91 -0.02 1.65 16 8 C 0.01 0.75 5.47 84.65 0.46 1.21 16 9 N -0.95 -60.00 13.96 21.45 0.30 -59.70 16 10 Si 0.95 43.82 27.47 68.60 1.88 45.71 16 11 H -0.25 -10.59 7.11 99.48 0.71 -9.88 16 12 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 13 H -0.25 -11.03 6.54 99.48 0.65 -10.38 16 14 C 0.70 30.15 8.08 179.06 1.45 31.60 16 15 O -0.60 -30.14 13.09 -4.00 -0.05 -30.19 16 16 N -0.68 -23.45 4.78 -317.18 -1.52 -24.96 16 17 C 0.20 6.40 6.33 38.14 0.24 6.64 16 18 C -0.16 -4.92 8.72 22.39 0.20 -4.72 16 19 C -0.06 -1.25 10.04 22.25 0.22 -1.03 16 20 C -0.14 -2.19 10.04 22.29 0.22 -1.96 16 21 C -0.05 -0.89 9.43 22.25 0.21 -0.68 16 22 C -0.24 -6.07 5.38 -19.74 -0.11 -6.18 16 23 C 0.51 12.59 2.82 71.24 0.20 12.79 16 24 F -0.17 -3.52 15.98 44.97 0.72 -2.80 16 25 F -0.19 -5.54 16.74 44.97 0.75 -4.78 16 26 F -0.18 -4.14 15.88 44.97 0.71 -3.43 16 27 H 0.10 1.88 7.84 -2.91 -0.02 1.86 16 28 H 0.12 1.92 8.06 -2.91 -0.02 1.90 16 29 H 0.12 2.92 8.06 -2.91 -0.02 2.89 16 30 H 0.08 2.19 5.92 -2.39 -0.01 2.18 16 31 H 0.09 3.12 8.07 -2.39 -0.02 3.10 16 32 H 0.03 1.48 6.48 -2.39 -0.02 1.47 16 33 H 0.06 2.40 7.50 -2.38 -0.02 2.39 16 34 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16 35 H 0.41 12.37 4.31 -92.71 -0.40 11.97 16 36 H 0.13 4.79 5.79 -2.91 -0.02 4.77 16 37 H 0.16 2.41 8.06 -2.91 -0.02 2.39 16 38 H 0.17 1.38 8.06 -2.91 -0.02 1.36 16 39 H 0.17 2.10 7.15 -2.91 -0.02 2.08 16 Total: -1.00 -75.69 343.06 6.80 -68.89 By element: Atomic # 1 Polarization: 21.88 SS G_CDS: 0.65 Total: 22.53 kcal Atomic # 6 Polarization: 10.63 SS G_CDS: 5.42 Total: 16.05 kcal Atomic # 7 Polarization: -108.68 SS G_CDS: -3.29 Total: -111.97 kcal Atomic # 8 Polarization: -30.14 SS G_CDS: -0.05 Total: -30.19 kcal Atomic # 9 Polarization: -13.20 SS G_CDS: 2.19 Total: -11.01 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 1.88 Total: 45.71 kcal Total: -75.69 6.80 -68.89 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291654128.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.710 kcal (2) G-P(sol) polarization free energy of solvation -75.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.29 seconds