Wall clock time and date at job start Tue Mar 31 2020 15:22:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30991 * 1 3 3 C 1.50702 * 120.00026 * 2 1 4 4 N 1.46508 * 109.46952 * 125.00364 * 3 2 1 5 5 C 1.46502 * 119.99384 * 269.99612 * 4 3 2 6 6 C 1.50693 * 109.47354 * 269.99947 * 5 4 3 7 7 H 1.07998 * 120.00056 * 0.02562 * 6 5 4 8 8 C 1.37882 * 119.99901 * 180.02562 * 6 5 4 9 9 N 1.31510 * 119.99861 * 359.97438 * 8 6 5 10 10 Si 1.86804 * 119.99930 * 180.02562 * 8 6 5 11 11 H 1.48505 * 109.46951 * 59.99867 * 10 8 6 12 12 H 1.48490 * 109.47326 * 179.97438 * 10 8 6 13 13 H 1.48500 * 109.46987 * 300.00122 * 10 8 6 14 14 C 1.34771 * 120.00387 * 89.99855 * 4 3 2 15 15 O 1.21583 * 120.00195 * 179.97438 * 14 4 3 16 16 N 1.34782 * 120.00056 * 0.02562 * 14 4 3 17 17 C 1.39938 * 120.00034 * 184.59360 * 16 14 4 18 18 C 1.38892 * 120.07220 * 144.90968 * 17 16 14 19 19 C 1.38088 * 119.93547 * 179.97438 * 18 17 16 20 20 C 1.38305 * 120.06464 * 0.27875 * 19 18 17 21 21 C 1.38256 * 120.14277 * 359.44566 * 20 19 18 22 22 C 1.50705 * 119.96918 * 180.28022 * 21 20 19 23 23 F 1.39898 * 109.46588 * 270.27415 * 22 21 20 24 24 F 1.39902 * 109.46634 * 30.27122 * 22 21 20 25 25 F 1.39892 * 109.47352 * 150.27374 * 22 21 20 26 26 C 1.38138 * 120.07057 * 0.55227 * 21 20 19 27 27 H 1.08005 * 120.00022 * 179.97438 * 1 2 3 28 28 H 1.08000 * 119.99886 * 0.02562 * 1 2 3 29 29 H 1.08008 * 120.00068 * 180.02562 * 2 1 3 30 30 H 1.08989 * 109.47254 * 5.00358 * 3 2 1 31 31 H 1.08998 * 109.47111 * 244.99532 * 3 2 1 32 32 H 1.09001 * 109.46974 * 30.00778 * 5 4 3 33 33 H 1.09010 * 109.46575 * 150.00142 * 5 4 3 34 34 H 0.97004 * 119.99354 * 180.02562 * 9 8 6 35 35 H 0.96998 * 119.99362 * 4.58700 * 16 14 4 36 36 H 1.08008 * 120.03008 * 0.02562 * 18 17 16 37 37 H 1.07994 * 119.96799 * 179.97438 * 19 18 17 38 38 H 1.07998 * 119.92893 * 179.72705 * 20 19 18 39 39 H 1.07995 * 120.04293 * 179.74797 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9938 1.3318 1.1314 5 6 2.5588 1.8649 2.4249 6 6 2.8442 3.3435 2.4804 7 1 3.3033 3.8370 1.6366 8 6 2.5193 4.0664 3.6087 9 7 1.9598 3.4656 4.6361 10 14 2.8725 5.8995 3.6773 11 1 2.1357 6.5867 2.5863 12 1 2.4317 6.4398 4.9883 13 1 4.3302 6.1293 3.5115 14 6 4.2497 0.8661 0.9824 15 8 5.0218 0.8887 1.9213 16 7 4.6500 0.3762 -0.2077 17 6 5.9208 -0.1952 -0.3374 18 6 6.1137 -1.2781 -1.1855 19 6 7.3690 -1.8395 -1.3118 20 6 8.4324 -1.3280 -0.5904 21 6 8.2450 -0.2465 0.2503 22 6 9.4078 0.3116 1.0296 23 9 9.4984 -0.3412 2.2636 24 9 10.5904 0.1129 0.3090 25 9 9.2142 1.6811 1.2396 26 6 6.9917 0.3195 0.3810 27 1 -0.5400 -0.9354 -0.0004 28 1 -0.5400 0.9353 -0.0004 29 1 1.8500 -0.9354 -0.0004 30 1 1.3586 2.1316 0.0896 31 1 2.6213 1.4026 -0.9313 32 1 1.4887 1.6965 2.5459 33 1 3.0990 1.3602 3.2260 34 1 1.7309 3.9744 5.4296 35 1 4.0571 0.4196 -0.9741 36 1 5.2827 -1.6803 -1.7462 37 1 7.5195 -2.6817 -1.9707 38 1 9.4123 -1.7715 -0.6875 39 1 6.8449 1.1617 1.0409 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292905700.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:22:29 Heat of formation + Delta-G solvation = -119.561584 kcal Electronic energy + Delta-G solvation = -27891.094322 eV Core-core repulsion = 23384.959615 eV Total energy + Delta-G solvation = -4506.134707 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.114 amu Computer time = 2.06 seconds Orbital eigenvalues (eV) -50.06120 -47.59394 -47.49742 -40.49600 -38.76678 -35.93988 -34.71083 -33.20799 -32.19251 -31.85228 -29.74397 -27.46124 -26.06069 -25.60317 -23.60146 -22.44156 -21.73895 -20.19244 -19.47019 -18.74402 -18.38602 -18.21203 -17.40807 -16.61979 -16.31184 -16.24477 -15.30151 -15.08958 -14.82736 -14.51403 -14.42635 -14.26281 -14.00649 -13.87488 -13.84245 -13.67417 -13.60254 -13.53021 -12.91143 -12.77991 -12.63685 -12.26150 -11.99495 -11.78118 -11.41916 -11.34705 -11.15919 -10.94990 -10.61601 -10.34310 -10.19595 -9.73520 -9.44374 -9.30467 -9.17903 -8.45469 -8.23276 -7.74656 -6.06731 -4.11870 0.88433 1.24545 2.31525 2.71403 3.06336 3.30883 3.35289 3.36030 3.39742 3.76226 3.82457 4.11110 4.31586 4.46529 4.51501 4.77854 4.94649 5.01137 5.08090 5.27158 5.28314 5.33432 5.34600 5.44588 5.71964 5.88882 6.03937 6.09524 6.16252 6.23882 6.40435 6.64252 6.70148 6.84028 6.96924 7.28602 7.42086 7.56503 7.89864 8.18666 8.43459 8.87450 9.09709 9.53462 11.01178 Molecular weight = 328.11amu Principal moments of inertia in cm(-1) A = 0.010780 B = 0.004110 C = 0.003149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2596.848738 B = 6810.369198 C = 8889.501599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.173 4.173 3 C 0.136 3.864 4 N -0.600 5.600 5 C 0.262 3.738 6 C -0.530 4.530 7 H 0.057 0.943 8 C 0.063 3.937 9 N -0.893 5.893 10 Si 0.898 3.102 11 H -0.277 1.277 12 H -0.286 1.286 13 H -0.276 1.276 14 C 0.697 3.303 15 O -0.564 6.564 16 N -0.696 5.696 17 C 0.181 3.819 18 C -0.126 4.126 19 C -0.102 4.102 20 C -0.100 4.100 21 C -0.164 4.164 22 C 0.509 3.491 23 F -0.175 7.175 24 F -0.181 7.181 25 F -0.173 7.173 26 C -0.074 4.074 27 H 0.095 0.905 28 H 0.100 0.900 29 H 0.104 0.896 30 H 0.093 0.907 31 H 0.067 0.933 32 H 0.035 0.965 33 H 0.045 0.955 34 H 0.264 0.736 35 H 0.405 0.595 36 H 0.132 0.868 37 H 0.135 0.865 38 H 0.132 0.868 39 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.820 -10.877 -15.206 19.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.193 4.193 3 C 0.012 3.988 4 N -0.333 5.333 5 C 0.143 3.857 6 C -0.569 4.569 7 H 0.075 0.925 8 C -0.139 4.139 9 N -0.532 5.532 10 Si 0.725 3.275 11 H -0.203 1.203 12 H -0.212 1.212 13 H -0.201 1.201 14 C 0.399 3.601 15 O -0.440 6.440 16 N -0.346 5.346 17 C 0.084 3.916 18 C -0.147 4.147 19 C -0.121 4.121 20 C -0.120 4.120 21 C -0.167 4.167 22 C 0.455 3.545 23 F -0.157 7.157 24 F -0.163 7.163 25 F -0.155 7.155 26 C -0.095 4.095 27 H 0.113 0.887 28 H 0.118 0.882 29 H 0.122 0.878 30 H 0.111 0.889 31 H 0.085 0.915 32 H 0.053 0.947 33 H 0.063 0.937 34 H 0.074 0.926 35 H 0.242 0.758 36 H 0.150 0.850 37 H 0.152 0.848 38 H 0.150 0.850 39 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 7.214 -10.727 -14.200 19.203 hybrid contribution -0.064 1.086 -0.097 1.092 sum 7.150 -9.641 -14.298 18.668 Atomic orbital electron populations 1.23839 0.95809 1.01892 0.99911 1.23423 0.96517 0.98863 1.00475 1.20552 0.93218 0.95843 0.89152 1.47613 1.08626 1.62739 1.14344 1.19268 0.95332 0.93640 0.77493 1.21390 1.40877 0.93288 1.01324 0.92493 1.24912 0.94968 0.98756 0.95271 1.69919 1.41798 1.36311 1.05176 0.86566 0.78896 0.84844 0.77162 1.20279 1.21154 1.20127 1.15966 0.83400 0.78679 0.82038 1.90911 1.52597 1.61210 1.39271 1.42998 1.15283 1.63731 1.12550 1.17389 0.84404 0.92647 0.97184 1.21106 0.98347 0.94368 1.00868 1.20824 0.91675 1.00021 0.99569 1.20813 1.00100 0.95212 0.95830 1.19825 0.93303 1.01101 1.02423 1.18276 0.82299 0.76030 0.77878 1.93231 1.96467 1.81095 1.44873 1.93161 1.50390 1.94855 1.77878 1.93220 1.94999 1.32143 1.95089 1.21273 0.89203 1.00187 0.98833 0.88685 0.88167 0.87775 0.88866 0.91538 0.94658 0.93654 0.92605 0.75798 0.85028 0.84764 0.85015 0.82365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.10 14.32 29.02 0.42 -1.68 16 2 C -0.17 -2.25 9.85 -36.02 -0.35 -2.60 16 3 C 0.14 2.03 5.65 -5.19 -0.03 2.00 16 4 N -0.60 -12.09 2.44 -182.18 -0.44 -12.54 16 5 C 0.26 6.65 5.16 -5.20 -0.03 6.62 16 6 C -0.53 -14.67 9.39 -34.44 -0.32 -15.00 16 7 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 8 C 0.06 1.78 5.46 -17.82 -0.10 1.69 16 9 N -0.89 -26.22 13.29 55.43 0.74 -25.49 16 10 Si 0.90 21.70 29.54 -169.99 -5.02 16.68 16 11 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 12 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 13 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 14 C 0.70 14.11 8.12 -86.92 -0.71 13.40 16 15 O -0.56 -13.89 13.36 5.29 0.07 -13.82 16 16 N -0.70 -10.37 5.22 -14.22 -0.07 -10.45 16 17 C 0.18 2.58 6.30 -83.69 -0.53 2.06 16 18 C -0.13 -1.33 9.97 -39.39 -0.39 -1.72 16 19 C -0.10 -0.96 10.04 -39.61 -0.40 -1.36 16 20 C -0.10 -1.10 9.40 -39.55 -0.37 -1.47 16 21 C -0.16 -2.31 5.45 -104.65 -0.57 -2.88 16 22 C 0.51 7.32 3.36 36.01 0.12 7.44 16 23 F -0.18 -2.69 17.30 2.25 0.04 -2.65 16 24 F -0.18 -2.32 16.47 2.25 0.04 -2.28 16 25 F -0.17 -2.77 16.46 2.25 0.04 -2.73 16 26 C -0.07 -1.21 8.05 -39.39 -0.32 -1.53 16 27 H 0.09 0.97 8.06 -52.48 -0.42 0.55 16 28 H 0.10 1.17 7.84 -52.49 -0.41 0.76 16 29 H 0.10 1.29 8.06 -52.48 -0.42 0.87 16 30 H 0.09 1.46 7.72 -51.93 -0.40 1.06 16 31 H 0.07 0.78 6.30 -51.93 -0.33 0.46 16 32 H 0.04 0.91 8.07 -51.93 -0.42 0.49 16 33 H 0.05 1.32 7.42 -51.92 -0.39 0.93 16 34 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 35 H 0.40 4.63 6.52 -40.82 -0.27 4.36 16 36 H 0.13 1.01 8.06 -52.48 -0.42 0.59 16 37 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 38 H 0.13 1.16 7.60 -52.49 -0.40 0.76 16 39 H 0.16 3.10 5.77 -52.49 -0.30 2.80 16 LS Contribution 351.48 15.07 5.30 5.30 Total: -1.00 -32.58 351.48 -7.05 -39.63 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: -4.15 Total: 3.38 kcal Atomic # 6 Polarization: 8.55 SS G_CDS: -3.58 Total: 4.98 kcal Atomic # 7 Polarization: -48.69 SS G_CDS: 0.22 Total: -48.47 kcal Atomic # 8 Polarization: -13.89 SS G_CDS: 0.07 Total: -13.82 kcal Atomic # 9 Polarization: -7.78 SS G_CDS: 0.11 Total: -7.67 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -32.58 -7.05 -39.63 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292905700.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.933 kcal (2) G-P(sol) polarization free energy of solvation -32.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.06 seconds