Wall clock time and date at job start Tue Mar 31 2020 15:22:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30991 * 1 3 3 C 1.50702 * 120.00026 * 2 1 4 4 N 1.46508 * 109.46952 * 125.00364 * 3 2 1 5 5 C 1.46502 * 119.99384 * 269.99612 * 4 3 2 6 6 C 1.50693 * 109.47354 * 269.99947 * 5 4 3 7 7 H 1.07998 * 120.00056 * 0.02562 * 6 5 4 8 8 C 1.37882 * 119.99901 * 180.02562 * 6 5 4 9 9 N 1.31510 * 119.99861 * 359.97438 * 8 6 5 10 10 Si 1.86804 * 119.99930 * 180.02562 * 8 6 5 11 11 H 1.48505 * 109.46951 * 59.99867 * 10 8 6 12 12 H 1.48490 * 109.47326 * 179.97438 * 10 8 6 13 13 H 1.48500 * 109.46987 * 300.00122 * 10 8 6 14 14 C 1.34771 * 120.00387 * 89.99855 * 4 3 2 15 15 O 1.21583 * 120.00195 * 179.97438 * 14 4 3 16 16 N 1.34782 * 120.00056 * 0.02562 * 14 4 3 17 17 C 1.39938 * 120.00034 * 184.59360 * 16 14 4 18 18 C 1.38892 * 120.07220 * 144.90968 * 17 16 14 19 19 C 1.38088 * 119.93547 * 179.97438 * 18 17 16 20 20 C 1.38305 * 120.06464 * 0.27875 * 19 18 17 21 21 C 1.38256 * 120.14277 * 359.44566 * 20 19 18 22 22 C 1.50705 * 119.96918 * 180.28022 * 21 20 19 23 23 F 1.39898 * 109.46588 * 270.27415 * 22 21 20 24 24 F 1.39902 * 109.46634 * 30.27122 * 22 21 20 25 25 F 1.39892 * 109.47352 * 150.27374 * 22 21 20 26 26 C 1.38138 * 120.07057 * 0.55227 * 21 20 19 27 27 H 1.08005 * 120.00022 * 179.97438 * 1 2 3 28 28 H 1.08000 * 119.99886 * 0.02562 * 1 2 3 29 29 H 1.08008 * 120.00068 * 180.02562 * 2 1 3 30 30 H 1.08989 * 109.47254 * 5.00358 * 3 2 1 31 31 H 1.08998 * 109.47111 * 244.99532 * 3 2 1 32 32 H 1.09001 * 109.46974 * 30.00778 * 5 4 3 33 33 H 1.09010 * 109.46575 * 150.00142 * 5 4 3 34 34 H 0.97004 * 119.99354 * 180.02562 * 9 8 6 35 35 H 0.96998 * 119.99362 * 4.58700 * 16 14 4 36 36 H 1.08008 * 120.03008 * 0.02562 * 18 17 16 37 37 H 1.07994 * 119.96799 * 179.97438 * 19 18 17 38 38 H 1.07998 * 119.92893 * 179.72705 * 20 19 18 39 39 H 1.07995 * 120.04293 * 179.74797 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9938 1.3318 1.1314 5 6 2.5588 1.8649 2.4249 6 6 2.8442 3.3435 2.4804 7 1 3.3033 3.8370 1.6366 8 6 2.5193 4.0664 3.6087 9 7 1.9598 3.4656 4.6361 10 14 2.8725 5.8995 3.6773 11 1 2.1357 6.5867 2.5863 12 1 2.4317 6.4398 4.9883 13 1 4.3302 6.1293 3.5115 14 6 4.2497 0.8661 0.9824 15 8 5.0218 0.8887 1.9213 16 7 4.6500 0.3762 -0.2077 17 6 5.9208 -0.1952 -0.3374 18 6 6.1137 -1.2781 -1.1855 19 6 7.3690 -1.8395 -1.3118 20 6 8.4324 -1.3280 -0.5904 21 6 8.2450 -0.2465 0.2503 22 6 9.4078 0.3116 1.0296 23 9 9.4984 -0.3412 2.2636 24 9 10.5904 0.1129 0.3090 25 9 9.2142 1.6811 1.2396 26 6 6.9917 0.3195 0.3810 27 1 -0.5400 -0.9354 -0.0004 28 1 -0.5400 0.9353 -0.0004 29 1 1.8500 -0.9354 -0.0004 30 1 1.3586 2.1316 0.0896 31 1 2.6213 1.4026 -0.9313 32 1 1.4887 1.6965 2.5459 33 1 3.0990 1.3602 3.2260 34 1 1.7309 3.9744 5.4296 35 1 4.0571 0.4196 -0.9741 36 1 5.2827 -1.6803 -1.7462 37 1 7.5195 -2.6817 -1.9707 38 1 9.4123 -1.7715 -0.6875 39 1 6.8449 1.1617 1.0409 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292905700.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:22:27 Heat of formation + Delta-G solvation = -138.804767 kcal Electronic energy + Delta-G solvation = -27891.928769 eV Core-core repulsion = 23384.959615 eV Total energy + Delta-G solvation = -4506.969154 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.114 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -51.22867 -48.74696 -48.69909 -41.81710 -39.95353 -37.37418 -36.07889 -34.99116 -33.74258 -32.82475 -30.99106 -29.22504 -27.14265 -26.97201 -25.29985 -23.66852 -22.91578 -21.43115 -20.71951 -19.91893 -19.56013 -19.39107 -18.86579 -18.53423 -17.66681 -17.23871 -16.70854 -16.58890 -16.07003 -15.97355 -15.61749 -15.58015 -15.22867 -15.15366 -14.95746 -14.93594 -14.86548 -14.63180 -14.38457 -14.14043 -13.87975 -13.66219 -13.34113 -13.14131 -12.94182 -12.77042 -12.58783 -12.41483 -12.27198 -12.20857 -11.72483 -11.54424 -11.00441 -10.64424 -10.34271 -10.16641 -9.66501 -9.13756 -8.22282 -6.36760 -0.07418 0.25650 1.24594 1.35813 1.40122 1.47080 1.59658 1.79622 2.08653 2.37493 2.58646 2.67806 2.94529 3.06123 3.09329 3.37150 3.92333 4.00203 4.07344 4.15153 4.19417 4.31790 4.35773 4.47378 4.73700 4.79941 4.92336 5.05012 5.12888 5.19323 5.25740 5.29297 5.42433 5.49446 5.69662 5.73391 5.89532 5.90692 6.03432 6.05441 6.71681 6.99199 7.30023 7.57836 8.84160 Molecular weight = 328.11amu Principal moments of inertia in cm(-1) A = 0.010780 B = 0.004110 C = 0.003149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2596.848738 B = 6810.369198 C = 8889.501599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.186 4.186 3 C 0.133 3.867 4 N -0.606 5.606 5 C 0.281 3.719 6 C -0.543 4.543 7 H 0.052 0.948 8 C 0.011 3.989 9 N -0.926 5.926 10 Si 0.963 3.037 11 H -0.259 1.259 12 H -0.278 1.278 13 H -0.282 1.282 14 C 0.693 3.307 15 O -0.619 6.619 16 N -0.674 5.674 17 C 0.152 3.848 18 C -0.104 4.104 19 C -0.085 4.085 20 C -0.091 4.091 21 C -0.179 4.179 22 C 0.507 3.493 23 F -0.185 7.185 24 F -0.169 7.169 25 F -0.190 7.190 26 C -0.107 4.107 27 H 0.117 0.883 28 H 0.099 0.901 29 H 0.114 0.886 30 H 0.083 0.917 31 H 0.101 0.899 32 H 0.028 0.972 33 H -0.003 1.003 34 H 0.267 0.733 35 H 0.423 0.577 36 H 0.172 0.828 37 H 0.184 0.816 38 H 0.159 0.841 39 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.738 -12.569 -18.549 23.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.205 4.205 3 C 0.011 3.989 4 N -0.339 5.339 5 C 0.160 3.840 6 C -0.582 4.582 7 H 0.070 0.930 8 C -0.188 4.188 9 N -0.566 5.566 10 Si 0.788 3.212 11 H -0.183 1.183 12 H -0.203 1.203 13 H -0.208 1.208 14 C 0.395 3.605 15 O -0.499 6.499 16 N -0.325 5.325 17 C 0.057 3.943 18 C -0.124 4.124 19 C -0.103 4.103 20 C -0.110 4.110 21 C -0.181 4.181 22 C 0.453 3.547 23 F -0.167 7.167 24 F -0.151 7.151 25 F -0.171 7.171 26 C -0.128 4.128 27 H 0.135 0.865 28 H 0.118 0.882 29 H 0.132 0.868 30 H 0.101 0.899 31 H 0.119 0.881 32 H 0.046 0.954 33 H 0.015 0.985 34 H 0.076 0.924 35 H 0.264 0.736 36 H 0.189 0.811 37 H 0.202 0.798 38 H 0.177 0.823 39 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 7.118 -12.442 -17.636 22.727 hybrid contribution 0.019 1.508 0.878 1.745 sum 7.137 -10.935 -16.758 21.245 Atomic orbital electron populations 1.24064 0.95531 1.02952 0.97733 1.23298 0.96829 0.98025 1.02352 1.20814 0.92762 0.96915 0.88442 1.47417 1.09735 1.62676 1.14054 1.18632 0.93906 0.92358 0.79109 1.21678 1.40634 0.94516 1.01369 0.92955 1.25786 0.94678 1.03467 0.94866 1.70037 1.42712 1.38087 1.05733 0.85538 0.78299 0.79418 0.77972 1.18298 1.20308 1.20780 1.16151 0.82807 0.78554 0.82979 1.90883 1.54071 1.63265 1.41690 1.42566 1.15937 1.62892 1.11106 1.17673 0.83199 0.94535 0.98934 1.21538 1.00253 0.91959 0.98693 1.21416 0.90174 1.00192 0.98562 1.21258 1.02139 0.93410 0.94163 1.19845 0.91983 1.02560 1.03729 1.18453 0.83143 0.75315 0.77790 1.93204 1.96578 1.81160 1.45708 1.93173 1.49759 1.94708 1.77431 1.93182 1.95169 1.33550 1.95212 1.20993 0.91393 1.00341 1.00070 0.86508 0.88249 0.86777 0.89866 0.88134 0.95418 0.98471 0.92408 0.73638 0.81070 0.79830 0.82311 0.87137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.59 14.32 67.79 0.97 -2.62 16 2 C -0.19 -4.52 9.85 25.66 0.25 -4.27 16 3 C 0.13 3.88 5.65 85.63 0.48 4.36 16 4 N -0.61 -25.28 2.44 -848.56 -2.07 -27.35 16 5 C 0.28 15.12 5.16 85.63 0.44 15.56 16 6 C -0.54 -31.31 9.39 25.60 0.24 -31.07 16 7 H 0.05 2.99 7.81 -2.91 -0.02 2.97 16 8 C 0.01 0.66 5.46 84.66 0.46 1.12 16 9 N -0.93 -56.18 13.29 21.45 0.28 -55.89 16 10 Si 0.96 45.38 29.54 68.60 2.03 47.41 16 11 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 12 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 13 H -0.28 -13.49 7.11 99.48 0.71 -12.78 16 14 C 0.69 29.24 8.12 179.05 1.45 30.70 16 15 O -0.62 -32.91 13.36 -3.98 -0.05 -32.96 16 16 N -0.67 -19.79 5.22 -317.18 -1.65 -21.45 16 17 C 0.15 4.22 6.30 38.15 0.24 4.46 16 18 C -0.10 -1.76 9.97 22.39 0.22 -1.53 16 19 C -0.09 -1.16 10.04 22.25 0.22 -0.94 16 20 C -0.09 -1.70 9.40 22.29 0.21 -1.50 16 21 C -0.18 -5.01 5.45 -19.88 -0.11 -5.11 16 22 C 0.51 15.02 3.36 71.24 0.24 15.26 16 23 F -0.19 -5.92 17.30 44.97 0.78 -5.14 16 24 F -0.17 -4.21 16.47 44.97 0.74 -3.47 16 25 F -0.19 -6.53 16.46 44.97 0.74 -5.79 16 26 C -0.11 -3.64 8.05 22.39 0.18 -3.46 16 27 H 0.12 2.05 8.06 -2.91 -0.02 2.02 16 28 H 0.10 2.17 7.84 -2.91 -0.02 2.15 16 29 H 0.11 2.57 8.06 -2.91 -0.02 2.55 16 30 H 0.08 2.59 7.72 -2.39 -0.02 2.57 16 31 H 0.10 2.18 6.30 -2.39 -0.02 2.17 16 32 H 0.03 1.51 8.07 -2.39 -0.02 1.49 16 33 H 0.00 -0.18 7.42 -2.38 -0.02 -0.20 16 34 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 35 H 0.42 8.79 6.52 -92.71 -0.60 8.19 16 36 H 0.17 1.57 8.06 -2.91 -0.02 1.54 16 37 H 0.18 0.83 8.06 -2.91 -0.02 0.81 16 38 H 0.16 2.11 7.60 -2.91 -0.02 2.09 16 39 H 0.11 4.82 5.77 -2.91 -0.02 4.81 16 Total: -1.00 -78.21 351.48 6.80 -71.41 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: 0.50 Total: 12.27 kcal Atomic # 6 Polarization: 15.45 SS G_CDS: 5.51 Total: 20.97 kcal Atomic # 7 Polarization: -101.25 SS G_CDS: -3.44 Total: -104.69 kcal Atomic # 8 Polarization: -32.91 SS G_CDS: -0.05 Total: -32.96 kcal Atomic # 9 Polarization: -16.66 SS G_CDS: 2.26 Total: -14.41 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.41 kcal Total: -78.21 6.80 -71.41 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292905700.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.394 kcal (2) G-P(sol) polarization free energy of solvation -78.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds