Wall clock time and date at job start Tue Mar 31 2020 15:22:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50697 * 120.00110 * 2 1 4 4 N 1.46495 * 109.47315 * 125.00134 * 3 2 1 5 5 C 1.46496 * 120.00021 * 269.99896 * 4 3 2 6 6 C 1.50703 * 109.47417 * 270.00343 * 5 4 3 7 7 H 1.07996 * 119.99824 * 359.97438 * 6 5 4 8 8 C 1.37880 * 120.00019 * 180.02562 * 6 5 4 9 9 N 1.31516 * 119.99595 * 179.97438 * 8 6 5 10 10 Si 1.86802 * 120.00043 * 359.97438 * 8 6 5 11 11 H 1.48498 * 109.47153 * 90.00379 * 10 8 6 12 12 H 1.48495 * 109.46886 * 210.00232 * 10 8 6 13 13 H 1.48499 * 109.47279 * 330.00026 * 10 8 6 14 14 C 1.34775 * 120.00194 * 90.00269 * 4 3 2 15 15 O 1.21281 * 120.00218 * 179.97438 * 14 4 3 16 16 C 1.50698 * 119.99939 * 359.97438 * 14 4 3 17 17 N 1.46497 * 109.47184 * 180.02562 * 16 14 4 18 18 C 1.34527 * 124.46173 * 269.97803 * 17 16 14 19 19 O 1.21445 * 125.70798 * 0.03494 * 18 17 16 20 20 C 1.47815 * 108.57968 * 180.02562 * 18 17 16 21 21 C 1.38565 * 134.29113 * 180.02562 * 20 18 17 22 22 C 1.38612 * 119.71975 * 179.97438 * 21 20 18 23 23 C 1.38234 * 120.45518 * 0.02900 * 22 21 20 24 24 C 1.38604 * 120.46148 * 359.95875 * 23 22 21 25 25 C 1.38570 * 119.72412 * 0.02562 * 24 23 22 26 26 C 1.34527 * 124.46351 * 89.99810 * 17 16 14 27 27 O 1.21449 * 125.70270 * 0.02562 * 26 17 16 28 28 H 1.08003 * 119.99509 * 180.02562 * 1 2 3 29 29 H 1.07997 * 120.00205 * 359.97438 * 1 2 3 30 30 H 1.08006 * 120.00045 * 180.02562 * 2 1 3 31 31 H 1.09000 * 109.46905 * 4.99578 * 3 2 1 32 32 H 1.09000 * 109.47103 * 245.00245 * 3 2 1 33 33 H 1.09007 * 109.47223 * 30.00079 * 5 4 3 34 34 H 1.08994 * 109.47433 * 150.00055 * 5 4 3 35 35 H 0.96999 * 119.99503 * 179.97438 * 9 8 6 36 36 H 1.09004 * 109.47107 * 60.00430 * 16 14 4 37 37 H 1.08999 * 109.47371 * 300.00258 * 16 14 4 38 38 H 1.08008 * 120.14186 * 359.68328 * 21 20 18 39 39 H 1.08000 * 119.77048 * 179.97438 * 22 21 20 40 40 H 1.08002 * 119.76600 * 179.97438 * 23 22 21 41 41 H 1.07996 * 120.14014 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3319 1.1314 5 6 2.5589 1.8649 2.4247 6 6 2.8442 3.3437 2.4803 7 1 3.3039 3.8369 1.6367 8 6 2.5193 4.0666 3.6085 9 7 2.7688 5.3569 3.6571 10 14 1.7249 3.2132 5.0680 11 1 2.7809 2.7221 5.9893 12 1 0.8489 4.1734 5.7861 13 1 0.9132 2.0657 4.5888 14 6 4.2497 0.8662 0.9823 15 8 5.0200 0.8888 1.9188 16 6 4.6969 0.3174 -0.3480 17 7 6.0912 -0.1217 -0.2514 18 6 7.1552 0.6616 -0.5047 19 8 7.1128 1.8269 -0.8440 20 6 8.3845 -0.1335 -0.3008 21 6 9.7395 0.1347 -0.4100 22 6 10.6617 -0.8641 -0.1391 23 6 10.2386 -2.1248 0.2382 24 6 8.8865 -2.4075 0.3518 25 6 7.9530 -1.4188 0.0845 26 6 6.4762 -1.3613 0.1020 27 8 5.7343 -2.2797 0.3867 28 1 -0.5399 -0.9354 0.0004 29 1 -0.5400 0.9353 0.0004 30 1 1.8500 -0.9354 -0.0004 31 1 1.3585 2.1316 0.0895 32 1 2.6212 1.4026 -0.9314 33 1 1.4887 1.6966 2.5459 34 1 3.0990 1.3604 3.2258 35 1 2.5399 5.8655 4.4507 36 1 4.6120 1.0938 -1.1084 37 1 4.0678 -0.5296 -0.6217 38 1 10.0757 1.1165 -0.7094 39 1 11.7181 -0.6561 -0.2243 40 1 10.9668 -2.8948 0.4462 41 1 8.5617 -3.3941 0.6474 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293921760.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:22:10 Heat of formation + Delta-G solvation = -12.612570 kcal Electronic energy + Delta-G solvation = -27526.121074 eV Core-core repulsion = 23566.480764 eV Total energy + Delta-G solvation = -3959.640310 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.40539 -39.38271 -38.61692 -38.44240 -36.00437 -35.63853 -33.26941 -32.49289 -32.10770 -31.41209 -29.26787 -27.48924 -25.60521 -25.21651 -23.76494 -22.34330 -22.16673 -20.27527 -19.96740 -18.72299 -17.93823 -17.42477 -17.15817 -16.90728 -16.56330 -15.82206 -15.46649 -15.44327 -14.91138 -14.73289 -14.51723 -14.44100 -14.27842 -13.96045 -13.90834 -13.31036 -13.09186 -12.82567 -12.62309 -12.39912 -12.15163 -11.96772 -11.82346 -11.64212 -11.18481 -10.97284 -10.67077 -10.53947 -10.36953 -10.29143 -10.16224 -9.57902 -9.51820 -9.49901 -9.31821 -9.01599 -8.59013 -7.85432 -6.08619 -4.07847 -0.10262 0.69811 1.88135 2.13516 2.34378 2.90921 3.11562 3.29336 3.34183 3.35314 3.37559 3.50009 3.79209 4.17972 4.34879 4.39537 4.55911 4.76466 4.78587 4.92634 4.93478 5.07254 5.14073 5.17800 5.24121 5.30351 5.33402 5.48303 5.52647 5.67324 5.80655 5.87917 5.90915 6.07579 6.28891 6.59467 6.63596 6.68567 6.80278 6.90584 7.16198 7.24604 7.58488 7.60656 8.08198 8.44585 8.76865 8.95331 9.50916 11.04636 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.013503 B = 0.003675 C = 0.003271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2073.175953 B = 7617.634313 C = 8557.052190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.174 4.174 3 C 0.132 3.868 4 N -0.582 5.582 5 C 0.219 3.781 6 C -0.531 4.531 7 H 0.076 0.924 8 C 0.074 3.926 9 N -0.895 5.895 10 Si 0.874 3.126 11 H -0.274 1.274 12 H -0.284 1.284 13 H -0.265 1.265 14 C 0.496 3.504 15 O -0.528 6.528 16 C 0.091 3.909 17 N -0.558 5.558 18 C 0.577 3.423 19 O -0.452 6.452 20 C -0.130 4.130 21 C -0.046 4.046 22 C -0.098 4.098 23 C -0.099 4.099 24 C -0.047 4.047 25 C -0.134 4.134 26 C 0.581 3.419 27 O -0.464 6.464 28 H 0.096 0.904 29 H 0.101 0.899 30 H 0.107 0.893 31 H 0.095 0.905 32 H 0.078 0.922 33 H 0.033 0.967 34 H 0.036 0.964 35 H 0.265 0.735 36 H 0.124 0.876 37 H 0.121 0.879 38 H 0.143 0.857 39 H 0.141 0.859 40 H 0.141 0.859 41 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.452 -16.532 -12.530 23.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.194 4.194 3 C 0.009 3.991 4 N -0.314 5.314 5 C 0.098 3.902 6 C -0.569 4.569 7 H 0.094 0.906 8 C -0.129 4.129 9 N -0.534 5.534 10 Si 0.701 3.299 11 H -0.199 1.199 12 H -0.210 1.210 13 H -0.190 1.190 14 C 0.281 3.719 15 O -0.404 6.404 16 C -0.033 4.033 17 N -0.300 5.300 18 C 0.366 3.634 19 O -0.322 6.322 20 C -0.134 4.134 21 C -0.065 4.065 22 C -0.116 4.116 23 C -0.118 4.118 24 C -0.065 4.065 25 C -0.137 4.137 26 C 0.370 3.630 27 O -0.335 6.335 28 H 0.114 0.886 29 H 0.119 0.881 30 H 0.125 0.875 31 H 0.113 0.887 32 H 0.096 0.904 33 H 0.051 0.949 34 H 0.054 0.946 35 H 0.075 0.925 36 H 0.141 0.859 37 H 0.139 0.861 38 H 0.161 0.839 39 H 0.159 0.841 40 H 0.159 0.841 41 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 10.321 -16.154 -11.927 22.577 hybrid contribution -0.613 -0.185 0.925 1.125 sum 9.707 -16.339 -11.001 21.960 Atomic orbital electron populations 1.23857 0.95789 1.01944 0.99956 1.23445 0.96560 0.98928 1.00437 1.20694 0.93314 0.95811 0.89329 1.47853 1.10190 1.59941 1.13378 1.19694 0.95021 0.95227 0.80229 1.21318 1.41322 0.91002 1.03258 0.90617 1.24839 0.95247 0.94720 0.98066 1.69899 1.47629 1.06593 1.29256 0.86875 0.79897 0.79704 0.83397 1.19929 1.20979 1.18995 1.20367 0.82853 0.79162 0.89523 1.90705 1.52374 1.55910 1.41402 1.21711 0.79823 1.02905 0.98872 1.46020 1.08044 1.13006 1.62882 1.18307 0.83978 0.85530 0.75632 1.90835 1.86536 1.13850 1.41022 1.20569 0.94481 0.94713 1.03633 1.20823 0.89805 1.00278 0.95598 1.21449 1.00169 0.92630 0.97323 1.21435 0.95190 0.97362 0.97770 1.20785 0.91601 0.98665 0.95496 1.20555 0.93536 0.95697 1.03947 1.18283 0.88285 0.81570 0.74880 1.90788 1.60633 1.39324 1.42747 0.88606 0.88113 0.87530 0.88670 0.90439 0.94896 0.94588 0.92535 0.85851 0.86109 0.83931 0.84108 0.84150 0.84070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.13 14.32 29.02 0.42 -1.72 16 2 C -0.17 -2.33 9.74 -36.03 -0.35 -2.68 16 3 C 0.13 2.06 5.65 -5.20 -0.03 2.03 16 4 N -0.58 -12.16 2.44 -176.44 -0.43 -12.59 16 5 C 0.22 5.46 4.23 -5.19 -0.02 5.43 16 6 C -0.53 -15.49 9.94 -34.44 -0.34 -15.84 16 7 H 0.08 2.43 8.06 -52.49 -0.42 2.00 16 8 C 0.07 2.19 5.47 -17.82 -0.10 2.09 16 9 N -0.90 -28.00 13.96 55.43 0.77 -27.23 16 10 Si 0.87 21.96 27.47 -169.99 -4.67 17.29 16 11 H -0.27 -6.95 7.11 56.52 0.40 -6.55 16 12 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 13 H -0.27 -6.28 6.54 56.52 0.37 -5.91 16 14 C 0.50 10.53 7.74 -10.99 -0.09 10.45 16 15 O -0.53 -13.61 16.01 5.56 0.09 -13.52 16 16 C 0.09 1.43 4.78 -5.20 -0.02 1.41 16 17 N -0.56 -9.09 2.11 -118.91 -0.25 -9.34 16 18 C 0.58 9.43 8.02 -12.46 -0.10 9.33 16 19 O -0.45 -8.53 17.68 5.41 0.10 -8.44 16 20 C -0.13 -1.69 6.40 -104.83 -0.67 -2.36 16 21 C -0.05 -0.44 10.09 -39.32 -0.40 -0.84 16 22 C -0.10 -0.65 10.04 -39.45 -0.40 -1.04 16 23 C -0.10 -0.65 10.04 -39.45 -0.40 -1.04 16 24 C -0.05 -0.42 10.09 -39.32 -0.40 -0.82 16 25 C -0.13 -1.69 6.41 -104.84 -0.67 -2.36 16 26 C 0.58 9.05 8.02 -12.46 -0.10 8.95 16 27 O -0.46 -7.98 17.68 5.41 0.10 -7.89 16 28 H 0.10 0.99 8.06 -52.48 -0.42 0.57 16 29 H 0.10 1.18 7.84 -52.49 -0.41 0.77 16 30 H 0.11 1.35 7.83 -52.48 -0.41 0.94 16 31 H 0.09 1.54 7.72 -51.93 -0.40 1.14 16 32 H 0.08 0.98 6.44 -51.93 -0.33 0.64 16 33 H 0.03 0.78 7.13 -51.92 -0.37 0.41 16 34 H 0.04 0.97 6.85 -51.93 -0.36 0.62 16 35 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 36 H 0.12 1.69 7.23 -51.93 -0.38 1.32 16 37 H 0.12 1.55 7.59 -51.93 -0.39 1.16 16 38 H 0.14 1.14 8.06 -52.48 -0.42 0.72 16 39 H 0.14 0.49 8.06 -52.49 -0.42 0.07 16 40 H 0.14 0.46 8.06 -52.49 -0.42 0.04 16 41 H 0.14 1.03 8.06 -52.49 -0.42 0.61 16 LS Contribution 364.35 15.07 5.49 5.49 Total: -1.00 -38.64 364.35 -7.23 -45.87 By element: Atomic # 1 Polarization: 4.12 SS G_CDS: -4.76 Total: -0.64 kcal Atomic # 6 Polarization: 14.66 SS G_CDS: -3.66 Total: 10.99 kcal Atomic # 7 Polarization: -49.25 SS G_CDS: 0.09 Total: -49.16 kcal Atomic # 8 Polarization: -30.12 SS G_CDS: 0.28 Total: -29.84 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.67 Total: 17.29 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -38.64 -7.23 -45.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293921760.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.253 kcal (2) G-P(sol) polarization free energy of solvation -38.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds