Wall clock time and date at job start Tue Mar 31 2020 15:22:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50697 * 120.00110 * 2 1 4 4 N 1.46495 * 109.47315 * 125.00134 * 3 2 1 5 5 C 1.46496 * 120.00021 * 269.99896 * 4 3 2 6 6 C 1.50703 * 109.47417 * 270.00343 * 5 4 3 7 7 H 1.07996 * 119.99824 * 359.97438 * 6 5 4 8 8 C 1.37880 * 120.00019 * 180.02562 * 6 5 4 9 9 N 1.31516 * 119.99595 * 179.97438 * 8 6 5 10 10 Si 1.86802 * 120.00043 * 359.97438 * 8 6 5 11 11 H 1.48498 * 109.47153 * 90.00379 * 10 8 6 12 12 H 1.48495 * 109.46886 * 210.00232 * 10 8 6 13 13 H 1.48499 * 109.47279 * 330.00026 * 10 8 6 14 14 C 1.34775 * 120.00194 * 90.00269 * 4 3 2 15 15 O 1.21281 * 120.00218 * 179.97438 * 14 4 3 16 16 C 1.50698 * 119.99939 * 359.97438 * 14 4 3 17 17 N 1.46497 * 109.47184 * 180.02562 * 16 14 4 18 18 C 1.34527 * 124.46173 * 269.97803 * 17 16 14 19 19 O 1.21445 * 125.70798 * 0.03494 * 18 17 16 20 20 C 1.47815 * 108.57968 * 180.02562 * 18 17 16 21 21 C 1.38565 * 134.29113 * 180.02562 * 20 18 17 22 22 C 1.38612 * 119.71975 * 179.97438 * 21 20 18 23 23 C 1.38234 * 120.45518 * 0.02900 * 22 21 20 24 24 C 1.38604 * 120.46148 * 359.95875 * 23 22 21 25 25 C 1.38570 * 119.72412 * 0.02562 * 24 23 22 26 26 C 1.34527 * 124.46351 * 89.99810 * 17 16 14 27 27 O 1.21449 * 125.70270 * 0.02562 * 26 17 16 28 28 H 1.08003 * 119.99509 * 180.02562 * 1 2 3 29 29 H 1.07997 * 120.00205 * 359.97438 * 1 2 3 30 30 H 1.08006 * 120.00045 * 180.02562 * 2 1 3 31 31 H 1.09000 * 109.46905 * 4.99578 * 3 2 1 32 32 H 1.09000 * 109.47103 * 245.00245 * 3 2 1 33 33 H 1.09007 * 109.47223 * 30.00079 * 5 4 3 34 34 H 1.08994 * 109.47433 * 150.00055 * 5 4 3 35 35 H 0.96999 * 119.99503 * 179.97438 * 9 8 6 36 36 H 1.09004 * 109.47107 * 60.00430 * 16 14 4 37 37 H 1.08999 * 109.47371 * 300.00258 * 16 14 4 38 38 H 1.08008 * 120.14186 * 359.68328 * 21 20 18 39 39 H 1.08000 * 119.77048 * 179.97438 * 22 21 20 40 40 H 1.08002 * 119.76600 * 179.97438 * 23 22 21 41 41 H 1.07996 * 120.14014 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3319 1.1314 5 6 2.5589 1.8649 2.4247 6 6 2.8442 3.3437 2.4803 7 1 3.3039 3.8369 1.6367 8 6 2.5193 4.0666 3.6085 9 7 2.7688 5.3569 3.6571 10 14 1.7249 3.2132 5.0680 11 1 2.7809 2.7221 5.9893 12 1 0.8489 4.1734 5.7861 13 1 0.9132 2.0657 4.5888 14 6 4.2497 0.8662 0.9823 15 8 5.0200 0.8888 1.9188 16 6 4.6969 0.3174 -0.3480 17 7 6.0912 -0.1217 -0.2514 18 6 7.1552 0.6616 -0.5047 19 8 7.1128 1.8269 -0.8440 20 6 8.3845 -0.1335 -0.3008 21 6 9.7395 0.1347 -0.4100 22 6 10.6617 -0.8641 -0.1391 23 6 10.2386 -2.1248 0.2382 24 6 8.8865 -2.4075 0.3518 25 6 7.9530 -1.4188 0.0845 26 6 6.4762 -1.3613 0.1020 27 8 5.7343 -2.2797 0.3867 28 1 -0.5399 -0.9354 0.0004 29 1 -0.5400 0.9353 0.0004 30 1 1.8500 -0.9354 -0.0004 31 1 1.3585 2.1316 0.0895 32 1 2.6212 1.4026 -0.9314 33 1 1.4887 1.6966 2.5459 34 1 3.0990 1.3604 3.2258 35 1 2.5399 5.8655 4.4507 36 1 4.6120 1.0938 -1.1084 37 1 4.0678 -0.5296 -0.6217 38 1 10.0757 1.1165 -0.7094 39 1 11.7181 -0.6561 -0.2243 40 1 10.9668 -2.8948 0.4462 41 1 8.5617 -3.3941 0.6474 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293921760.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:22:08 Heat of formation + Delta-G solvation = -39.461593 kcal Electronic energy + Delta-G solvation = -27527.285335 eV Core-core repulsion = 23566.480764 eV Total energy + Delta-G solvation = -3960.804571 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 2.17 seconds Orbital eigenvalues (eV) -43.51763 -40.90722 -39.86989 -39.38207 -37.48659 -36.96934 -35.15005 -33.85195 -33.47189 -32.12936 -30.89512 -28.96200 -27.00873 -26.26897 -25.09070 -23.74632 -23.27494 -21.47257 -21.03574 -20.20176 -19.17329 -18.87603 -18.70709 -18.49002 -17.67983 -17.18345 -16.83615 -16.60795 -16.40472 -16.00565 -15.68942 -15.53448 -15.43473 -15.24699 -15.05373 -14.84812 -14.56411 -14.26861 -13.73072 -13.69850 -13.53808 -13.25186 -13.16073 -12.95063 -12.73782 -12.56514 -12.31581 -11.99940 -11.81540 -11.76646 -11.64986 -11.54139 -10.88715 -10.71553 -10.37857 -10.22285 -10.19259 -9.61881 -8.39075 -6.45043 -1.04734 -0.01931 0.95510 0.97083 1.26654 1.30269 1.31908 1.40684 1.48171 1.72532 2.25768 2.28975 2.52665 2.64525 2.94619 3.14370 3.38090 3.58880 3.75993 3.86752 4.02200 4.05276 4.10124 4.18129 4.18344 4.25578 4.36565 4.47389 4.67864 4.78503 4.82780 4.84026 4.92884 5.03258 5.21236 5.26079 5.36920 5.40154 5.43374 5.68896 5.70839 5.85819 5.99799 6.15517 6.35705 6.47906 6.56352 7.06001 7.21337 8.78016 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.013503 B = 0.003675 C = 0.003271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2073.175953 B = 7617.634313 C = 8557.052190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.189 4.189 3 C 0.126 3.874 4 N -0.588 5.588 5 C 0.230 3.770 6 C -0.539 4.539 7 H 0.028 0.972 8 C 0.014 3.986 9 N -0.942 5.942 10 Si 0.947 3.053 11 H -0.278 1.278 12 H -0.270 1.270 13 H -0.238 1.238 14 C 0.486 3.514 15 O -0.586 6.586 16 C 0.098 3.902 17 N -0.568 5.568 18 C 0.569 3.431 19 O -0.497 6.497 20 C -0.160 4.160 21 C -0.048 4.048 22 C -0.080 4.080 23 C -0.079 4.079 24 C -0.043 4.043 25 C -0.158 4.158 26 C 0.575 3.425 27 O -0.490 6.490 28 H 0.119 0.881 29 H 0.103 0.897 30 H 0.115 0.885 31 H 0.086 0.914 32 H 0.105 0.895 33 H 0.053 0.947 34 H 0.015 0.985 35 H 0.270 0.730 36 H 0.141 0.859 37 H 0.153 0.847 38 H 0.152 0.848 39 H 0.185 0.815 40 H 0.187 0.813 41 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.507 -19.694 -12.756 26.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.208 4.208 3 C 0.004 3.996 4 N -0.318 5.318 5 C 0.107 3.893 6 C -0.578 4.578 7 H 0.046 0.954 8 C -0.185 4.185 9 N -0.582 5.582 10 Si 0.769 3.231 11 H -0.204 1.204 12 H -0.195 1.195 13 H -0.161 1.161 14 C 0.273 3.727 15 O -0.466 6.466 16 C -0.026 4.026 17 N -0.309 5.309 18 C 0.360 3.640 19 O -0.370 6.370 20 C -0.164 4.164 21 C -0.066 4.066 22 C -0.098 4.098 23 C -0.097 4.097 24 C -0.062 4.062 25 C -0.162 4.162 26 C 0.367 3.633 27 O -0.364 6.364 28 H 0.137 0.863 29 H 0.121 0.879 30 H 0.133 0.867 31 H 0.104 0.896 32 H 0.123 0.877 33 H 0.071 0.929 34 H 0.033 0.967 35 H 0.079 0.921 36 H 0.159 0.841 37 H 0.171 0.829 38 H 0.170 0.830 39 H 0.202 0.798 40 H 0.204 0.796 41 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 11.349 -19.344 -12.213 25.537 hybrid contribution -0.814 0.816 0.924 1.478 sum 10.534 -18.528 -11.289 24.118 Atomic orbital electron populations 1.24101 0.95299 1.03190 0.97178 1.23261 0.96951 0.97735 1.02873 1.20987 0.92865 0.97186 0.88519 1.47945 1.11231 1.59125 1.13457 1.19319 0.95625 0.92176 0.82132 1.21516 1.40917 0.93313 1.02046 0.95377 1.25834 0.95834 0.95366 1.01429 1.70049 1.49126 1.08477 1.30569 0.85737 0.79092 0.79469 0.78806 1.20383 1.19464 1.16132 1.21311 0.82271 0.78293 0.90862 1.90655 1.53886 1.58339 1.43731 1.21751 0.80703 1.04424 0.95719 1.46216 1.08105 1.13616 1.62921 1.19012 0.85407 0.85243 0.74306 1.90787 1.87287 1.15526 1.43436 1.20482 0.94641 0.94294 1.06946 1.21197 0.88746 1.01805 0.94897 1.21986 1.01587 0.91611 0.94580 1.22004 0.94566 0.98281 0.94843 1.21208 0.92245 0.98513 0.94184 1.20498 0.91857 0.96855 1.06959 1.18844 0.89863 0.80823 0.73783 1.90747 1.61644 1.39839 1.44137 0.86261 0.87921 0.86676 0.89561 0.87743 0.92879 0.96719 0.92126 0.84099 0.82926 0.83043 0.79784 0.79559 0.82343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.44 14.32 67.78 0.97 -2.47 16 2 C -0.19 -4.75 9.74 25.65 0.25 -4.50 16 3 C 0.13 3.91 5.65 85.63 0.48 4.40 16 4 N -0.59 -25.28 2.44 -830.53 -2.03 -27.30 16 5 C 0.23 11.74 4.23 85.63 0.36 12.10 16 6 C -0.54 -33.01 9.94 25.60 0.25 -32.76 16 7 H 0.03 1.92 8.06 -2.91 -0.02 1.90 16 8 C 0.01 0.84 5.47 84.66 0.46 1.30 16 9 N -0.94 -61.12 13.96 21.45 0.30 -60.82 16 10 Si 0.95 45.85 27.47 68.60 1.88 47.74 16 11 H -0.28 -13.63 7.11 99.48 0.71 -12.92 16 12 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 13 H -0.24 -10.41 6.54 99.48 0.65 -9.76 16 14 C 0.49 21.58 7.74 87.66 0.68 22.26 16 15 O -0.59 -32.09 16.01 -3.03 -0.05 -32.14 16 16 C 0.10 3.19 4.78 85.63 0.41 3.60 16 17 N -0.57 -19.43 2.11 -767.04 -1.62 -21.05 16 18 C 0.57 19.79 8.02 86.82 0.70 20.48 16 19 O -0.50 -20.20 17.68 -3.54 -0.06 -20.26 16 20 C -0.16 -4.20 6.40 -20.00 -0.13 -4.32 16 21 C -0.05 -0.83 10.09 22.44 0.23 -0.60 16 22 C -0.08 -0.71 10.04 22.36 0.22 -0.48 16 23 C -0.08 -0.64 10.04 22.36 0.22 -0.42 16 24 C -0.04 -0.66 10.09 22.44 0.23 -0.44 16 25 C -0.16 -3.95 6.41 -20.00 -0.13 -4.08 16 26 C 0.58 18.52 8.02 86.81 0.70 19.21 16 27 O -0.49 -17.26 17.68 -3.55 -0.06 -17.32 16 28 H 0.12 2.04 8.06 -2.91 -0.02 2.02 16 29 H 0.10 2.17 7.84 -2.91 -0.02 2.15 16 30 H 0.12 2.72 7.83 -2.91 -0.02 2.69 16 31 H 0.09 2.81 7.72 -2.39 -0.02 2.79 16 32 H 0.10 2.61 6.44 -2.39 -0.02 2.59 16 33 H 0.05 2.49 7.13 -2.38 -0.02 2.47 16 34 H 0.01 0.82 6.85 -2.39 -0.02 0.80 16 35 H 0.27 16.18 8.31 -92.71 -0.77 15.41 16 36 H 0.14 4.01 7.23 -2.38 -0.02 4.00 16 37 H 0.15 3.90 7.59 -2.39 -0.02 3.88 16 38 H 0.15 2.26 8.06 -2.91 -0.02 2.24 16 39 H 0.18 0.12 8.06 -2.91 -0.02 0.09 16 40 H 0.19 -0.09 8.06 -2.91 -0.02 -0.12 16 41 H 0.16 1.84 8.06 -2.91 -0.02 1.82 16 Total: -1.00 -92.72 364.35 5.28 -87.44 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: 1.01 Total: 10.42 kcal Atomic # 6 Polarization: 27.39 SS G_CDS: 5.91 Total: 33.30 kcal Atomic # 7 Polarization: -105.83 SS G_CDS: -3.35 Total: -109.17 kcal Atomic # 8 Polarization: -69.54 SS G_CDS: -0.17 Total: -69.72 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 1.88 Total: 47.74 kcal Total: -92.72 5.28 -87.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293921760.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.978 kcal (2) G-P(sol) polarization free energy of solvation -92.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.17 seconds