Wall clock time and date at job start Tue Mar 31 2020 16:03:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09000 * 109.46687 * 2 1 4 4 N 1.46498 * 109.47062 * 239.99640 * 2 1 3 5 5 C 1.39787 * 119.99655 * 85.00503 * 4 2 1 6 6 C 1.38949 * 120.00768 * 359.72369 * 5 4 2 7 7 C 1.38014 * 119.99165 * 179.72684 * 6 5 4 8 8 C 1.38902 * 120.00431 * 0.54395 * 7 6 5 9 9 O 1.35797 * 119.99290 * 179.70354 * 8 7 6 10 10 C 1.34804 * 117.00356 * 174.48403 * 9 8 7 11 11 H 1.08008 * 119.99586 * 5.05152 * 10 9 8 12 12 C 1.38613 * 120.00410 * 185.05852 * 10 9 8 13 13 N 1.31578 * 120.00061 * 359.97438 * 12 10 9 14 14 Si 1.86805 * 120.00138 * 179.97438 * 12 10 9 15 15 H 1.48502 * 109.47049 * 359.97438 * 14 12 10 16 16 H 1.48502 * 109.47075 * 120.00065 * 14 12 10 17 17 H 1.48499 * 109.47052 * 239.99899 * 14 12 10 18 18 C 1.38893 * 120.01185 * 359.72800 * 8 7 6 19 19 C 1.38011 * 120.01053 * 0.02562 * 18 8 7 20 20 C 1.50697 * 109.46976 * 119.99645 * 2 1 3 21 21 C 1.38238 * 119.99962 * 80.20966 * 20 2 1 22 22 C 1.38239 * 120.00238 * 180.25822 * 21 20 2 23 23 C 1.38240 * 119.99512 * 359.51183 * 22 21 20 24 24 N 1.48015 * 119.99624 * 180.25482 * 23 22 21 25 25 O 1.21797 * 120.00466 * 0.02562 * 24 23 22 26 26 O 1.21807 * 119.99958 * 179.97438 * 24 23 22 27 27 C 1.38228 * 119.99939 * 0.27753 * 23 22 21 28 28 C 1.38234 * 120.00272 * 260.00361 * 20 2 1 29 29 H 1.08997 * 109.47279 * 300.00624 * 1 2 3 30 30 H 1.09003 * 109.46629 * 60.00334 * 1 2 3 31 31 H 1.09000 * 109.46687 * 179.97438 * 1 2 3 32 32 H 0.96994 * 120.00402 * 264.99510 * 4 2 1 33 33 H 1.07992 * 120.00331 * 359.97438 * 6 5 4 34 34 H 1.07994 * 119.99573 * 180.25287 * 7 6 5 35 35 H 0.97001 * 120.00268 * 180.02562 * 13 12 10 36 36 H 1.08003 * 119.99887 * 179.97438 * 18 8 7 37 37 H 1.07998 * 120.00529 * 179.97438 * 19 18 8 38 38 H 1.08001 * 120.00155 * 0.04285 * 21 20 2 39 39 H 1.07996 * 120.00222 * 179.78902 * 22 21 20 40 40 H 1.08006 * 119.99822 * 179.97438 * 27 23 22 41 41 H 1.07996 * 119.99864 * 359.97438 * 28 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 2.1519 0.0067 -2.4002 6 6 1.8162 1.3535 -2.4642 7 6 1.9535 2.0431 -3.6518 8 6 2.4166 1.3881 -4.7858 9 8 2.5460 2.0654 -5.9557 10 6 3.1072 1.4036 -6.9873 11 1 3.3557 0.3573 -6.8864 12 6 3.3655 2.0657 -8.1773 13 7 3.0624 3.3402 -8.3003 14 14 4.1439 1.1486 -9.6066 15 1 4.3863 -0.2633 -9.2155 16 1 3.2305 1.1889 -10.7768 17 1 5.4341 1.7915 -9.9633 18 6 2.7470 0.0405 -4.7234 19 6 2.6147 -0.6484 -3.5349 20 6 2.0324 -0.7103 1.2305 21 6 2.0708 -2.0918 1.2638 22 6 2.5265 -2.7435 2.3945 23 6 2.9533 -2.0136 3.4882 24 7 3.4466 -2.7113 4.6968 25 8 3.4769 -3.9285 4.7276 26 8 3.8231 -2.0682 5.6603 27 6 2.9189 -0.6322 3.4532 28 6 2.4587 0.0195 2.3243 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 2.2491 -1.6318 -1.1525 33 1 1.4516 1.8615 -1.5838 34 1 1.6964 3.0908 -3.7006 35 1 3.2428 3.8034 -9.1332 36 1 3.1066 -0.4687 -5.6054 37 1 2.8712 -1.6964 -3.4866 38 1 1.7415 -2.6620 0.4078 39 1 2.5534 -3.8228 2.4218 40 1 3.2520 -0.0619 4.3078 41 1 2.4321 1.0988 2.2969 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000314543326.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:03:14 Heat of formation + Delta-G solvation = 29.269232 kcal Electronic energy + Delta-G solvation = -25829.652140 eV Core-core repulsion = 21871.827961 eV Total energy + Delta-G solvation = -3957.824178 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.49706 -40.37682 -39.09210 -37.43796 -36.87767 -35.49286 -32.61136 -32.03781 -31.80843 -30.59684 -29.85265 -27.32712 -26.70116 -25.20658 -23.92155 -23.38196 -22.39043 -21.42316 -20.49143 -19.75293 -18.96863 -18.01608 -17.83900 -17.35589 -17.04120 -16.18294 -15.78616 -15.22029 -14.89684 -14.53733 -14.43049 -14.26041 -14.01462 -13.75465 -13.63257 -13.23734 -13.12617 -12.74622 -12.54213 -12.31809 -12.06908 -11.87937 -11.77877 -11.62059 -11.50563 -11.45336 -11.39244 -11.29194 -11.03912 -10.62302 -10.41327 -9.89807 -9.89120 -9.37318 -9.30235 -8.56601 -8.28961 -6.56135 -6.39880 -3.97373 -0.56207 0.45777 0.95010 1.05800 2.08743 2.43626 2.77128 3.13030 3.14795 3.19874 3.49791 3.88658 3.94801 3.99692 4.01554 4.41430 4.45157 4.56367 4.74266 4.88663 4.98547 5.12785 5.14281 5.21636 5.25240 5.30830 5.40647 5.49957 5.55498 5.65445 5.71283 5.77249 5.95251 6.08211 6.10642 6.12759 6.39633 6.74087 6.77400 7.00567 7.23348 7.30527 7.32314 7.51298 7.78181 8.01921 8.04389 9.06192 9.78994 10.78756 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.027726 B = 0.001957 C = 0.001900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.633258 B =14301.790759 C =14733.595164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.189 3.811 3 H 0.093 0.907 4 N -0.754 5.754 5 C 0.119 3.881 6 C -0.144 4.144 7 C -0.152 4.152 8 C 0.116 3.884 9 O -0.186 6.186 10 C -0.388 4.388 11 H 0.089 0.911 12 C 0.036 3.964 13 N -0.867 5.867 14 Si 0.938 3.062 15 H -0.268 1.268 16 H -0.277 1.277 17 H -0.277 1.277 18 C -0.191 4.191 19 C -0.137 4.137 20 C -0.027 4.027 21 C -0.112 4.112 22 C -0.050 4.050 23 C -0.051 4.051 24 N 0.030 4.970 25 O -0.163 6.163 26 O -0.163 6.163 27 C -0.050 4.050 28 C -0.110 4.110 29 H 0.061 0.939 30 H 0.074 0.926 31 H 0.059 0.941 32 H 0.390 0.610 33 H 0.111 0.889 34 H 0.118 0.882 35 H 0.267 0.733 36 H 0.128 0.872 37 H 0.106 0.894 38 H 0.147 0.853 39 H 0.154 0.846 40 H 0.155 0.845 41 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.372 -8.778 20.432 22.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.083 3.917 3 H 0.111 0.889 4 N -0.391 5.391 5 C 0.022 3.978 6 C -0.166 4.166 7 C -0.171 4.171 8 C 0.064 3.936 9 O -0.091 6.091 10 C -0.464 4.464 11 H 0.107 0.893 12 C -0.167 4.167 13 N -0.503 5.503 14 Si 0.763 3.237 15 H -0.192 1.192 16 H -0.203 1.203 17 H -0.203 1.203 18 C -0.211 4.211 19 C -0.159 4.159 20 C -0.028 4.028 21 C -0.131 4.131 22 C -0.069 4.069 23 C -0.134 4.134 24 N 0.549 4.451 25 O -0.378 6.378 26 O -0.378 6.378 27 C -0.069 4.069 28 C -0.129 4.129 29 H 0.080 0.920 30 H 0.093 0.907 31 H 0.078 0.922 32 H 0.225 0.775 33 H 0.129 0.871 34 H 0.136 0.864 35 H 0.077 0.923 36 H 0.146 0.854 37 H 0.124 0.876 38 H 0.165 0.835 39 H 0.171 0.829 40 H 0.172 0.828 41 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -3.710 -7.884 19.679 21.521 hybrid contribution 0.657 -1.128 -0.366 1.356 sum -3.053 -9.012 19.313 21.529 Atomic orbital electron populations 1.22334 0.94516 1.02799 1.02858 1.19698 0.93958 0.96423 0.81632 0.88913 1.44265 1.77040 1.11436 1.06397 1.17307 1.03096 0.91777 0.85620 1.20181 1.06494 0.92580 0.97319 1.20034 1.06614 0.99712 0.90782 1.19263 0.95928 0.90767 0.87677 1.83986 1.70425 1.39061 1.15624 1.21282 1.39938 0.95036 0.90187 0.89344 1.25232 0.97420 0.95874 0.98164 1.70052 1.45076 1.08668 1.26514 0.85690 0.78707 0.79025 0.80230 1.19244 1.20262 1.20259 1.21003 1.07222 0.94725 0.98121 1.20222 1.05075 0.98648 0.91942 1.20655 0.92419 0.94071 0.95675 1.21031 1.00171 0.94079 0.97795 1.21061 0.93487 1.01918 0.90435 1.21140 1.11311 0.93201 0.87770 1.43643 0.98152 1.01157 1.02184 1.94544 1.59029 0.95709 1.88542 1.94543 1.49599 1.67180 1.26496 1.21066 0.94892 0.91311 0.99664 1.21122 0.98804 1.01340 0.91595 0.91994 0.90696 0.92200 0.77495 0.87069 0.86439 0.92262 0.85418 0.87622 0.83534 0.82858 0.82786 0.83160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.30 9.40 37.16 0.35 -0.95 16 2 C 0.19 1.58 2.47 -69.08 -0.17 1.41 16 3 H 0.09 0.79 6.36 -51.93 -0.33 0.46 16 4 N -0.75 -8.10 5.20 -53.24 -0.28 -8.38 16 5 C 0.12 1.79 6.64 -83.70 -0.56 1.23 16 6 C -0.14 -2.30 8.83 -39.40 -0.35 -2.65 16 7 C -0.15 -3.01 9.98 -39.42 -0.39 -3.40 16 8 C 0.12 2.71 6.65 -39.09 -0.26 2.45 16 9 O -0.19 -5.23 9.75 -0.02 0.00 -5.23 16 10 C -0.39 -10.71 9.48 30.87 0.29 -10.42 16 11 H 0.09 2.26 5.20 -52.48 -0.27 1.99 16 12 C 0.04 1.00 5.49 -17.52 -0.10 0.90 16 13 N -0.87 -25.38 13.67 55.48 0.76 -24.62 16 14 Si 0.94 20.45 29.55 -169.99 -5.02 15.43 16 15 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 16 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 17 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 18 C -0.19 -3.95 9.16 -39.42 -0.36 -4.31 16 19 C -0.14 -2.31 9.89 -39.40 -0.39 -2.70 16 20 C -0.03 -0.19 4.96 -104.62 -0.52 -0.71 16 21 C -0.11 -0.74 9.06 -39.58 -0.36 -1.10 16 22 C -0.05 -0.37 9.56 -39.58 -0.38 -0.75 16 23 C -0.05 -0.45 6.85 -79.95 -0.55 -1.00 16 24 N 0.03 0.33 4.45 33.96 0.15 0.48 16 25 O -0.16 -1.95 18.45 -29.46 -0.54 -2.49 16 26 O -0.16 -1.93 18.45 -29.46 -0.54 -2.48 16 27 C -0.05 -0.36 9.55 -39.59 -0.38 -0.74 16 28 C -0.11 -0.69 9.67 -39.58 -0.38 -1.07 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.07 0.71 7.67 -51.93 -0.40 0.31 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.39 3.59 6.87 -40.82 -0.28 3.31 16 33 H 0.11 1.44 6.08 -52.49 -0.32 1.12 16 34 H 0.12 2.26 8.06 -52.49 -0.42 1.83 16 35 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 36 H 0.13 2.68 5.63 -52.48 -0.30 2.39 16 37 H 0.11 1.51 8.06 -52.49 -0.42 1.08 16 38 H 0.15 0.75 6.90 -52.49 -0.36 0.39 16 39 H 0.15 0.94 7.61 -52.49 -0.40 0.54 16 40 H 0.15 0.90 7.61 -52.48 -0.40 0.50 16 41 H 0.15 0.62 8.04 -52.49 -0.42 0.20 16 LS Contribution 357.17 15.07 5.38 5.38 Total: -1.00 -32.07 357.17 -8.90 -40.96 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: -4.31 Total: 4.74 kcal Atomic # 6 Polarization: -19.30 SS G_CDS: -4.50 Total: -23.80 kcal Atomic # 7 Polarization: -33.15 SS G_CDS: 0.63 Total: -32.51 kcal Atomic # 8 Polarization: -9.11 SS G_CDS: -1.09 Total: -10.19 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -32.07 -8.90 -40.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000314543326.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.234 kcal (2) G-P(sol) polarization free energy of solvation -32.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.965 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds