Wall clock time and date at job start Tue Mar 31 2020 16:03:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09000 * 109.46687 * 2 1 4 4 N 1.46498 * 109.47062 * 239.99640 * 2 1 3 5 5 C 1.39787 * 119.99655 * 85.00503 * 4 2 1 6 6 C 1.38949 * 120.00768 * 359.72369 * 5 4 2 7 7 C 1.38014 * 119.99165 * 179.72684 * 6 5 4 8 8 C 1.38902 * 120.00431 * 0.54395 * 7 6 5 9 9 O 1.35797 * 119.99290 * 179.70354 * 8 7 6 10 10 C 1.34804 * 117.00356 * 174.48403 * 9 8 7 11 11 H 1.08008 * 119.99586 * 5.05152 * 10 9 8 12 12 C 1.38613 * 120.00410 * 185.05852 * 10 9 8 13 13 N 1.31578 * 120.00061 * 359.97438 * 12 10 9 14 14 Si 1.86805 * 120.00138 * 179.97438 * 12 10 9 15 15 H 1.48502 * 109.47049 * 359.97438 * 14 12 10 16 16 H 1.48502 * 109.47075 * 120.00065 * 14 12 10 17 17 H 1.48499 * 109.47052 * 239.99899 * 14 12 10 18 18 C 1.38893 * 120.01185 * 359.72800 * 8 7 6 19 19 C 1.38011 * 120.01053 * 0.02562 * 18 8 7 20 20 C 1.50697 * 109.46976 * 119.99645 * 2 1 3 21 21 C 1.38238 * 119.99962 * 80.20966 * 20 2 1 22 22 C 1.38239 * 120.00238 * 180.25822 * 21 20 2 23 23 C 1.38240 * 119.99512 * 359.51183 * 22 21 20 24 24 N 1.48015 * 119.99624 * 180.25482 * 23 22 21 25 25 O 1.21797 * 120.00466 * 0.02562 * 24 23 22 26 26 O 1.21807 * 119.99958 * 179.97438 * 24 23 22 27 27 C 1.38228 * 119.99939 * 0.27753 * 23 22 21 28 28 C 1.38234 * 120.00272 * 260.00361 * 20 2 1 29 29 H 1.08997 * 109.47279 * 300.00624 * 1 2 3 30 30 H 1.09003 * 109.46629 * 60.00334 * 1 2 3 31 31 H 1.09000 * 109.46687 * 179.97438 * 1 2 3 32 32 H 0.96994 * 120.00402 * 264.99510 * 4 2 1 33 33 H 1.07992 * 120.00331 * 359.97438 * 6 5 4 34 34 H 1.07994 * 119.99573 * 180.25287 * 7 6 5 35 35 H 0.97001 * 120.00268 * 180.02562 * 13 12 10 36 36 H 1.08003 * 119.99887 * 179.97438 * 18 8 7 37 37 H 1.07998 * 120.00529 * 179.97438 * 19 18 8 38 38 H 1.08001 * 120.00155 * 0.04285 * 21 20 2 39 39 H 1.07996 * 120.00222 * 179.78902 * 22 21 20 40 40 H 1.08006 * 119.99822 * 179.97438 * 27 23 22 41 41 H 1.07996 * 119.99864 * 359.97438 * 28 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 2.1519 0.0067 -2.4002 6 6 1.8162 1.3535 -2.4642 7 6 1.9535 2.0431 -3.6518 8 6 2.4166 1.3881 -4.7858 9 8 2.5460 2.0654 -5.9557 10 6 3.1072 1.4036 -6.9873 11 1 3.3557 0.3573 -6.8864 12 6 3.3655 2.0657 -8.1773 13 7 3.0624 3.3402 -8.3003 14 14 4.1439 1.1486 -9.6066 15 1 4.3863 -0.2633 -9.2155 16 1 3.2305 1.1889 -10.7768 17 1 5.4341 1.7915 -9.9633 18 6 2.7470 0.0405 -4.7234 19 6 2.6147 -0.6484 -3.5349 20 6 2.0324 -0.7103 1.2305 21 6 2.0708 -2.0918 1.2638 22 6 2.5265 -2.7435 2.3945 23 6 2.9533 -2.0136 3.4882 24 7 3.4466 -2.7113 4.6968 25 8 3.4769 -3.9285 4.7276 26 8 3.8231 -2.0682 5.6603 27 6 2.9189 -0.6322 3.4532 28 6 2.4587 0.0195 2.3243 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 2.2491 -1.6318 -1.1525 33 1 1.4516 1.8615 -1.5838 34 1 1.6964 3.0908 -3.7006 35 1 3.2428 3.8034 -9.1332 36 1 3.1066 -0.4687 -5.6054 37 1 2.8712 -1.6964 -3.4866 38 1 1.7415 -2.6620 0.4078 39 1 2.5534 -3.8228 2.4218 40 1 3.2520 -0.0619 4.3078 41 1 2.4321 1.0988 2.2969 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000314543326.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:03:13 Heat of formation + Delta-G solvation = 11.176354 kcal Electronic energy + Delta-G solvation = -25830.436706 eV Core-core repulsion = 21871.827961 eV Total energy + Delta-G solvation = -3958.608744 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -43.27807 -41.12344 -40.51166 -38.80574 -37.71423 -36.65484 -34.24172 -33.21260 -32.43589 -31.88074 -30.86194 -28.62768 -27.53827 -27.02484 -24.60091 -24.11604 -23.70072 -22.59805 -21.61445 -20.43033 -19.78911 -19.68142 -18.85640 -18.63036 -18.22063 -17.22656 -16.55124 -16.28197 -16.01655 -15.84862 -15.44199 -15.28497 -15.11200 -14.90620 -14.78084 -14.36287 -14.12322 -14.02951 -13.80461 -13.45729 -13.19276 -13.03574 -12.79679 -12.71994 -12.65436 -12.49533 -12.37496 -12.34318 -12.18240 -12.08531 -11.96479 -11.07629 -10.97618 -10.49925 -10.40748 -10.19749 -9.75356 -8.39536 -7.96251 -6.02863 -1.30221 -0.04558 0.22403 0.35573 0.60794 0.93865 1.36867 1.45287 1.54429 2.18848 2.22194 2.57737 2.91896 3.25899 3.31785 3.36088 3.49146 3.68884 3.84563 3.91703 4.12671 4.17355 4.26498 4.31535 4.33301 4.58055 4.60796 4.67080 4.69955 4.74437 4.85768 4.93325 4.95943 5.12528 5.13390 5.15696 5.29154 5.35491 5.45061 5.49220 5.56732 5.80634 5.97520 6.12320 6.42747 6.57356 6.95991 7.06845 7.94073 8.85040 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.027726 B = 0.001957 C = 0.001900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.633258 B =14301.790759 C =14733.595164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.188 3.812 3 H 0.100 0.900 4 N -0.741 5.741 5 C 0.156 3.844 6 C -0.140 4.140 7 C -0.157 4.157 8 C 0.062 3.938 9 O -0.243 6.243 10 C -0.403 4.403 11 H 0.098 0.902 12 C -0.030 4.030 13 N -0.926 5.926 14 Si 1.015 2.985 15 H -0.252 1.252 16 H -0.271 1.271 17 H -0.271 1.271 18 C -0.196 4.196 19 C -0.143 4.143 20 C -0.026 4.026 21 C -0.108 4.108 22 C -0.051 4.051 23 C -0.067 4.067 24 N 0.031 4.969 25 O -0.185 6.185 26 O -0.182 6.182 27 C -0.051 4.051 28 C -0.102 4.102 29 H 0.081 0.919 30 H 0.059 0.941 31 H 0.063 0.937 32 H 0.403 0.597 33 H 0.150 0.850 34 H 0.113 0.887 35 H 0.269 0.731 36 H 0.115 0.885 37 H 0.138 0.862 38 H 0.165 0.835 39 H 0.162 0.838 40 H 0.165 0.835 41 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.676 -10.468 22.388 24.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.082 3.918 3 H 0.118 0.882 4 N -0.377 5.377 5 C 0.056 3.944 6 C -0.161 4.161 7 C -0.176 4.176 8 C 0.013 3.987 9 O -0.151 6.151 10 C -0.479 4.479 11 H 0.116 0.884 12 C -0.226 4.226 13 N -0.566 5.566 14 Si 0.835 3.165 15 H -0.175 1.175 16 H -0.196 1.196 17 H -0.196 1.196 18 C -0.216 4.216 19 C -0.165 4.165 20 C -0.027 4.027 21 C -0.127 4.127 22 C -0.070 4.070 23 C -0.150 4.150 24 N 0.545 4.455 25 O -0.398 6.398 26 O -0.395 6.395 27 C -0.070 4.070 28 C -0.120 4.120 29 H 0.100 0.900 30 H 0.078 0.922 31 H 0.083 0.917 32 H 0.240 0.760 33 H 0.167 0.833 34 H 0.131 0.869 35 H 0.078 0.922 36 H 0.133 0.867 37 H 0.156 0.844 38 H 0.182 0.818 39 H 0.179 0.821 40 H 0.182 0.818 41 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -4.023 -9.650 21.753 24.135 hybrid contribution 0.631 -0.707 -0.567 1.104 sum -3.392 -10.357 21.186 23.825 Atomic orbital electron populations 1.22304 0.93625 1.03255 1.03131 1.19856 0.94492 0.96625 0.80807 0.88216 1.44363 1.75641 1.12045 1.05624 1.17384 0.99052 0.91414 0.86593 1.20492 1.05626 0.93035 0.96996 1.20272 1.06156 0.99940 0.91280 1.19801 0.99114 0.92274 0.87547 1.83932 1.73078 1.40798 1.17293 1.21762 1.39733 0.95651 0.90803 0.88448 1.26501 0.98088 0.96866 1.01117 1.70202 1.48016 1.10803 1.27579 0.84569 0.77636 0.78208 0.76050 1.17540 1.19575 1.19634 1.21046 1.07232 0.93960 0.99381 1.20485 1.04899 1.00105 0.91020 1.20571 0.92648 0.94203 0.95316 1.21206 0.99468 0.94084 0.97906 1.21219 0.93169 1.02479 0.90164 1.21388 1.12583 0.93955 0.87117 1.44006 0.97692 1.01065 1.02757 1.94527 1.59834 0.96436 1.88955 1.94525 1.50340 1.67054 1.27587 1.21274 0.94624 0.90678 1.00454 1.21378 0.97442 1.02586 0.90626 0.89993 0.92233 0.91747 0.76034 0.83269 0.86917 0.92195 0.86684 0.84392 0.81773 0.82068 0.81794 0.80614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.78 9.40 71.98 0.68 -1.10 16 2 C 0.19 2.15 2.47 44.25 0.11 2.26 16 3 H 0.10 1.12 6.36 -2.39 -0.02 1.10 16 4 N -0.74 -12.16 5.20 -322.34 -1.68 -13.84 16 5 C 0.16 4.10 6.64 38.21 0.25 4.35 16 6 C -0.14 -4.06 8.83 22.39 0.20 -3.86 16 7 C -0.16 -6.24 9.98 22.38 0.22 -6.02 16 8 C 0.06 3.00 6.65 22.59 0.15 3.15 16 9 O -0.24 -14.53 9.75 -23.00 -0.22 -14.75 16 10 C -0.40 -23.42 9.48 67.91 0.64 -22.78 16 11 H 0.10 5.20 5.20 -2.91 -0.02 5.18 16 12 C -0.03 -1.69 5.49 84.82 0.47 -1.22 16 13 N -0.93 -57.26 13.67 21.61 0.30 -56.97 16 14 Si 1.02 43.15 29.55 68.60 2.03 45.18 16 15 H -0.25 -9.85 7.11 99.48 0.71 -9.14 16 16 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 17 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 18 C -0.20 -8.17 9.16 22.37 0.20 -7.97 16 19 C -0.14 -4.44 9.89 22.39 0.22 -4.22 16 20 C -0.03 -0.25 4.96 -19.87 -0.10 -0.34 16 21 C -0.11 -0.96 9.06 22.27 0.20 -0.76 16 22 C -0.05 -0.60 9.56 22.27 0.21 -0.39 16 23 C -0.07 -1.03 6.85 36.37 0.25 -0.78 16 24 N 0.03 0.66 4.45 -46.47 -0.21 0.45 16 25 O -0.19 -4.33 18.45 18.89 0.35 -3.98 16 26 O -0.18 -4.21 18.45 18.88 0.35 -3.86 16 27 C -0.05 -0.57 9.55 22.27 0.21 -0.36 16 28 C -0.10 -0.82 9.67 22.27 0.22 -0.60 16 29 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.06 0.87 7.67 -2.39 -0.02 0.86 16 31 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.40 5.17 6.87 -92.71 -0.64 4.54 16 33 H 0.15 3.18 6.08 -2.91 -0.02 3.17 16 34 H 0.11 4.47 8.06 -2.91 -0.02 4.44 16 35 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 36 H 0.12 4.96 5.63 -2.91 -0.02 4.95 16 37 H 0.14 3.37 8.06 -2.91 -0.02 3.35 16 38 H 0.16 0.85 6.90 -2.91 -0.02 0.83 16 39 H 0.16 1.59 7.61 -2.91 -0.02 1.57 16 40 H 0.16 1.48 7.61 -2.91 -0.02 1.46 16 41 H 0.18 0.51 8.04 -2.91 -0.02 0.49 16 Total: -1.00 -76.17 357.17 5.51 -70.67 By element: Atomic # 1 Polarization: 17.30 SS G_CDS: 0.46 Total: 17.76 kcal Atomic # 6 Polarization: -44.79 SS G_CDS: 4.14 Total: -40.65 kcal Atomic # 7 Polarization: -68.76 SS G_CDS: -1.59 Total: -70.35 kcal Atomic # 8 Polarization: -23.07 SS G_CDS: 0.47 Total: -22.60 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.18 kcal Total: -76.17 5.51 -70.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000314543326.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.843 kcal (2) G-P(sol) polarization free energy of solvation -76.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.666 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds