Wall clock time and date at job start Tue Mar 31 2020 16:20:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 109.47300 * 2 1 4 4 N 1.46497 * 109.46953 * 239.99788 * 2 1 3 5 5 C 1.34779 * 119.99819 * 85.27893 * 4 2 1 6 6 O 1.21609 * 120.00341 * 359.72067 * 5 4 2 7 7 C 1.47387 * 119.99875 * 179.72424 * 5 4 2 8 8 C 1.47018 * 127.19226 * 179.97438 * 7 5 4 9 9 C 1.34176 * 105.95383 * 179.97438 * 8 7 5 10 10 O 1.34215 * 109.12662 * 0.02562 * 9 8 7 11 11 C 1.33659 * 110.90453 * 359.75800 * 10 9 8 12 12 C 1.50698 * 109.47585 * 119.99809 * 2 1 3 13 13 O 1.21280 * 120.00282 * 119.99624 * 12 2 1 14 14 N 1.34782 * 119.99959 * 300.00228 * 12 2 1 15 15 C 1.39237 * 120.00065 * 176.68646 * 14 12 2 16 16 C 1.39479 * 119.83341 * 217.49050 * 15 14 12 17 17 C 1.36376 * 120.17002 * 179.76385 * 16 15 14 18 18 C 1.40869 * 119.82604 * 0.50898 * 17 16 15 19 19 C 1.41149 * 120.16656 * 179.72224 * 18 17 16 20 20 H 1.07996 * 120.00572 * 158.00658 * 19 18 17 21 21 C 1.39907 * 119.99705 * 338.00844 * 19 18 17 22 22 N 1.30870 * 119.99978 * 327.57545 * 21 19 18 23 23 Si 1.86801 * 120.00004 * 147.58153 * 21 19 18 24 24 H 1.48494 * 109.47118 * 94.98542 * 23 21 19 25 25 H 1.48506 * 109.46825 * 214.98293 * 23 21 19 26 26 H 1.48494 * 109.47151 * 334.98333 * 23 21 19 27 27 C 1.40871 * 119.67493 * 359.74551 * 18 17 16 28 28 C 1.36385 * 119.82490 * 359.97438 * 27 18 17 29 29 H 1.08999 * 109.46890 * 300.00348 * 1 2 3 30 30 H 1.08998 * 109.47326 * 60.00233 * 1 2 3 31 31 H 1.08998 * 109.47333 * 180.02562 * 1 2 3 32 32 H 0.97003 * 120.00079 * 264.99517 * 4 2 1 33 33 H 1.08001 * 127.02289 * 359.97438 * 8 7 5 34 34 H 1.08003 * 125.43876 * 179.97438 * 9 8 7 35 35 H 1.08000 * 125.80255 * 180.27119 * 11 10 9 36 36 H 0.96999 * 119.99888 * 356.68901 * 14 12 2 37 37 H 1.08001 * 119.91201 * 0.02562 * 16 15 14 38 38 H 1.07994 * 120.08766 * 180.25653 * 17 16 15 39 39 H 0.97005 * 120.00281 * 180.02562 * 22 21 19 40 40 H 1.08001 * 120.09284 * 179.97438 * 27 18 17 41 41 H 1.07996 * 119.91498 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0182 -0.6906 -1.1961 5 6 2.1522 -0.0169 -2.3557 6 8 1.8630 1.1630 -2.4104 7 6 2.6493 -0.7103 -3.5576 8 6 2.8549 -0.1344 -4.8946 9 6 3.3162 -1.1351 -5.6602 10 8 3.4070 -2.2502 -4.9187 11 6 3.0192 -2.0193 -3.6607 12 6 2.0324 -0.7103 1.2304 13 8 2.7296 -1.6964 1.1192 14 7 1.7068 -0.2498 2.4546 15 6 2.1131 -0.9449 3.5906 16 6 1.2634 -1.0288 4.6936 17 6 1.6524 -1.7118 5.8080 18 6 2.9203 -2.3245 5.8473 19 6 3.3325 -3.0283 6.9993 20 1 4.1077 -3.7768 6.9263 21 6 2.7370 -2.7563 8.2357 22 7 2.3212 -1.5460 8.5096 23 14 2.5353 -4.1206 9.4956 24 1 3.6804 -4.0948 10.4407 25 1 1.2697 -3.9186 10.2457 26 1 2.4956 -5.4330 8.8020 27 6 3.7750 -2.2309 4.7314 28 6 3.3697 -1.5493 3.6219 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 2.2490 -1.6318 -1.1525 33 1 2.6721 0.8857 -5.1985 34 1 3.5727 -1.0562 -6.7064 35 1 3.0002 -2.7459 -2.8619 36 1 1.1894 0.5657 2.5442 37 1 0.2933 -0.5551 4.6634 38 1 0.9919 -1.7794 6.6597 39 1 1.9086 -1.3573 9.3670 40 1 4.7486 -2.6978 4.7544 41 1 4.0239 -1.4762 2.7657 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000338268414.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:20:32 Heat of formation + Delta-G solvation = -34.740913 kcal Electronic energy + Delta-G solvation = -26165.506108 eV Core-core repulsion = 22204.906241 eV Total energy + Delta-G solvation = -3960.599867 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 1.84 seconds Orbital eigenvalues (eV) -42.82174 -40.33789 -39.12572 -37.36604 -35.06400 -34.55033 -33.32743 -33.07521 -31.25271 -29.76356 -29.55773 -28.85663 -25.54111 -24.70201 -23.24857 -21.78101 -21.58500 -20.81058 -20.25866 -19.80748 -18.81915 -17.45533 -17.19578 -16.72777 -16.43544 -15.89124 -15.72220 -15.28716 -15.11516 -15.03177 -14.55770 -14.08270 -13.81078 -13.65556 -13.20817 -13.15865 -12.81448 -12.71052 -12.62437 -12.41796 -12.12523 -12.04383 -11.73385 -11.47123 -11.19927 -10.99792 -10.59510 -10.24205 -10.23014 -10.11434 -9.81774 -9.59986 -9.34779 -9.13848 -9.07233 -8.76844 -7.61345 -7.22415 -6.95024 -4.33456 1.06975 1.78289 2.46508 2.60210 2.81059 2.88442 3.01475 3.03920 3.07504 3.16915 3.27096 3.68660 3.84634 4.30313 4.38320 4.43779 4.73195 4.87517 4.95270 5.06173 5.20461 5.35462 5.46654 5.58774 5.61202 5.67749 5.96758 5.98649 6.12922 6.18500 6.35410 6.63159 6.68344 6.87379 6.94107 7.06934 7.21371 7.33774 7.49653 7.59977 7.79782 7.95695 8.02276 8.17755 8.19987 8.47825 8.61869 8.77944 8.92212 9.96039 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.028180 B = 0.002120 C = 0.002019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.391073 B =13202.945195 C =13865.435566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.127 3.873 3 H 0.113 0.887 4 N -0.706 5.706 5 C 0.591 3.409 6 O -0.539 6.539 7 C -0.236 4.236 8 C -0.164 4.164 9 C -0.043 4.043 10 O -0.174 6.174 11 C 0.027 3.973 12 C 0.496 3.504 13 O -0.533 6.533 14 N -0.638 5.638 15 C -0.027 4.027 16 C -0.099 4.099 17 C -0.172 4.172 18 C 0.114 3.886 19 C -0.463 4.463 20 H 0.083 0.917 21 C 0.088 3.912 22 N -0.767 5.767 23 Si 0.897 3.103 24 H -0.269 1.269 25 H -0.274 1.274 26 H -0.257 1.257 27 C -0.225 4.225 28 C -0.063 4.063 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.064 0.936 32 H 0.408 0.592 33 H 0.160 0.840 34 H 0.209 0.791 35 H 0.214 0.786 36 H 0.396 0.604 37 H 0.090 0.910 38 H 0.108 0.892 39 H 0.284 0.716 40 H 0.095 0.905 41 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.019 1.772 -19.109 19.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.019 3.981 3 H 0.130 0.870 4 N -0.360 5.360 5 C 0.379 3.621 6 O -0.417 6.417 7 C -0.240 4.240 8 C -0.184 4.184 9 C -0.109 4.109 10 O -0.069 6.069 11 C -0.044 4.044 12 C 0.281 3.719 13 O -0.410 6.410 14 N -0.281 5.281 15 C -0.119 4.119 16 C -0.119 4.119 17 C -0.192 4.192 18 C 0.111 3.889 19 C -0.491 4.491 20 H 0.101 0.899 21 C -0.135 4.135 22 N -0.390 5.390 23 Si 0.720 3.280 24 H -0.194 1.194 25 H -0.198 1.198 26 H -0.181 1.181 27 C -0.245 4.245 28 C -0.083 4.083 29 H 0.093 0.907 30 H 0.090 0.910 31 H 0.084 0.916 32 H 0.245 0.755 33 H 0.177 0.823 34 H 0.225 0.775 35 H 0.230 0.770 36 H 0.230 0.770 37 H 0.108 0.892 38 H 0.126 0.874 39 H 0.095 0.905 40 H 0.113 0.887 41 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -2.738 1.816 -19.153 19.433 hybrid contribution -0.351 -0.292 0.873 0.985 sum -3.089 1.524 -18.280 18.602 Atomic orbital electron populations 1.22118 0.92808 1.03262 1.03456 1.20757 0.95647 0.98041 0.83670 0.86953 1.45576 1.67287 1.14667 1.08444 1.17221 0.77065 0.86025 0.81799 1.90778 1.50685 1.15349 1.84901 1.21483 1.12084 0.94659 0.95819 1.22778 1.03643 1.00923 0.91048 1.23963 1.05677 0.83390 0.97837 1.83812 1.66435 1.36718 1.19923 1.24590 0.97516 0.96873 0.85374 1.20404 0.81771 0.85074 0.84661 1.90672 1.37653 1.26556 1.86165 1.42825 1.54278 1.26562 1.04438 1.17021 0.96504 1.10624 0.87762 1.20161 0.96775 1.00930 0.94002 1.20622 0.97228 1.04191 0.97123 1.17604 0.90498 0.88794 0.92023 1.19527 1.18928 1.18979 0.91654 0.89945 1.25961 0.92590 0.95427 0.99478 1.69942 1.26448 1.19627 1.22947 0.86494 0.78730 0.82848 0.79940 1.19419 1.19843 1.18059 1.20597 0.99619 1.08514 0.95786 1.20284 0.93480 0.97561 0.96977 0.90749 0.90983 0.91644 0.75503 0.82267 0.77455 0.76968 0.76966 0.89186 0.87441 0.90508 0.88721 0.88030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.68 9.39 37.15 0.35 -1.33 16 2 C 0.13 1.61 2.98 -69.09 -0.21 1.41 16 3 H 0.11 1.42 7.57 -51.93 -0.39 1.03 16 4 N -0.71 -8.62 4.94 -56.03 -0.28 -8.89 16 5 C 0.59 7.74 7.78 -12.54 -0.10 7.64 16 6 O -0.54 -8.61 16.64 5.27 0.09 -8.52 16 7 C -0.24 -2.58 6.31 -103.27 -0.65 -3.23 16 8 C -0.16 -1.55 11.01 -37.46 -0.41 -1.96 16 9 C -0.04 -0.31 12.03 29.30 0.35 0.04 16 10 O -0.17 -1.49 10.52 7.64 0.08 -1.41 16 11 C 0.03 0.23 11.61 30.07 0.35 0.58 16 12 C 0.50 8.01 7.03 -10.98 -0.08 7.93 16 13 O -0.53 -10.33 13.45 5.56 0.07 -10.26 16 14 N -0.64 -10.65 5.17 -9.74 -0.05 -10.70 16 15 C -0.03 -0.59 6.25 -83.57 -0.52 -1.11 16 16 C -0.10 -2.17 9.90 -39.79 -0.39 -2.57 16 17 C -0.17 -4.28 8.74 -39.26 -0.34 -4.62 16 18 C 0.11 2.97 5.57 -106.80 -0.60 2.37 16 19 C -0.46 -11.99 8.94 -37.85 -0.34 -12.33 16 20 H 0.08 2.07 8.02 -52.49 -0.42 1.65 16 21 C 0.09 2.12 4.77 -17.34 -0.08 2.04 16 22 N -0.77 -18.97 11.78 55.55 0.65 -18.31 16 23 Si 0.90 17.82 29.66 -169.99 -5.04 12.78 16 24 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 25 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 26 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 27 C -0.23 -5.61 9.74 -39.25 -0.38 -5.99 16 28 C -0.06 -1.48 8.59 -39.79 -0.34 -1.82 16 29 H 0.07 0.68 7.64 -51.93 -0.40 0.28 16 30 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 31 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.41 4.57 6.76 -40.82 -0.28 4.29 16 33 H 0.16 1.37 8.06 -52.49 -0.42 0.95 16 34 H 0.21 0.65 8.06 -52.48 -0.42 0.23 16 35 H 0.21 1.22 7.47 -52.49 -0.39 0.83 16 36 H 0.40 5.24 8.34 -40.82 -0.34 4.90 16 37 H 0.09 1.72 8.06 -52.49 -0.42 1.29 16 38 H 0.11 2.71 6.52 -52.49 -0.34 2.37 16 39 H 0.28 6.30 8.30 -40.82 -0.34 5.97 16 40 H 0.09 2.25 8.06 -52.49 -0.42 1.83 16 41 H 0.10 2.34 6.45 -52.49 -0.34 2.00 16 LS Contribution 359.73 15.07 5.42 5.42 Total: -1.00 -32.07 359.73 -7.02 -39.09 By element: Atomic # 1 Polarization: 18.31 SS G_CDS: -4.57 Total: 13.74 kcal Atomic # 6 Polarization: -9.54 SS G_CDS: -3.40 Total: -12.93 kcal Atomic # 7 Polarization: -38.23 SS G_CDS: 0.33 Total: -37.91 kcal Atomic # 8 Polarization: -20.43 SS G_CDS: 0.24 Total: -20.19 kcal Atomic # 14 Polarization: 17.82 SS G_CDS: -5.04 Total: 12.78 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -32.07 -7.02 -39.09 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338268414.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.346 kcal (2) G-P(sol) polarization free energy of solvation -32.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.84 seconds