Wall clock time and date at job start Tue Mar 31 2020 16:20:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 109.47300 * 2 1 4 4 N 1.46497 * 109.46953 * 239.99788 * 2 1 3 5 5 C 1.34779 * 119.99819 * 85.27893 * 4 2 1 6 6 O 1.21609 * 120.00341 * 359.72067 * 5 4 2 7 7 C 1.47387 * 119.99875 * 179.72424 * 5 4 2 8 8 C 1.47018 * 127.19226 * 179.97438 * 7 5 4 9 9 C 1.34176 * 105.95383 * 179.97438 * 8 7 5 10 10 O 1.34215 * 109.12662 * 0.02562 * 9 8 7 11 11 C 1.33659 * 110.90453 * 359.75800 * 10 9 8 12 12 C 1.50698 * 109.47585 * 119.99809 * 2 1 3 13 13 O 1.21280 * 120.00282 * 119.99624 * 12 2 1 14 14 N 1.34782 * 119.99959 * 300.00228 * 12 2 1 15 15 C 1.39237 * 120.00065 * 176.68646 * 14 12 2 16 16 C 1.39479 * 119.83341 * 217.49050 * 15 14 12 17 17 C 1.36376 * 120.17002 * 179.76385 * 16 15 14 18 18 C 1.40869 * 119.82604 * 0.50898 * 17 16 15 19 19 C 1.41149 * 120.16656 * 179.72224 * 18 17 16 20 20 H 1.07996 * 120.00572 * 158.00658 * 19 18 17 21 21 C 1.39907 * 119.99705 * 338.00844 * 19 18 17 22 22 N 1.30870 * 119.99978 * 327.57545 * 21 19 18 23 23 Si 1.86801 * 120.00004 * 147.58153 * 21 19 18 24 24 H 1.48494 * 109.47118 * 94.98542 * 23 21 19 25 25 H 1.48506 * 109.46825 * 214.98293 * 23 21 19 26 26 H 1.48494 * 109.47151 * 334.98333 * 23 21 19 27 27 C 1.40871 * 119.67493 * 359.74551 * 18 17 16 28 28 C 1.36385 * 119.82490 * 359.97438 * 27 18 17 29 29 H 1.08999 * 109.46890 * 300.00348 * 1 2 3 30 30 H 1.08998 * 109.47326 * 60.00233 * 1 2 3 31 31 H 1.08998 * 109.47333 * 180.02562 * 1 2 3 32 32 H 0.97003 * 120.00079 * 264.99517 * 4 2 1 33 33 H 1.08001 * 127.02289 * 359.97438 * 8 7 5 34 34 H 1.08003 * 125.43876 * 179.97438 * 9 8 7 35 35 H 1.08000 * 125.80255 * 180.27119 * 11 10 9 36 36 H 0.96999 * 119.99888 * 356.68901 * 14 12 2 37 37 H 1.08001 * 119.91201 * 0.02562 * 16 15 14 38 38 H 1.07994 * 120.08766 * 180.25653 * 17 16 15 39 39 H 0.97005 * 120.00281 * 180.02562 * 22 21 19 40 40 H 1.08001 * 120.09284 * 179.97438 * 27 18 17 41 41 H 1.07996 * 119.91498 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0182 -0.6906 -1.1961 5 6 2.1522 -0.0169 -2.3557 6 8 1.8630 1.1630 -2.4104 7 6 2.6493 -0.7103 -3.5576 8 6 2.8549 -0.1344 -4.8946 9 6 3.3162 -1.1351 -5.6602 10 8 3.4070 -2.2502 -4.9187 11 6 3.0192 -2.0193 -3.6607 12 6 2.0324 -0.7103 1.2304 13 8 2.7296 -1.6964 1.1192 14 7 1.7068 -0.2498 2.4546 15 6 2.1131 -0.9449 3.5906 16 6 1.2634 -1.0288 4.6936 17 6 1.6524 -1.7118 5.8080 18 6 2.9203 -2.3245 5.8473 19 6 3.3325 -3.0283 6.9993 20 1 4.1077 -3.7768 6.9263 21 6 2.7370 -2.7563 8.2357 22 7 2.3212 -1.5460 8.5096 23 14 2.5353 -4.1206 9.4956 24 1 3.6804 -4.0948 10.4407 25 1 1.2697 -3.9186 10.2457 26 1 2.4956 -5.4330 8.8020 27 6 3.7750 -2.2309 4.7314 28 6 3.3697 -1.5493 3.6219 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 2.2490 -1.6318 -1.1525 33 1 2.6721 0.8857 -5.1985 34 1 3.5727 -1.0562 -6.7064 35 1 3.0002 -2.7459 -2.8619 36 1 1.1894 0.5657 2.5442 37 1 0.2933 -0.5551 4.6634 38 1 0.9919 -1.7794 6.6597 39 1 1.9086 -1.3573 9.3670 40 1 4.7486 -2.6978 4.7544 41 1 4.0239 -1.4762 2.7657 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000338268414.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:20:31 Heat of formation + Delta-G solvation = -55.755924 kcal Electronic energy + Delta-G solvation = -26166.417387 eV Core-core repulsion = 22204.906241 eV Total energy + Delta-G solvation = -3961.511146 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -43.49175 -41.62536 -40.36284 -39.05965 -36.37592 -36.01322 -34.88401 -33.97272 -32.24671 -31.45270 -30.83075 -30.19677 -27.07658 -25.85934 -24.40604 -23.26784 -22.52377 -22.37748 -21.21056 -21.16546 -19.74480 -19.28117 -18.50799 -17.84808 -17.26439 -17.10712 -16.95390 -16.76702 -16.35818 -15.89362 -15.81162 -15.64587 -15.18509 -14.78942 -14.50442 -14.45619 -14.00738 -13.88897 -13.84822 -13.74074 -13.42704 -13.27509 -13.26128 -12.84483 -12.70648 -12.66873 -12.32861 -11.90963 -11.59547 -11.29344 -11.16726 -10.89024 -10.80958 -10.52337 -10.30097 -9.75904 -9.48122 -9.03235 -8.74201 -6.24269 0.30734 0.79240 1.12406 1.13832 1.36171 1.41270 1.53683 1.65099 1.77772 2.06570 2.19449 2.25013 2.43456 2.63460 3.51881 3.63263 3.72288 3.77021 3.96235 4.05110 4.12490 4.39554 4.47707 4.52687 4.63218 4.73857 4.77256 4.89837 4.98906 5.09462 5.13364 5.15087 5.19894 5.27314 5.33663 5.42121 5.63708 5.85641 5.97462 6.00764 6.07329 6.34493 6.37805 6.59076 6.65551 6.88637 6.97133 7.05003 7.28912 8.19331 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.028180 B = 0.002120 C = 0.002019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.391073 B =13202.945195 C =13865.435566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.137 3.863 3 H 0.117 0.883 4 N -0.703 5.703 5 C 0.592 3.408 6 O -0.575 6.575 7 C -0.270 4.270 8 C -0.193 4.193 9 C -0.023 4.023 10 O -0.177 6.177 11 C 0.041 3.959 12 C 0.501 3.499 13 O -0.564 6.564 14 N -0.633 5.633 15 C -0.010 4.010 16 C -0.096 4.096 17 C -0.191 4.191 18 C 0.084 3.916 19 C -0.503 4.503 20 H 0.075 0.925 21 C 0.052 3.948 22 N -0.797 5.797 23 Si 0.971 3.029 24 H -0.261 1.261 25 H -0.261 1.261 26 H -0.261 1.261 27 C -0.246 4.246 28 C -0.074 4.074 29 H 0.093 0.907 30 H 0.073 0.927 31 H 0.065 0.935 32 H 0.413 0.587 33 H 0.160 0.840 34 H 0.249 0.751 35 H 0.237 0.763 36 H 0.417 0.583 37 H 0.125 0.875 38 H 0.098 0.902 39 H 0.295 0.705 40 H 0.091 0.909 41 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.075 1.572 -20.256 20.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.028 3.972 3 H 0.134 0.866 4 N -0.357 5.357 5 C 0.382 3.618 6 O -0.455 6.455 7 C -0.274 4.274 8 C -0.213 4.213 9 C -0.089 4.089 10 O -0.072 6.072 11 C -0.029 4.029 12 C 0.288 3.712 13 O -0.443 6.443 14 N -0.277 5.277 15 C -0.103 4.103 16 C -0.116 4.116 17 C -0.210 4.210 18 C 0.081 3.919 19 C -0.531 4.531 20 H 0.093 0.907 21 C -0.168 4.168 22 N -0.420 5.420 23 Si 0.791 3.209 24 H -0.185 1.185 25 H -0.185 1.185 26 H -0.185 1.185 27 C -0.266 4.266 28 C -0.093 4.093 29 H 0.112 0.888 30 H 0.092 0.908 31 H 0.084 0.916 32 H 0.251 0.749 33 H 0.177 0.823 34 H 0.265 0.735 35 H 0.253 0.747 36 H 0.254 0.746 37 H 0.143 0.857 38 H 0.116 0.884 39 H 0.106 0.894 40 H 0.110 0.890 41 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -3.804 1.634 -20.321 20.738 hybrid contribution 0.007 -0.168 1.043 1.056 sum -3.797 1.466 -19.278 19.703 Atomic orbital electron populations 1.22105 0.90759 1.03643 1.04522 1.20714 0.97018 0.97458 0.81975 0.86562 1.45580 1.67080 1.14849 1.08148 1.17511 0.76319 0.85642 0.82342 1.90749 1.52483 1.16823 1.85489 1.21514 1.14267 0.95920 0.95744 1.22958 1.05479 1.01794 0.91043 1.24682 1.03227 0.82033 0.98932 1.83853 1.66134 1.37264 1.19934 1.24990 0.95660 0.96407 0.85871 1.20972 0.80528 0.84518 0.85215 1.90666 1.38861 1.28083 1.86679 1.42715 1.54559 1.27127 1.03349 1.17059 0.95346 1.08980 0.88894 1.20443 0.98137 0.99952 0.93052 1.20654 0.96862 1.05512 0.98011 1.17918 0.91451 0.89817 0.92668 1.19715 1.20473 1.19974 0.92923 0.90699 1.26724 0.91686 0.97522 1.00868 1.69937 1.26831 1.21125 1.24114 0.85379 0.79265 0.79065 0.77198 1.18516 1.18487 1.18499 1.20721 0.99756 1.09600 0.96506 1.20396 0.94553 0.97914 0.96482 0.88832 0.90805 0.91581 0.74903 0.82281 0.73464 0.74655 0.74559 0.85685 0.88374 0.89443 0.89048 0.87941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.86 9.39 71.98 0.68 -2.19 16 2 C 0.14 3.24 2.98 44.24 0.13 3.37 16 3 H 0.12 2.75 7.57 -2.39 -0.02 2.74 16 4 N -0.70 -16.39 4.94 -449.43 -2.22 -18.61 16 5 C 0.59 15.17 7.78 86.65 0.67 15.85 16 6 O -0.57 -18.26 16.64 -4.06 -0.07 -18.33 16 7 C -0.27 -5.67 6.31 -18.99 -0.12 -5.79 16 8 C -0.19 -3.45 11.01 23.65 0.26 -3.19 16 9 C -0.02 -0.28 12.03 66.89 0.80 0.52 16 10 O -0.18 -2.63 10.52 4.41 0.05 -2.58 16 11 C 0.04 0.64 11.61 67.39 0.78 1.43 16 12 C 0.50 15.38 7.03 87.66 0.62 16.00 16 13 O -0.56 -21.36 13.45 -3.03 -0.04 -21.40 16 14 N -0.63 -19.80 5.17 -303.11 -1.57 -21.36 16 15 C -0.01 -0.41 6.25 38.56 0.24 -0.17 16 16 C -0.10 -4.12 9.90 22.13 0.22 -3.90 16 17 C -0.19 -9.59 8.74 22.48 0.20 -9.40 16 18 C 0.08 4.54 5.57 -21.28 -0.12 4.42 16 19 C -0.50 -27.00 8.94 23.39 0.21 -26.79 16 20 H 0.07 3.95 8.02 -2.91 -0.02 3.93 16 21 C 0.05 2.54 4.77 85.24 0.41 2.94 16 22 N -0.80 -39.85 11.78 21.82 0.26 -39.59 16 23 Si 0.97 36.74 29.66 68.60 2.03 38.78 16 24 H -0.26 -9.44 7.11 99.48 0.71 -8.73 16 25 H -0.26 -9.24 7.11 99.48 0.71 -8.54 16 26 H -0.26 -9.96 7.11 99.48 0.71 -9.25 16 27 C -0.25 -12.67 9.74 22.48 0.22 -12.45 16 28 C -0.07 -3.47 8.59 22.14 0.19 -3.28 16 29 H 0.09 1.40 7.64 -2.39 -0.02 1.39 16 30 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.41 8.77 6.76 -92.71 -0.63 8.14 16 33 H 0.16 2.71 8.06 -2.91 -0.02 2.68 16 34 H 0.25 0.63 8.06 -2.91 -0.02 0.61 16 35 H 0.24 2.23 7.47 -2.91 -0.02 2.21 16 36 H 0.42 9.78 8.34 -92.71 -0.77 9.01 16 37 H 0.13 4.42 8.06 -2.91 -0.02 4.40 16 38 H 0.10 5.04 6.52 -2.91 -0.02 5.02 16 39 H 0.29 13.06 8.30 -92.70 -0.77 12.29 16 40 H 0.09 4.58 8.06 -2.91 -0.02 4.56 16 41 H 0.10 4.75 6.45 -2.91 -0.02 4.73 16 Total: -1.00 -71.42 359.73 3.53 -67.89 By element: Atomic # 1 Polarization: 38.12 SS G_CDS: -0.30 Total: 37.82 kcal Atomic # 6 Polarization: -28.01 SS G_CDS: 5.39 Total: -22.62 kcal Atomic # 7 Polarization: -76.03 SS G_CDS: -3.53 Total: -79.56 kcal Atomic # 8 Polarization: -42.25 SS G_CDS: -0.06 Total: -42.31 kcal Atomic # 14 Polarization: 36.74 SS G_CDS: 2.03 Total: 38.78 kcal Total: -71.42 3.53 -67.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338268414.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.131 kcal (2) G-P(sol) polarization free energy of solvation -71.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds