Wall clock time and date at job start Tue Mar 31 2020 16:56:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34818 * 117.00257 * 2 1 4 4 O 1.21536 * 120.00009 * 0.02562 * 3 2 1 5 5 C 1.47125 * 120.00342 * 180.02562 * 3 2 1 6 6 C 1.38024 * 125.91246 * 179.97438 * 5 3 2 7 7 C 1.39386 * 107.45957 * 179.97438 * 6 5 3 8 8 C 1.38000 * 107.47938 * 359.97438 * 7 6 5 9 9 C 1.47250 * 125.89229 * 179.97438 * 8 7 6 10 10 O 1.21633 * 119.99690 * 182.34906 * 9 8 7 11 11 N 1.34772 * 120.00184 * 2.35596 * 9 8 7 12 12 C 1.39069 * 119.99932 * 187.16721 * 11 9 8 13 13 C 1.39530 * 119.83656 * 147.23127 * 12 11 9 14 14 C 1.36345 * 120.16640 * 180.25572 * 13 12 11 15 15 C 1.40894 * 119.82732 * 359.51964 * 14 13 12 16 16 C 1.41116 * 120.15858 * 180.23258 * 15 14 13 17 17 H 1.08006 * 120.00059 * 15.07004 * 16 15 14 18 18 C 1.39922 * 120.00081 * 195.06870 * 16 15 14 19 19 N 1.30865 * 119.99857 * 28.24664 * 18 16 15 20 20 Si 1.86797 * 120.00343 * 208.24299 * 18 16 15 21 21 H 1.48495 * 109.47181 * 59.99820 * 20 18 16 22 22 H 1.48494 * 109.47527 * 180.02562 * 20 18 16 23 23 H 1.48507 * 109.47097 * 300.00273 * 20 18 16 24 24 C 1.40892 * 119.68158 * 0.49485 * 15 14 13 25 25 C 1.36350 * 119.83023 * 359.74004 * 24 15 14 26 26 N 1.36725 * 108.21375 * 0.24111 * 8 7 6 27 27 C 1.46496 * 125.66872 * 179.75994 * 26 8 7 28 28 H 1.08989 * 109.47280 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46633 * 299.99940 * 1 2 3 30 30 H 1.09000 * 109.47045 * 59.99719 * 1 2 3 31 31 H 1.07999 * 126.26984 * 359.97438 * 6 5 3 32 32 H 1.07999 * 126.26279 * 180.02562 * 7 6 5 33 33 H 0.97003 * 120.00264 * 7.15850 * 11 9 8 34 34 H 1.08006 * 119.91786 * 359.97067 * 13 12 11 35 35 H 1.08004 * 120.08633 * 179.74596 * 14 13 12 36 36 H 0.96998 * 119.99858 * 180.02562 * 19 18 16 37 37 H 1.08000 * 120.08408 * 179.70955 * 24 15 14 38 38 H 1.07994 * 119.91774 * 179.97438 * 25 24 15 39 39 H 1.09000 * 109.47469 * 98.04293 * 27 26 8 40 40 H 1.09004 * 109.47568 * 218.04773 * 27 26 8 41 41 H 1.09004 * 109.47288 * 338.04629 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0641 1.2012 0.0000 4 8 1.4022 2.2205 0.0005 5 6 3.5333 1.2782 -0.0006 6 6 4.2833 2.4370 -0.0011 7 6 5.6267 2.0656 -0.0010 8 6 5.6756 0.6864 0.0003 9 6 6.8983 -0.1341 0.0004 10 8 6.8167 -1.3469 -0.0416 11 7 8.1077 0.4588 0.0471 12 6 9.2616 -0.3028 -0.1028 13 6 10.3832 0.2507 -0.7213 14 6 11.5163 -0.4916 -0.8765 15 6 11.5561 -1.8174 -0.4012 16 6 12.7269 -2.5903 -0.5537 17 1 13.6614 -2.1110 -0.8059 18 6 12.6772 -3.9776 -0.3782 19 7 11.5681 -4.6284 -0.6207 20 14 14.1939 -4.9006 0.2023 21 1 14.6082 -4.3854 1.5319 22 1 13.8823 -6.3487 0.3071 23 1 15.2974 -4.7015 -0.7715 24 6 10.4196 -2.3695 0.2220 25 6 9.2919 -1.6167 0.3658 26 7 4.3928 0.2134 -0.0046 27 6 4.0031 -1.1988 -0.0101 28 1 -0.3633 -1.0275 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 3.8994 3.4464 -0.0016 32 1 6.4745 2.7347 -0.0009 33 1 8.1733 1.4167 0.1852 34 1 10.3521 1.2682 -1.0823 35 1 12.3823 -0.0632 -1.3591 36 1 11.5335 -5.5901 -0.4987 37 1 10.4414 -3.3867 0.5845 38 1 8.4198 -2.0387 0.8429 39 1 3.7651 -1.5140 1.0059 40 1 3.1279 -1.3318 -0.6462 41 1 4.8262 -1.8014 -0.3940 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000338598541.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:56:02 Heat of formation + Delta-G solvation = -42.716443 kcal Electronic energy + Delta-G solvation = -26486.640417 eV Core-core repulsion = 22525.694705 eV Total energy + Delta-G solvation = -3960.945712 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.78194 -40.27088 -39.22465 -37.17231 -36.74099 -34.70400 -33.40231 -32.69258 -30.55421 -29.49023 -29.04665 -27.86528 -26.69853 -25.40056 -23.73820 -22.09054 -21.37834 -20.93967 -20.03756 -19.37145 -18.20102 -17.57226 -17.39177 -16.86645 -16.80766 -16.01055 -15.60081 -15.33733 -14.91412 -14.33398 -14.25831 -13.94253 -13.69687 -13.56210 -13.35920 -13.08898 -12.99378 -12.74996 -12.55289 -12.32479 -12.13056 -12.00487 -11.95124 -11.49242 -11.15879 -11.13667 -11.06085 -11.01509 -10.56583 -10.15057 -9.89985 -9.55188 -9.18724 -9.01153 -8.66424 -8.54858 -7.55636 -7.18204 -6.89634 -4.31690 0.77268 1.90983 2.22208 2.51692 2.69160 2.87311 3.01504 3.02291 3.06744 3.15923 3.56231 3.69930 3.84778 4.42490 4.50543 4.74468 4.77577 4.84566 4.85702 5.01334 5.17788 5.22665 5.31019 5.64730 5.67494 5.78377 5.81497 5.99750 6.12210 6.34302 6.40060 6.67168 6.74852 6.78992 6.91874 7.00083 7.09487 7.24799 7.43070 7.55986 7.61737 7.90862 8.00672 8.15476 8.24598 8.56284 8.63093 8.81027 8.95653 9.99700 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.027858 B = 0.002319 C = 0.002159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.839765 B =12072.952141 C =12964.161456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.360 6.360 3 C 0.540 3.460 4 O -0.499 6.499 5 C -0.031 4.031 6 C -0.105 4.105 7 C -0.168 4.168 8 C 0.019 3.981 9 C 0.563 3.437 10 O -0.530 6.530 11 N -0.625 5.625 12 C -0.027 4.027 13 C -0.093 4.093 14 C -0.224 4.224 15 C 0.106 3.894 16 C -0.454 4.454 17 H 0.081 0.919 18 C 0.080 3.920 19 N -0.767 5.767 20 Si 0.905 3.095 21 H -0.261 1.261 22 H -0.277 1.277 23 H -0.264 1.264 24 C -0.177 4.177 25 C -0.081 4.081 26 N -0.378 5.378 27 C 0.054 3.946 28 H 0.103 0.897 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.156 0.844 32 H 0.156 0.844 33 H 0.398 0.602 34 H 0.091 0.909 35 H 0.095 0.905 36 H 0.285 0.715 37 H 0.122 0.878 38 H 0.112 0.888 39 H 0.081 0.919 40 H 0.091 0.909 41 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.426 7.526 2.037 17.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.277 6.277 3 C 0.385 3.615 4 O -0.386 6.386 5 C -0.145 4.145 6 C -0.131 4.131 7 C -0.193 4.193 8 C -0.102 4.102 9 C 0.350 3.650 10 O -0.409 6.409 11 N -0.266 5.266 12 C -0.119 4.119 13 C -0.113 4.113 14 C -0.244 4.244 15 C 0.103 3.897 16 C -0.481 4.481 17 H 0.099 0.901 18 C -0.142 4.142 19 N -0.390 5.390 20 Si 0.729 3.271 21 H -0.186 1.186 22 H -0.202 1.202 23 H -0.188 1.188 24 C -0.197 4.197 25 C -0.101 4.101 26 N -0.051 5.051 27 C -0.086 4.086 28 H 0.122 0.878 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.174 0.826 32 H 0.174 0.826 33 H 0.233 0.767 34 H 0.109 0.891 35 H 0.114 0.886 36 H 0.096 0.904 37 H 0.139 0.861 38 H 0.130 0.870 39 H 0.099 0.901 40 H 0.110 0.890 41 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -15.998 6.308 1.952 17.307 hybrid contribution 0.336 0.069 0.215 0.405 sum -15.662 6.377 2.167 17.048 Atomic orbital electron populations 1.23305 0.75672 1.03920 1.02768 1.86627 1.23933 1.32530 1.84568 1.19906 0.86850 0.81763 0.72993 1.90875 1.65370 1.35817 1.46582 1.19451 0.86627 0.88168 1.20270 1.21180 0.91992 0.96839 1.03126 1.21321 0.97341 0.92345 1.08325 1.20621 0.85063 0.93616 1.10938 1.17052 0.82240 0.86869 0.78838 1.90737 1.86190 1.13423 1.50544 1.42488 1.03992 1.10907 1.69245 1.17095 0.86309 0.93919 1.14554 1.20019 0.93618 0.98053 0.99611 1.20436 0.97581 0.96518 1.09897 1.17669 0.92646 0.91148 0.88235 1.19579 0.96169 0.91301 1.41096 0.90099 1.26028 0.97485 0.98420 0.92259 1.69911 1.28285 1.10130 1.30658 0.86413 0.81955 0.78020 0.80733 1.18557 1.20241 1.18818 1.21049 0.93324 1.00610 1.04717 1.20657 0.98032 0.92582 0.98789 1.43913 1.04363 1.07214 1.49587 1.22643 1.04158 0.77423 1.04367 0.87844 0.91677 0.91665 0.82607 0.82638 0.76738 0.89108 0.88644 0.90425 0.86074 0.87005 0.90088 0.89037 0.86332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.26 10.57 101.05 1.07 1.32 16 2 O -0.36 -3.75 8.13 -40.82 -0.33 -4.08 16 3 C 0.54 6.76 7.94 34.34 0.27 7.03 16 4 O -0.50 -7.03 16.67 -19.29 -0.32 -7.35 16 5 C -0.03 -0.41 6.87 -82.11 -0.56 -0.97 16 6 C -0.11 -1.24 10.60 -39.23 -0.42 -1.66 16 7 C -0.17 -1.99 10.31 -39.24 -0.40 -2.39 16 8 C 0.02 0.27 6.87 -82.11 -0.56 -0.29 16 9 C 0.56 9.94 7.66 -12.60 -0.10 9.84 16 10 O -0.53 -11.01 11.62 5.25 0.06 -10.95 16 11 N -0.62 -10.77 5.28 -10.77 -0.06 -10.83 16 12 C -0.03 -0.58 6.36 -83.62 -0.53 -1.11 16 13 C -0.09 -1.98 9.89 -39.78 -0.39 -2.37 16 14 C -0.22 -5.30 9.74 -39.26 -0.38 -5.68 16 15 C 0.11 2.77 5.65 -106.80 -0.60 2.16 16 16 C -0.45 -11.68 9.00 -37.86 -0.34 -12.02 16 17 H 0.08 1.98 7.98 -52.48 -0.42 1.56 16 18 C 0.08 1.94 4.99 -17.33 -0.09 1.85 16 19 N -0.77 -19.40 11.00 55.55 0.61 -18.78 16 20 Si 0.91 17.96 29.64 -169.99 -5.04 12.92 16 21 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 22 H -0.28 -5.36 7.11 56.52 0.40 -4.96 16 23 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 24 C -0.18 -4.63 8.76 -39.26 -0.34 -4.98 16 25 C -0.08 -1.96 8.66 -39.78 -0.34 -2.30 16 26 N -0.38 -5.18 3.17 -115.88 -0.37 -5.55 16 27 C 0.05 0.66 9.96 59.84 0.60 1.25 16 28 H 0.10 0.44 8.14 -51.94 -0.42 0.01 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.16 1.53 8.06 -52.49 -0.42 1.11 16 32 H 0.16 1.38 7.44 -52.49 -0.39 0.99 16 33 H 0.40 5.31 7.71 -40.82 -0.31 4.99 16 34 H 0.09 1.62 8.06 -52.48 -0.42 1.19 16 35 H 0.10 2.09 8.06 -52.48 -0.42 1.67 16 36 H 0.28 6.51 8.30 -40.82 -0.34 6.17 16 37 H 0.12 3.27 5.86 -52.49 -0.31 2.97 16 38 H 0.11 2.71 5.92 -52.49 -0.31 2.40 16 39 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.09 0.94 6.63 -51.93 -0.34 0.60 16 41 H 0.12 1.68 5.79 -51.93 -0.30 1.37 16 LS Contribution 353.01 15.07 5.32 5.32 Total: -1.00 -30.80 353.01 -7.74 -38.54 By element: Atomic # 1 Polarization: 15.56 SS G_CDS: -4.48 Total: 11.08 kcal Atomic # 6 Polarization: -7.18 SS G_CDS: -3.14 Total: -10.31 kcal Atomic # 7 Polarization: -35.35 SS G_CDS: 0.19 Total: -35.16 kcal Atomic # 8 Polarization: -21.79 SS G_CDS: -0.59 Total: -22.38 kcal Atomic # 14 Polarization: 17.96 SS G_CDS: -5.04 Total: 12.92 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -30.80 -7.74 -38.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338598541.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.178 kcal (2) G-P(sol) polarization free energy of solvation -30.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds