Wall clock time and date at job start Tue Mar 31 2020 16:56:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34818 * 117.00257 * 2 1 4 4 O 1.21536 * 120.00009 * 0.02562 * 3 2 1 5 5 C 1.47125 * 120.00342 * 180.02562 * 3 2 1 6 6 C 1.38024 * 125.91246 * 179.97438 * 5 3 2 7 7 C 1.39386 * 107.45957 * 179.97438 * 6 5 3 8 8 C 1.38000 * 107.47938 * 359.97438 * 7 6 5 9 9 C 1.47250 * 125.89229 * 179.97438 * 8 7 6 10 10 O 1.21633 * 119.99690 * 182.34906 * 9 8 7 11 11 N 1.34772 * 120.00184 * 2.35596 * 9 8 7 12 12 C 1.39069 * 119.99932 * 187.16721 * 11 9 8 13 13 C 1.39530 * 119.83656 * 147.23127 * 12 11 9 14 14 C 1.36345 * 120.16640 * 180.25572 * 13 12 11 15 15 C 1.40894 * 119.82732 * 359.51964 * 14 13 12 16 16 C 1.41116 * 120.15858 * 180.23258 * 15 14 13 17 17 H 1.08006 * 120.00059 * 15.07004 * 16 15 14 18 18 C 1.39922 * 120.00081 * 195.06870 * 16 15 14 19 19 N 1.30865 * 119.99857 * 28.24664 * 18 16 15 20 20 Si 1.86797 * 120.00343 * 208.24299 * 18 16 15 21 21 H 1.48495 * 109.47181 * 59.99820 * 20 18 16 22 22 H 1.48494 * 109.47527 * 180.02562 * 20 18 16 23 23 H 1.48507 * 109.47097 * 300.00273 * 20 18 16 24 24 C 1.40892 * 119.68158 * 0.49485 * 15 14 13 25 25 C 1.36350 * 119.83023 * 359.74004 * 24 15 14 26 26 N 1.36725 * 108.21375 * 0.24111 * 8 7 6 27 27 C 1.46496 * 125.66872 * 179.75994 * 26 8 7 28 28 H 1.08989 * 109.47280 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46633 * 299.99940 * 1 2 3 30 30 H 1.09000 * 109.47045 * 59.99719 * 1 2 3 31 31 H 1.07999 * 126.26984 * 359.97438 * 6 5 3 32 32 H 1.07999 * 126.26279 * 180.02562 * 7 6 5 33 33 H 0.97003 * 120.00264 * 7.15850 * 11 9 8 34 34 H 1.08006 * 119.91786 * 359.97067 * 13 12 11 35 35 H 1.08004 * 120.08633 * 179.74596 * 14 13 12 36 36 H 0.96998 * 119.99858 * 180.02562 * 19 18 16 37 37 H 1.08000 * 120.08408 * 179.70955 * 24 15 14 38 38 H 1.07994 * 119.91774 * 179.97438 * 25 24 15 39 39 H 1.09000 * 109.47469 * 98.04293 * 27 26 8 40 40 H 1.09004 * 109.47568 * 218.04773 * 27 26 8 41 41 H 1.09004 * 109.47288 * 338.04629 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0641 1.2012 0.0000 4 8 1.4022 2.2205 0.0005 5 6 3.5333 1.2782 -0.0006 6 6 4.2833 2.4370 -0.0011 7 6 5.6267 2.0656 -0.0010 8 6 5.6756 0.6864 0.0003 9 6 6.8983 -0.1341 0.0004 10 8 6.8167 -1.3469 -0.0416 11 7 8.1077 0.4588 0.0471 12 6 9.2616 -0.3028 -0.1028 13 6 10.3832 0.2507 -0.7213 14 6 11.5163 -0.4916 -0.8765 15 6 11.5561 -1.8174 -0.4012 16 6 12.7269 -2.5903 -0.5537 17 1 13.6614 -2.1110 -0.8059 18 6 12.6772 -3.9776 -0.3782 19 7 11.5681 -4.6284 -0.6207 20 14 14.1939 -4.9006 0.2023 21 1 14.6082 -4.3854 1.5319 22 1 13.8823 -6.3487 0.3071 23 1 15.2974 -4.7015 -0.7715 24 6 10.4196 -2.3695 0.2220 25 6 9.2919 -1.6167 0.3658 26 7 4.3928 0.2134 -0.0046 27 6 4.0031 -1.1988 -0.0101 28 1 -0.3633 -1.0275 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 3.8994 3.4464 -0.0016 32 1 6.4745 2.7347 -0.0009 33 1 8.1733 1.4167 0.1852 34 1 10.3521 1.2682 -1.0823 35 1 12.3823 -0.0632 -1.3591 36 1 11.5335 -5.5901 -0.4987 37 1 10.4414 -3.3867 0.5845 38 1 8.4198 -2.0387 0.8429 39 1 3.7651 -1.5140 1.0059 40 1 3.1279 -1.3318 -0.6462 41 1 4.8262 -1.8014 -0.3940 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000338598541.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:56:01 Heat of formation + Delta-G solvation = -60.046137 kcal Electronic energy + Delta-G solvation = -26487.391888 eV Core-core repulsion = 22525.694705 eV Total energy + Delta-G solvation = -3961.697183 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.81285 -41.31539 -40.61159 -38.88443 -37.64768 -36.33715 -34.97906 -33.84783 -31.82596 -31.28155 -30.59405 -28.68406 -27.66566 -26.98524 -25.01830 -23.35830 -23.01253 -22.43904 -21.14113 -20.69674 -19.31359 -19.17376 -18.69783 -18.02994 -17.69171 -17.41894 -17.07783 -16.66368 -16.18489 -15.81931 -15.60281 -15.17849 -14.90090 -14.65628 -14.50012 -14.37203 -14.30962 -13.94458 -13.87234 -13.75754 -13.37041 -13.24636 -13.19627 -12.92973 -12.78433 -12.71249 -12.29023 -11.97001 -11.91076 -11.83442 -11.66215 -11.26007 -10.83522 -10.41374 -9.96231 -9.62394 -9.42113 -8.96922 -8.69417 -6.21774 -0.28151 0.74313 1.05453 1.19855 1.27913 1.38231 1.49336 1.56318 1.63146 1.91817 2.18237 2.23733 2.36537 2.71436 3.52290 3.62646 3.78848 3.81489 4.08884 4.24889 4.28880 4.31481 4.39277 4.47977 4.54420 4.64144 4.71236 4.84710 4.95698 5.02915 5.09774 5.12911 5.20103 5.29369 5.42273 5.44691 5.70152 5.72547 5.77575 5.89339 6.10585 6.11831 6.33873 6.51533 6.66576 6.69404 6.91667 7.01434 7.29832 8.21964 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.027858 B = 0.002319 C = 0.002159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.839765 B =12072.952141 C =12964.161456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.362 6.362 3 C 0.542 3.458 4 O -0.517 6.517 5 C -0.035 4.035 6 C -0.107 4.107 7 C -0.142 4.142 8 C -0.012 4.012 9 C 0.566 3.434 10 O -0.568 6.568 11 N -0.617 5.617 12 C -0.012 4.012 13 C -0.087 4.087 14 C -0.235 4.235 15 C 0.074 3.926 16 C -0.491 4.491 17 H 0.084 0.916 18 C 0.038 3.962 19 N -0.805 5.805 20 Si 0.980 3.020 21 H -0.260 1.260 22 H -0.269 1.269 23 H -0.254 1.254 24 C -0.204 4.204 25 C -0.095 4.095 26 N -0.385 5.385 27 C 0.056 3.944 28 H 0.133 0.867 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.179 0.821 32 H 0.190 0.810 33 H 0.421 0.579 34 H 0.136 0.864 35 H 0.110 0.890 36 H 0.291 0.709 37 H 0.100 0.900 38 H 0.103 0.897 39 H 0.089 0.911 40 H 0.108 0.892 41 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.171 9.624 2.020 18.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.279 6.279 3 C 0.388 3.612 4 O -0.406 6.406 5 C -0.149 4.149 6 C -0.132 4.132 7 C -0.168 4.168 8 C -0.132 4.132 9 C 0.354 3.646 10 O -0.450 6.450 11 N -0.261 5.261 12 C -0.105 4.105 13 C -0.107 4.107 14 C -0.255 4.255 15 C 0.071 3.929 16 C -0.518 4.518 17 H 0.102 0.898 18 C -0.180 4.180 19 N -0.429 5.429 20 Si 0.800 3.200 21 H -0.184 1.184 22 H -0.193 1.193 23 H -0.178 1.178 24 C -0.224 4.224 25 C -0.115 4.115 26 N -0.058 5.058 27 C -0.083 4.083 28 H 0.151 0.849 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.196 0.804 32 H 0.207 0.793 33 H 0.259 0.741 34 H 0.154 0.846 35 H 0.128 0.872 36 H 0.102 0.898 37 H 0.118 0.882 38 H 0.121 0.879 39 H 0.108 0.892 40 H 0.126 0.874 41 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -16.757 8.437 1.933 18.861 hybrid contribution 0.287 -0.471 0.208 0.589 sum -16.471 7.966 2.141 18.421 Atomic orbital electron populations 1.23640 0.73638 1.06039 1.03028 1.86615 1.25900 1.31426 1.83951 1.19874 0.86718 0.82065 0.72553 1.90865 1.65688 1.36488 1.47578 1.19795 0.87094 0.88438 1.19622 1.21534 0.91784 0.97492 1.02403 1.21734 0.98507 0.91224 1.05296 1.20270 0.84166 0.94274 1.14453 1.17468 0.83144 0.86649 0.77293 1.90734 1.86859 1.15430 1.51930 1.42295 1.02696 1.11714 1.69402 1.17132 0.87838 0.93138 1.12366 1.20383 0.92262 0.99793 0.98247 1.20718 0.99083 0.95898 1.09763 1.18018 0.92912 0.92744 0.89193 1.19844 0.96321 0.92429 1.43226 0.89807 1.26919 1.00633 0.98895 0.91558 1.69964 1.30523 1.10726 1.31722 0.85280 0.77860 0.76749 0.80071 1.18419 1.19345 1.17778 1.20969 0.94624 1.00294 1.06557 1.20712 0.97132 0.94145 0.99479 1.44020 1.04307 1.07706 1.49784 1.22612 1.03727 0.76870 1.05138 0.84877 0.91425 0.91427 0.80405 0.79329 0.74077 0.84579 0.87241 0.89820 0.88223 0.87874 0.89224 0.87361 0.88737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 10.57 113.37 1.20 1.54 16 2 O -0.36 -6.90 8.13 -57.30 -0.47 -7.37 16 3 C 0.54 12.59 7.94 70.15 0.56 13.15 16 4 O -0.52 -13.60 16.67 19.72 0.33 -13.27 16 5 C -0.04 -0.84 6.87 40.65 0.28 -0.56 16 6 C -0.11 -2.17 10.60 22.50 0.24 -1.94 16 7 C -0.14 -2.88 10.31 22.49 0.23 -2.64 16 8 C -0.01 -0.33 6.87 40.69 0.28 -0.05 16 9 C 0.57 19.57 7.66 86.61 0.66 20.24 16 10 O -0.57 -24.24 11.62 -4.14 -0.05 -24.28 16 11 N -0.62 -20.16 5.28 -306.22 -1.62 -21.77 16 12 C -0.01 -0.49 6.36 38.62 0.25 -0.24 16 13 C -0.09 -3.54 9.89 22.14 0.22 -3.32 16 14 C -0.23 -11.02 9.74 22.48 0.22 -10.80 16 15 C 0.07 4.00 5.65 -21.27 -0.12 3.88 16 16 C -0.49 -26.11 9.00 23.38 0.21 -25.90 16 17 H 0.08 4.22 7.98 -2.91 -0.02 4.20 16 18 C 0.04 1.91 4.99 85.24 0.43 2.33 16 19 N -0.81 -42.62 11.00 21.82 0.24 -42.38 16 20 Si 0.98 37.53 29.64 68.60 2.03 39.57 16 21 H -0.26 -9.80 7.11 99.48 0.71 -9.09 16 22 H -0.27 -9.79 7.11 99.48 0.71 -9.09 16 23 H -0.25 -9.24 7.11 99.48 0.71 -8.53 16 24 C -0.20 -11.24 8.76 22.48 0.20 -11.04 16 25 C -0.09 -4.75 8.66 22.14 0.19 -4.56 16 26 N -0.39 -10.08 3.17 -520.53 -1.65 -11.73 16 27 C 0.06 1.35 9.96 127.77 1.27 2.63 16 28 H 0.13 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.18 2.82 8.06 -2.91 -0.02 2.80 16 32 H 0.19 2.40 7.44 -2.91 -0.02 2.38 16 33 H 0.42 9.76 7.71 -92.71 -0.72 9.05 16 34 H 0.14 4.27 8.06 -2.91 -0.02 4.24 16 35 H 0.11 4.72 8.06 -2.91 -0.02 4.69 16 36 H 0.29 13.89 8.30 -92.71 -0.77 13.12 16 37 H 0.10 5.78 5.86 -2.91 -0.02 5.77 16 38 H 0.10 5.27 5.92 -2.91 -0.02 5.25 16 39 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 40 H 0.11 2.15 6.63 -2.38 -0.02 2.13 16 41 H 0.09 2.77 5.79 -2.39 -0.01 2.76 16 Total: -1.00 -70.16 353.01 5.51 -64.65 By element: Atomic # 1 Polarization: 33.50 SS G_CDS: 0.38 Total: 33.88 kcal Atomic # 6 Polarization: -23.60 SS G_CDS: 6.31 Total: -17.29 kcal Atomic # 7 Polarization: -72.85 SS G_CDS: -3.03 Total: -75.88 kcal Atomic # 8 Polarization: -44.74 SS G_CDS: -0.19 Total: -44.92 kcal Atomic # 14 Polarization: 37.53 SS G_CDS: 2.03 Total: 39.57 kcal Total: -70.16 5.51 -64.65 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338598541.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.605 kcal (2) G-P(sol) polarization free energy of solvation -70.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds