Wall clock time and date at job start Tue Mar 31 2020 16:56:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34902 * 117.00287 * 2 1 4 4 O 1.21623 * 119.99519 * 359.97438 * 3 2 1 5 5 C 1.46472 * 119.99879 * 180.02562 * 3 2 1 6 6 C 1.37994 * 126.16958 * 179.97438 * 5 3 2 7 7 C 1.40181 * 107.09758 * 180.02562 * 6 5 3 8 8 N 1.40582 * 126.12620 * 179.97438 * 7 6 5 9 9 C 1.34776 * 120.00018 * 0.02928 * 8 7 6 10 10 O 1.21624 * 119.99899 * 359.97438 * 9 8 7 11 11 C 1.47595 * 119.99921 * 179.97438 * 9 8 7 12 12 C 1.40034 * 119.89740 * 179.97438 * 11 9 8 13 13 C 1.36299 * 120.11074 * 179.70226 * 12 11 9 14 14 C 1.40900 * 119.89072 * 0.27314 * 13 12 11 15 15 C 1.41085 * 120.10318 * 180.02562 * 14 13 12 16 16 H 1.07998 * 120.00194 * 25.06736 * 15 14 13 17 17 C 1.40227 * 120.00312 * 205.06586 * 15 14 13 18 18 N 1.30650 * 119.99443 * 18.03418 * 17 15 14 19 19 Si 1.86794 * 120.00323 * 198.03692 * 17 15 14 20 20 H 1.48504 * 109.47346 * 94.52683 * 19 17 15 21 21 H 1.48497 * 109.47255 * 214.52788 * 19 17 15 22 22 H 1.48499 * 109.47093 * 334.52728 * 19 17 15 23 23 C 1.40897 * 119.79330 * 0.02562 * 14 13 12 24 24 C 1.36306 * 119.89653 * 359.97438 * 23 14 13 25 25 C 1.36005 * 107.74984 * 0.22442 * 7 6 5 26 26 N 1.35786 * 108.78400 * 359.63001 * 25 7 6 27 27 C 1.46504 * 125.64280 * 180.12416 * 26 25 7 28 28 H 1.08994 * 109.46970 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.46952 * 300.00082 * 1 2 3 30 30 H 1.08993 * 109.46767 * 60.00035 * 1 2 3 31 31 H 1.08003 * 126.45188 * 0.02562 * 6 5 3 32 32 H 0.96999 * 119.99951 * 180.02562 * 8 7 6 33 33 H 1.08009 * 119.94571 * 359.97438 * 12 11 9 34 34 H 1.07997 * 120.05544 * 180.29886 * 13 12 11 35 35 H 0.97005 * 119.99668 * 179.97438 * 18 17 15 36 36 H 1.08003 * 120.05449 * 180.02562 * 23 14 13 37 37 H 1.07999 * 119.94419 * 180.02562 * 24 23 14 38 38 H 1.08002 * 125.60723 * 179.77094 * 25 7 6 39 39 H 1.09003 * 109.46847 * 270.29051 * 27 26 25 40 40 H 1.09001 * 109.47192 * 30.29138 * 27 26 25 41 41 H 1.08999 * 109.47082 * 150.29390 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0646 1.2020 0.0000 4 8 1.4021 2.2220 -0.0005 5 6 3.5273 1.2785 -0.0006 6 6 4.2824 2.4335 -0.0011 7 6 5.6293 2.0454 -0.0021 8 7 6.7402 2.9070 -0.0035 9 6 6.5573 4.2423 -0.0033 10 8 5.4313 4.7018 -0.0024 11 6 7.7236 5.1468 -0.0041 12 6 7.5312 6.5339 -0.0045 13 6 8.6051 7.3732 0.0009 14 6 9.9105 6.8431 0.0009 15 6 11.0254 7.7078 0.0070 16 1 10.9321 8.7064 0.4077 17 6 12.2546 7.2707 -0.5071 18 7 12.2996 6.2307 -1.2967 19 14 13.8275 8.1752 -0.0631 20 1 14.4692 7.5109 1.0997 21 1 14.7562 8.1511 -1.2215 22 1 13.5075 9.5828 0.2855 23 6 10.0992 5.4469 -0.0051 24 6 9.0191 4.6154 -0.0104 25 6 5.6691 0.6859 -0.0072 26 7 4.3969 0.2113 -0.0012 27 6 4.0131 -1.2026 -0.0013 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3632 0.5138 -0.8899 31 1 3.9063 3.4460 -0.0008 32 1 7.6383 2.5404 -0.0045 33 1 6.5301 6.9393 -0.0046 34 1 8.4556 8.4428 0.0055 35 1 13.1499 5.9286 -1.6526 36 1 11.0980 5.0360 -0.0046 37 1 9.1629 3.5450 -0.0146 38 1 6.5651 0.0830 -0.0127 39 1 3.9175 -1.5530 -1.0290 40 1 4.7771 -1.7865 0.5121 41 1 3.0593 -1.3202 0.5129 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340200209.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:56:59 Heat of formation + Delta-G solvation = -48.606148 kcal Electronic energy + Delta-G solvation = -26175.836168 eV Core-core repulsion = 22214.635060 eV Total energy + Delta-G solvation = -3961.201108 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 2.60 seconds Orbital eigenvalues (eV) -41.53493 -40.01759 -38.95920 -37.15068 -36.53949 -34.47156 -33.90996 -32.06565 -30.28226 -29.61157 -29.45058 -27.61357 -26.61706 -25.53273 -23.46681 -22.25315 -21.09598 -20.51085 -20.25005 -19.16627 -18.22679 -17.53919 -17.10017 -16.62338 -16.51073 -15.61658 -15.48777 -15.33176 -15.16339 -14.17108 -14.13605 -14.03061 -13.87330 -13.43455 -13.26316 -13.05734 -12.82639 -12.73805 -12.45383 -12.24214 -12.12490 -12.10017 -11.93125 -11.39604 -11.31589 -11.02515 -10.97675 -10.77901 -10.70589 -10.28380 -10.04456 -9.58128 -9.38972 -8.92216 -8.45491 -7.77532 -7.65614 -7.40047 -7.06775 -4.62920 1.17519 2.10044 2.45738 2.65156 2.66730 2.91376 2.94662 2.97380 3.01836 3.21252 3.72236 3.78374 3.93779 4.56118 4.60276 4.67735 4.84285 4.93813 4.94335 5.00577 5.22758 5.32273 5.38417 5.54388 5.75523 5.89041 5.99735 6.10855 6.20284 6.30488 6.55483 6.74822 6.77964 6.80620 7.00066 7.06879 7.10331 7.33197 7.41383 7.62867 7.67096 7.75736 7.83411 8.04297 8.17324 8.36885 8.60169 8.72220 9.01543 9.85258 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.033340 B = 0.002150 C = 0.002033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.632217 B =13021.870024 C =13768.197009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.366 6.366 3 C 0.539 3.461 4 O -0.496 6.496 5 C -0.048 4.048 6 C -0.091 4.091 7 C 0.076 3.924 8 N -0.658 5.658 9 C 0.572 3.428 10 O -0.555 6.555 11 C -0.283 4.283 12 C -0.019 4.019 13 C -0.238 4.238 14 C 0.129 3.871 15 C -0.440 4.440 16 H 0.086 0.914 17 C 0.074 3.926 18 N -0.770 5.770 19 Si 0.914 3.086 20 H -0.265 1.265 21 H -0.275 1.275 22 H -0.258 1.258 23 C -0.177 4.177 24 C -0.062 4.062 25 C -0.014 4.014 26 N -0.421 5.421 27 C 0.074 3.926 28 H 0.100 0.900 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.177 0.823 32 H 0.407 0.593 33 H 0.103 0.897 34 H 0.099 0.901 35 H 0.287 0.713 36 H 0.120 0.880 37 H 0.089 0.911 38 H 0.173 0.827 39 H 0.075 0.925 40 H 0.084 0.916 41 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.853 -16.461 1.741 19.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.284 6.284 3 C 0.384 3.616 4 O -0.383 6.383 5 C -0.158 4.158 6 C -0.119 4.119 7 C -0.025 4.025 8 N -0.303 5.303 9 C 0.368 3.632 10 O -0.436 6.436 11 C -0.288 4.288 12 C -0.038 4.038 13 C -0.257 4.257 14 C 0.126 3.874 15 C -0.468 4.468 16 H 0.104 0.896 17 C -0.148 4.148 18 N -0.393 5.393 19 Si 0.738 3.262 20 H -0.190 1.190 21 H -0.200 1.200 22 H -0.182 1.182 23 C -0.197 4.197 24 C -0.082 4.082 25 C -0.151 4.151 26 N -0.098 5.098 27 C -0.067 4.067 28 H 0.119 0.881 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.195 0.805 32 H 0.244 0.756 33 H 0.121 0.879 34 H 0.117 0.883 35 H 0.098 0.902 36 H 0.138 0.862 37 H 0.107 0.893 38 H 0.191 0.809 39 H 0.093 0.907 40 H 0.103 0.897 41 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -10.824 -16.302 1.584 19.632 hybrid contribution 1.171 -0.004 0.000 1.171 sum -9.653 -16.306 1.584 19.015 Atomic orbital electron populations 1.23251 0.76110 1.03500 1.02833 1.86584 1.23621 1.32975 1.85226 1.19774 0.86942 0.81580 0.73277 1.90923 1.65373 1.35706 1.46268 1.19284 0.86468 0.87674 1.22363 1.21835 0.90221 0.98206 1.01681 1.16986 0.88424 0.88919 1.08144 1.43008 1.06931 1.05741 1.74586 1.18662 0.89735 0.80482 0.74350 1.90580 1.25392 1.76004 1.51581 1.18774 0.90885 0.93000 1.26134 1.20370 0.97732 0.91832 0.93876 1.20721 0.92527 0.97864 1.14629 1.17805 0.91939 0.92504 0.85192 1.19877 0.93336 1.00598 1.32986 0.89609 1.26114 1.01474 0.94714 0.92456 1.69750 1.28816 1.20978 1.19775 0.86185 0.79926 0.80904 0.79209 1.18980 1.19981 1.18203 1.20953 0.97680 0.93382 1.07654 1.20461 0.92360 0.97064 0.98287 1.21355 0.87396 0.93188 1.13130 1.43612 1.05027 1.06043 1.55132 1.22197 1.03049 0.77807 1.03696 0.88147 0.91773 0.91768 0.80547 0.75633 0.87903 0.88280 0.90198 0.86237 0.89292 0.80946 0.90685 0.89703 0.88557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.28 10.57 101.05 1.07 1.35 16 2 O -0.37 -3.94 7.98 -41.05 -0.33 -4.26 16 3 C 0.54 7.82 7.92 34.05 0.27 8.09 16 4 O -0.50 -8.64 16.68 -19.36 -0.32 -8.96 16 5 C -0.05 -0.72 6.88 -82.02 -0.56 -1.29 16 6 C -0.09 -1.62 9.43 -38.94 -0.37 -1.98 16 7 C 0.08 1.23 6.91 -83.91 -0.58 0.65 16 8 N -0.66 -11.29 5.41 -10.96 -0.06 -11.35 16 9 C 0.57 12.15 7.73 -12.44 -0.10 12.06 16 10 O -0.55 -13.10 13.49 5.26 0.07 -13.03 16 11 C -0.28 -6.36 5.89 -104.73 -0.62 -6.98 16 12 C -0.02 -0.44 9.52 -39.61 -0.38 -0.82 16 13 C -0.24 -5.69 9.73 -39.27 -0.38 -6.07 16 14 C 0.13 3.23 5.57 -106.80 -0.59 2.63 16 15 C -0.44 -10.78 9.04 -37.76 -0.34 -11.12 16 16 H 0.09 2.01 7.91 -52.49 -0.42 1.60 16 17 C 0.07 1.69 5.13 -17.31 -0.09 1.61 16 18 N -0.77 -18.11 10.99 55.56 0.61 -17.50 16 19 Si 0.91 17.00 29.60 -169.99 -5.03 11.97 16 20 H -0.26 -4.87 7.11 56.52 0.40 -4.47 16 21 H -0.27 -5.01 7.11 56.52 0.40 -4.61 16 22 H -0.26 -4.79 7.11 56.52 0.40 -4.39 16 23 C -0.18 -4.24 8.63 -39.27 -0.34 -4.58 16 24 C -0.06 -1.34 9.47 -39.61 -0.38 -1.72 16 25 C -0.01 -0.17 11.42 -16.60 -0.19 -0.36 16 26 N -0.42 -4.93 3.17 -120.03 -0.38 -5.31 16 27 C 0.07 0.52 10.56 59.85 0.63 1.15 16 28 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.18 3.66 5.97 -52.48 -0.31 3.35 16 32 H 0.41 5.86 6.83 -40.82 -0.28 5.58 16 33 H 0.10 2.32 7.63 -52.48 -0.40 1.92 16 34 H 0.10 2.21 8.06 -52.49 -0.42 1.79 16 35 H 0.29 6.05 8.29 -40.82 -0.34 5.71 16 36 H 0.12 2.88 6.20 -52.48 -0.33 2.56 16 37 H 0.09 1.58 6.37 -52.49 -0.33 1.24 16 38 H 0.17 1.42 8.06 -52.49 -0.42 1.00 16 39 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.10 0.67 6.14 -51.93 -0.32 0.35 16 LS Contribution 355.18 15.07 5.35 5.35 Total: -1.00 -31.17 355.18 -7.51 -38.68 By element: Atomic # 1 Polarization: 16.27 SS G_CDS: -4.48 Total: 11.79 kcal Atomic # 6 Polarization: -4.44 SS G_CDS: -2.94 Total: -7.38 kcal Atomic # 7 Polarization: -34.33 SS G_CDS: 0.17 Total: -34.16 kcal Atomic # 8 Polarization: -25.67 SS G_CDS: -0.58 Total: -26.25 kcal Atomic # 14 Polarization: 17.00 SS G_CDS: -5.03 Total: 11.97 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -31.17 -7.51 -38.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340200209.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.925 kcal (2) G-P(sol) polarization free energy of solvation -31.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.60 seconds