Wall clock time and date at job start Tue Mar 31 2020 16:56:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34902 * 117.00287 * 2 1 4 4 O 1.21623 * 119.99519 * 359.97438 * 3 2 1 5 5 C 1.46472 * 119.99879 * 180.02562 * 3 2 1 6 6 C 1.37994 * 126.16958 * 179.97438 * 5 3 2 7 7 C 1.40181 * 107.09758 * 180.02562 * 6 5 3 8 8 N 1.40582 * 126.12620 * 179.97438 * 7 6 5 9 9 C 1.34776 * 120.00018 * 0.02928 * 8 7 6 10 10 O 1.21624 * 119.99899 * 359.97438 * 9 8 7 11 11 C 1.47595 * 119.99921 * 179.97438 * 9 8 7 12 12 C 1.40034 * 119.89740 * 179.97438 * 11 9 8 13 13 C 1.36299 * 120.11074 * 179.70226 * 12 11 9 14 14 C 1.40900 * 119.89072 * 0.27314 * 13 12 11 15 15 C 1.41085 * 120.10318 * 180.02562 * 14 13 12 16 16 H 1.07998 * 120.00194 * 25.06736 * 15 14 13 17 17 C 1.40227 * 120.00312 * 205.06586 * 15 14 13 18 18 N 1.30650 * 119.99443 * 18.03418 * 17 15 14 19 19 Si 1.86794 * 120.00323 * 198.03692 * 17 15 14 20 20 H 1.48504 * 109.47346 * 94.52683 * 19 17 15 21 21 H 1.48497 * 109.47255 * 214.52788 * 19 17 15 22 22 H 1.48499 * 109.47093 * 334.52728 * 19 17 15 23 23 C 1.40897 * 119.79330 * 0.02562 * 14 13 12 24 24 C 1.36306 * 119.89653 * 359.97438 * 23 14 13 25 25 C 1.36005 * 107.74984 * 0.22442 * 7 6 5 26 26 N 1.35786 * 108.78400 * 359.63001 * 25 7 6 27 27 C 1.46504 * 125.64280 * 180.12416 * 26 25 7 28 28 H 1.08994 * 109.46970 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.46952 * 300.00082 * 1 2 3 30 30 H 1.08993 * 109.46767 * 60.00035 * 1 2 3 31 31 H 1.08003 * 126.45188 * 0.02562 * 6 5 3 32 32 H 0.96999 * 119.99951 * 180.02562 * 8 7 6 33 33 H 1.08009 * 119.94571 * 359.97438 * 12 11 9 34 34 H 1.07997 * 120.05544 * 180.29886 * 13 12 11 35 35 H 0.97005 * 119.99668 * 179.97438 * 18 17 15 36 36 H 1.08003 * 120.05449 * 180.02562 * 23 14 13 37 37 H 1.07999 * 119.94419 * 180.02562 * 24 23 14 38 38 H 1.08002 * 125.60723 * 179.77094 * 25 7 6 39 39 H 1.09003 * 109.46847 * 270.29051 * 27 26 25 40 40 H 1.09001 * 109.47192 * 30.29138 * 27 26 25 41 41 H 1.08999 * 109.47082 * 150.29390 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0646 1.2020 0.0000 4 8 1.4021 2.2220 -0.0005 5 6 3.5273 1.2785 -0.0006 6 6 4.2824 2.4335 -0.0011 7 6 5.6293 2.0454 -0.0021 8 7 6.7402 2.9070 -0.0035 9 6 6.5573 4.2423 -0.0033 10 8 5.4313 4.7018 -0.0024 11 6 7.7236 5.1468 -0.0041 12 6 7.5312 6.5339 -0.0045 13 6 8.6051 7.3732 0.0009 14 6 9.9105 6.8431 0.0009 15 6 11.0254 7.7078 0.0070 16 1 10.9321 8.7064 0.4077 17 6 12.2546 7.2707 -0.5071 18 7 12.2996 6.2307 -1.2967 19 14 13.8275 8.1752 -0.0631 20 1 14.4692 7.5109 1.0997 21 1 14.7562 8.1511 -1.2215 22 1 13.5075 9.5828 0.2855 23 6 10.0992 5.4469 -0.0051 24 6 9.0191 4.6154 -0.0104 25 6 5.6691 0.6859 -0.0072 26 7 4.3969 0.2113 -0.0012 27 6 4.0131 -1.2026 -0.0013 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3632 0.5138 -0.8899 31 1 3.9063 3.4460 -0.0008 32 1 7.6383 2.5404 -0.0045 33 1 6.5301 6.9393 -0.0046 34 1 8.4556 8.4428 0.0055 35 1 13.1499 5.9286 -1.6526 36 1 11.0980 5.0360 -0.0046 37 1 9.1629 3.5450 -0.0146 38 1 6.5651 0.0830 -0.0127 39 1 3.9175 -1.5530 -1.0290 40 1 4.7771 -1.7865 0.5121 41 1 3.0593 -1.3202 0.5129 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340200209.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:56:56 Heat of formation + Delta-G solvation = -66.809574 kcal Electronic energy + Delta-G solvation = -26176.625528 eV Core-core repulsion = 22214.635060 eV Total energy + Delta-G solvation = -3961.990468 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.64138 -41.14975 -40.49272 -38.88904 -37.58355 -35.87787 -35.67046 -33.21605 -31.88591 -31.30253 -30.71990 -28.44444 -27.97117 -26.79048 -24.66477 -23.74374 -22.84376 -21.94539 -21.38131 -20.59507 -19.45600 -19.28873 -18.20435 -17.89393 -17.59418 -17.21645 -16.56912 -16.45206 -16.28730 -15.73475 -15.60965 -15.56771 -15.07339 -14.85396 -14.45742 -14.35141 -14.24598 -13.88323 -13.70072 -13.47046 -13.39543 -13.23607 -13.16577 -12.87437 -12.83219 -12.61010 -12.36433 -11.92373 -11.89490 -11.74028 -11.59374 -11.35386 -11.11841 -10.60735 -9.61121 -9.56291 -9.44736 -8.79824 -8.65765 -6.47107 0.06633 0.39163 1.16523 1.34785 1.41938 1.49550 1.54996 1.56046 1.72023 1.95095 2.17908 2.32771 2.45960 2.83093 3.68224 3.70449 3.94101 4.08961 4.24930 4.28499 4.31503 4.32632 4.42955 4.45563 4.52405 4.66757 4.71588 4.87342 4.91060 4.94170 5.04747 5.14157 5.17539 5.25820 5.30961 5.59648 5.62466 5.81896 5.91948 5.98550 6.00417 6.21146 6.23901 6.54675 6.60786 6.73076 6.77919 6.89825 7.44580 8.16538 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.033340 B = 0.002150 C = 0.002033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.632217 B =13021.870024 C =13768.197009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.352 6.352 3 C 0.542 3.458 4 O -0.538 6.538 5 C -0.060 4.060 6 C -0.131 4.131 7 C 0.033 3.967 8 N -0.640 5.640 9 C 0.568 3.432 10 O -0.588 6.588 11 C -0.290 4.290 12 C -0.033 4.033 13 C -0.253 4.253 14 C 0.101 3.899 15 C -0.472 4.472 16 H 0.084 0.916 17 C 0.039 3.961 18 N -0.796 5.796 19 Si 0.988 3.012 20 H -0.258 1.258 21 H -0.265 1.265 22 H -0.259 1.259 23 C -0.196 4.196 24 C -0.051 4.051 25 C 0.032 3.968 26 N -0.403 5.403 27 C 0.063 3.937 28 H 0.144 0.856 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.134 0.866 32 H 0.422 0.578 33 H 0.100 0.900 34 H 0.103 0.897 35 H 0.298 0.702 36 H 0.116 0.884 37 H 0.131 0.869 38 H 0.226 0.774 39 H 0.094 0.906 40 H 0.121 0.879 41 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.586 -20.448 1.847 22.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.268 6.268 3 C 0.389 3.611 4 O -0.428 6.428 5 C -0.171 4.171 6 C -0.160 4.160 7 C -0.066 4.066 8 N -0.285 5.285 9 C 0.363 3.637 10 O -0.471 6.471 11 C -0.294 4.294 12 C -0.052 4.052 13 C -0.273 4.273 14 C 0.098 3.902 15 C -0.499 4.499 16 H 0.102 0.898 17 C -0.181 4.181 18 N -0.419 5.419 19 Si 0.808 3.192 20 H -0.182 1.182 21 H -0.189 1.189 22 H -0.183 1.183 23 C -0.215 4.215 24 C -0.070 4.070 25 C -0.107 4.107 26 N -0.078 5.078 27 C -0.076 4.076 28 H 0.162 0.838 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.151 0.849 32 H 0.261 0.739 33 H 0.118 0.882 34 H 0.121 0.879 35 H 0.109 0.891 36 H 0.134 0.866 37 H 0.149 0.851 38 H 0.243 0.757 39 H 0.112 0.888 40 H 0.140 0.860 41 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -9.582 -20.388 1.686 22.590 hybrid contribution 0.605 1.024 -0.058 1.191 sum -8.977 -19.364 1.627 21.406 Atomic orbital electron populations 1.23629 0.74102 1.06207 1.02520 1.86576 1.25429 1.30496 1.84326 1.19796 0.86898 0.82019 0.72374 1.90900 1.66218 1.37350 1.48366 1.19110 0.87044 0.88059 1.22892 1.21543 0.92176 0.97607 1.04663 1.17192 0.87183 0.90586 1.11668 1.42608 1.08171 1.04403 1.73281 1.18514 0.88700 0.81958 0.74568 1.90594 1.26364 1.77033 1.53145 1.19029 0.92020 0.92971 1.25397 1.20502 0.97497 0.92814 0.94372 1.20839 0.92680 0.98262 1.15473 1.18158 0.92449 0.93598 0.85979 1.20113 0.94545 1.00849 1.34373 0.89789 1.26913 1.04017 0.95479 0.91680 1.69760 1.30298 1.21917 1.19907 0.85094 0.75601 0.79343 0.79202 1.18213 1.18920 1.18316 1.21007 0.98174 0.93267 1.09088 1.20752 0.91040 0.99004 0.96187 1.22029 0.88828 0.91698 1.08156 1.44014 1.04358 1.07279 1.52110 1.22652 1.04519 0.74871 1.05551 0.83801 0.92140 0.92206 0.84870 0.73896 0.88190 0.87933 0.89090 0.86593 0.85146 0.75719 0.88793 0.86028 0.88371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 10.57 113.37 1.20 1.57 16 2 O -0.35 -6.91 7.98 -58.17 -0.46 -7.37 16 3 C 0.54 15.78 7.92 69.97 0.55 16.33 16 4 O -0.54 -19.72 16.68 19.43 0.32 -19.40 16 5 C -0.06 -1.77 6.88 40.32 0.28 -1.49 16 6 C -0.13 -4.85 9.43 22.68 0.21 -4.63 16 7 C 0.03 1.02 6.91 37.69 0.26 1.28 16 8 N -0.64 -21.34 5.41 -306.82 -1.66 -23.00 16 9 C 0.57 24.73 7.73 86.71 0.67 25.40 16 10 O -0.59 -29.48 13.49 -4.11 -0.06 -29.53 16 11 C -0.29 -13.27 5.89 -19.94 -0.12 -13.39 16 12 C -0.03 -1.60 9.52 22.25 0.21 -1.38 16 13 C -0.25 -12.70 9.73 22.47 0.22 -12.48 16 14 C 0.10 5.25 5.57 -21.28 -0.12 5.13 16 15 C -0.47 -23.70 9.04 23.45 0.21 -23.48 16 16 H 0.08 4.08 7.91 -2.91 -0.02 4.06 16 17 C 0.04 1.76 5.13 85.35 0.44 2.20 16 18 N -0.80 -37.32 10.99 21.87 0.24 -37.08 16 19 Si 0.99 34.38 29.60 68.60 2.03 36.41 16 20 H -0.26 -8.63 7.11 99.48 0.71 -7.92 16 21 H -0.26 -8.73 7.11 99.48 0.71 -8.02 16 22 H -0.26 -8.99 7.11 99.48 0.71 -8.28 16 23 C -0.20 -9.48 8.63 22.47 0.19 -9.29 16 24 C -0.05 -2.17 9.47 22.25 0.21 -1.96 16 25 C 0.03 0.65 11.42 83.56 0.95 1.60 16 26 N -0.40 -8.04 3.17 -533.67 -1.69 -9.73 16 27 C 0.06 0.57 10.56 127.77 1.35 1.92 16 28 H 0.14 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.13 6.10 5.97 -2.91 -0.02 6.08 16 32 H 0.42 11.02 6.83 -92.71 -0.63 10.39 16 33 H 0.10 4.83 7.63 -2.91 -0.02 4.81 16 34 H 0.10 4.87 8.06 -2.91 -0.02 4.85 16 35 H 0.30 12.33 8.29 -92.70 -0.77 11.56 16 36 H 0.12 5.63 6.20 -2.91 -0.02 5.61 16 37 H 0.13 4.31 6.37 -2.91 -0.02 4.29 16 38 H 0.23 2.11 8.06 -2.91 -0.02 2.09 16 39 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 40 H 0.12 0.33 8.14 -2.39 -0.02 0.31 16 41 H 0.10 0.94 6.14 -2.39 -0.01 0.92 16 Total: -1.00 -74.57 355.18 5.91 -68.65 By element: Atomic # 1 Polarization: 33.26 SS G_CDS: 0.46 Total: 33.72 kcal Atomic # 6 Polarization: -19.40 SS G_CDS: 6.73 Total: -12.67 kcal Atomic # 7 Polarization: -66.70 SS G_CDS: -3.11 Total: -69.81 kcal Atomic # 8 Polarization: -56.11 SS G_CDS: -0.20 Total: -56.31 kcal Atomic # 14 Polarization: 34.38 SS G_CDS: 2.03 Total: 36.41 kcal Total: -74.57 5.91 -68.65 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340200209.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.845 kcal (2) G-P(sol) polarization free energy of solvation -74.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds