Wall clock time and date at job start Tue Mar 31 2020 15:22:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50701 * 120.00371 * 2 1 4 4 N 1.46489 * 109.47409 * 124.99937 * 3 2 1 5 5 C 1.46507 * 119.99911 * 274.64205 * 4 3 2 6 6 C 1.50697 * 109.46639 * 269.99844 * 5 4 3 7 7 H 1.08001 * 120.00756 * 0.02562 * 6 5 4 8 8 C 1.37881 * 119.99886 * 180.02562 * 6 5 4 9 9 N 1.31509 * 120.00521 * 180.02562 * 8 6 5 10 10 Si 1.86800 * 119.99690 * 0.02562 * 8 6 5 11 11 H 1.48496 * 109.47368 * 90.00067 * 10 8 6 12 12 H 1.48500 * 109.47027 * 209.99833 * 10 8 6 13 13 H 1.48504 * 109.47464 * 329.99673 * 10 8 6 14 14 C 1.34784 * 120.00222 * 94.63928 * 4 3 2 15 15 O 1.21626 * 119.99767 * 4.98231 * 14 4 3 16 16 C 1.47258 * 119.99755 * 184.97848 * 14 4 3 17 17 C 1.40287 * 120.47247 * 303.85182 * 16 14 4 18 18 C 1.36850 * 118.59059 * 179.97438 * 17 16 14 19 19 C 1.39850 * 119.48427 * 359.97438 * 18 17 16 20 20 C 1.47405 * 119.54172 * 179.97438 * 19 18 17 21 21 C 1.36196 * 125.95496 * 179.71726 * 20 19 18 22 22 C 1.40692 * 106.73098 * 179.91183 * 21 20 19 23 23 C 1.34911 * 107.06192 * 0.35506 * 22 21 20 24 24 O 1.34165 * 108.70770 * 359.77998 * 23 22 21 25 25 N 1.33037 * 120.91786 * 359.97438 * 19 18 17 26 26 C 1.32038 * 121.52034 * 0.02562 * 25 19 18 27 27 O 1.35433 * 119.79089 * 179.97438 * 26 25 19 28 28 H 1.07994 * 120.00268 * 180.02562 * 1 2 3 29 29 H 1.08006 * 119.99914 * 0.02562 * 1 2 3 30 30 H 1.08002 * 119.99843 * 179.97438 * 2 1 3 31 31 H 1.09003 * 109.47067 * 4.99596 * 3 2 1 32 32 H 1.08999 * 109.46761 * 245.00248 * 3 2 1 33 33 H 1.08992 * 109.46916 * 29.99859 * 5 4 3 34 34 H 1.09003 * 109.47123 * 150.00477 * 5 4 3 35 35 H 0.96997 * 120.00791 * 180.02562 * 9 8 6 36 36 H 1.07998 * 120.69905 * 0.25284 * 17 16 14 37 37 H 1.08003 * 120.25396 * 180.02562 * 18 17 16 38 38 H 1.08007 * 126.63686 * 0.02562 * 21 20 19 39 39 H 1.08000 * 126.47093 * 180.13464 * 22 21 20 40 40 H 1.07997 * 125.64481 * 179.74043 * 23 22 21 41 41 H 0.96697 * 113.99632 * 89.99883 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9938 1.3319 1.1313 5 6 2.5304 1.7696 2.4504 6 6 2.7232 3.2585 2.5818 7 1 3.1479 3.8223 1.7645 8 6 2.3573 3.9009 3.7457 9 7 2.5250 5.2002 3.8603 10 14 1.6233 2.9256 5.1597 11 1 2.7114 2.4558 6.0544 12 1 0.6910 3.7907 5.9264 13 1 0.8839 1.7551 4.6226 14 6 4.2759 0.9537 0.9588 15 8 4.6839 0.6772 -0.1531 16 6 5.1826 0.8756 2.1164 17 6 5.3839 1.9938 2.9393 18 6 6.2345 1.8781 4.0050 19 6 6.8754 0.6584 4.2450 20 6 7.7922 0.5325 5.3923 21 6 8.4775 -0.5891 5.7489 22 6 9.2265 -0.2594 6.8934 23 6 8.9598 1.0311 7.1827 24 8 8.0938 1.5056 6.2745 25 7 6.6690 -0.3897 3.4521 26 6 5.8565 -0.3204 2.4136 27 8 5.6726 -1.4091 1.6293 28 1 -0.5400 -0.9352 0.0004 29 1 -0.5400 0.9354 -0.0004 30 1 1.8500 -0.9353 0.0004 31 1 1.3587 2.1317 0.0895 32 1 2.6213 1.4025 -0.9314 33 1 1.4733 1.5288 2.5625 34 1 3.1035 1.2594 3.2246 35 1 2.2679 5.6521 4.6791 36 1 4.8748 2.9249 2.7384 37 1 6.4088 2.7219 4.6563 38 1 8.4525 -1.5461 5.2488 39 1 9.8871 -0.9164 7.4395 40 1 9.3743 1.5894 8.0090 41 1 4.9447 -1.9792 1.9124 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359436852.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:22:02 Heat of formation + Delta-G solvation = 13.103991 kcal Electronic energy + Delta-G solvation = -27759.595613 eV Core-core repulsion = 23801.070457 eV Total energy + Delta-G solvation = -3958.525156 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.58595 -40.54785 -38.76609 -37.01941 -35.63338 -33.90731 -33.17344 -32.48891 -32.08669 -31.21264 -28.71256 -28.32939 -25.99839 -24.07976 -23.31975 -22.61533 -21.44015 -20.90578 -20.07370 -19.03832 -18.67818 -17.59964 -17.19275 -16.72323 -16.49164 -16.17297 -15.94166 -15.54083 -14.86986 -14.63724 -14.48527 -14.19196 -13.51016 -13.39533 -13.08603 -12.92546 -12.87978 -12.78717 -12.64577 -12.40039 -12.12589 -11.85455 -11.62348 -11.60129 -11.27205 -11.03415 -10.83846 -10.39861 -10.06049 -9.90884 -9.69576 -9.63045 -9.36765 -9.28262 -9.00293 -8.87412 -8.00687 -7.91694 -6.39076 -4.41520 0.50996 1.40251 1.91440 2.39496 2.58566 2.60032 3.07547 3.15921 3.18175 3.19429 3.64337 3.82575 4.03070 4.12989 4.45272 4.88177 4.92052 4.95930 4.96600 5.07097 5.21613 5.29384 5.40120 5.48474 5.65564 5.71036 5.83596 5.85258 5.94226 6.06164 6.20620 6.28928 6.34336 6.40750 6.47937 6.52928 6.77744 6.78603 6.86636 7.00688 7.19991 7.27582 7.57996 7.87628 7.93809 8.22058 8.62231 8.72080 9.19416 10.71799 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.010929 B = 0.004791 C = 0.003684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2561.401324 B = 5842.486012 C = 7599.313476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.159 4.159 3 C 0.142 3.858 4 N -0.581 5.581 5 C 0.206 3.794 6 C -0.549 4.549 7 H 0.084 0.916 8 C 0.084 3.916 9 N -0.880 5.880 10 Si 0.862 3.138 11 H -0.270 1.270 12 H -0.281 1.281 13 H -0.263 1.263 14 C 0.569 3.431 15 O -0.544 6.544 16 C -0.179 4.179 17 C -0.009 4.009 18 C -0.166 4.166 19 C 0.225 3.775 20 C 0.022 3.978 21 C -0.154 4.154 22 C -0.221 4.221 23 C -0.026 4.026 24 O -0.164 6.164 25 N -0.497 5.497 26 C 0.351 3.649 27 O -0.466 6.466 28 H 0.094 0.906 29 H 0.099 0.901 30 H 0.105 0.895 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.038 0.962 34 H 0.028 0.972 35 H 0.270 0.730 36 H 0.188 0.812 37 H 0.147 0.853 38 H 0.157 0.843 39 H 0.151 0.849 40 H 0.207 0.793 41 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.074 -9.406 4.560 11.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.178 4.178 3 C 0.019 3.981 4 N -0.311 5.311 5 C 0.084 3.916 6 C -0.587 4.587 7 H 0.102 0.898 8 C -0.121 4.121 9 N -0.517 5.517 10 Si 0.688 3.312 11 H -0.195 1.195 12 H -0.206 1.206 13 H -0.188 1.188 14 C 0.356 3.644 15 O -0.422 6.422 16 C -0.185 4.185 17 C -0.034 4.034 18 C -0.186 4.186 19 C 0.089 3.911 20 C -0.028 4.028 21 C -0.175 4.175 22 C -0.240 4.240 23 C -0.095 4.095 24 O -0.059 6.059 25 N -0.218 5.218 26 C 0.171 3.829 27 O -0.271 6.271 28 H 0.112 0.888 29 H 0.117 0.883 30 H 0.123 0.877 31 H 0.105 0.895 32 H 0.107 0.893 33 H 0.056 0.944 34 H 0.046 0.954 35 H 0.080 0.920 36 H 0.204 0.796 37 H 0.164 0.836 38 H 0.174 0.826 39 H 0.169 0.831 40 H 0.224 0.776 41 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges 5.969 -9.655 3.883 11.997 hybrid contribution -1.149 -0.054 1.217 1.674 sum 4.820 -9.709 5.099 11.979 Atomic orbital electron populations 1.23810 0.95774 1.01729 1.01423 1.23380 0.96118 0.99209 0.99119 1.20490 0.92200 0.94926 0.90476 1.47834 1.08283 1.63154 1.11816 1.19888 0.95918 0.96312 0.79445 1.21340 1.44046 0.90641 1.02686 0.89837 1.24826 0.94514 0.94666 0.98115 1.69869 1.46032 1.08129 1.27623 0.87039 0.80270 0.80752 0.83115 1.19508 1.20601 1.18764 1.17753 0.81864 0.77198 0.87618 1.90754 1.75963 1.50649 1.24875 1.21085 1.01712 0.96137 0.99612 1.22464 0.91119 1.00440 0.89354 1.21857 0.98683 0.98079 0.99978 1.17983 0.93333 0.89350 0.90448 1.19749 1.02214 0.87478 0.93367 1.21914 0.98391 0.99431 0.97729 1.21826 1.05346 0.96653 1.00210 1.24229 0.94747 0.95512 0.95034 1.84050 1.50593 1.38362 1.32866 1.66827 1.18364 1.31500 1.05075 1.18708 0.90503 0.86625 0.87066 1.84797 1.56928 1.36033 1.49392 0.88787 0.88286 0.87742 0.89481 0.89269 0.94433 0.95439 0.92032 0.79569 0.83566 0.82565 0.83093 0.77649 0.74590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.45 14.32 29.02 0.42 -2.04 16 2 C -0.16 -2.36 9.84 -36.02 -0.35 -2.72 16 3 C 0.14 2.44 5.93 -5.20 -0.03 2.41 16 4 N -0.58 -11.41 2.44 -177.77 -0.43 -11.84 16 5 C 0.21 4.30 3.80 -5.19 -0.02 4.28 16 6 C -0.55 -13.18 7.11 -34.44 -0.24 -13.43 16 7 H 0.08 2.24 8.02 -52.49 -0.42 1.82 16 8 C 0.08 2.10 5.47 -17.82 -0.10 2.00 16 9 N -0.88 -23.64 13.96 55.43 0.77 -22.87 16 10 Si 0.86 18.85 27.47 -169.99 -4.67 14.18 16 11 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 12 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 13 H -0.26 -5.53 6.54 56.52 0.37 -5.16 16 14 C 0.57 11.69 6.79 -12.59 -0.09 11.61 16 15 O -0.54 -12.32 16.34 4.27 0.07 -12.25 16 16 C -0.18 -3.48 4.66 -104.63 -0.49 -3.97 16 17 C -0.01 -0.17 7.86 -39.31 -0.31 -0.48 16 18 C -0.17 -2.92 9.67 -39.48 -0.38 -3.30 16 19 C 0.23 3.88 6.74 -83.01 -0.56 3.32 16 20 C 0.02 0.34 7.03 -36.59 -0.26 0.09 16 21 C -0.15 -2.07 10.57 -39.39 -0.42 -2.49 16 22 C -0.22 -2.38 10.88 -39.84 -0.43 -2.81 16 23 C -0.03 -0.27 12.08 29.55 0.36 0.08 16 24 O -0.16 -2.31 10.36 4.79 0.05 -2.26 16 25 N -0.50 -8.82 10.05 -9.61 -0.10 -8.91 16 26 C 0.35 6.39 7.76 -16.63 -0.13 6.26 16 27 O -0.47 -7.64 12.82 -18.97 -0.24 -7.89 16 28 H 0.09 1.04 8.06 -52.49 -0.42 0.62 16 29 H 0.10 1.24 7.84 -52.48 -0.41 0.83 16 30 H 0.10 1.52 8.06 -52.49 -0.42 1.10 16 31 H 0.09 1.48 7.76 -51.93 -0.40 1.08 16 32 H 0.09 1.57 7.23 -51.93 -0.38 1.20 16 33 H 0.04 0.79 7.13 -51.93 -0.37 0.42 16 34 H 0.03 0.58 5.56 -51.93 -0.29 0.29 16 35 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 36 H 0.19 3.94 5.22 -52.49 -0.27 3.67 16 37 H 0.15 2.36 7.87 -52.48 -0.41 1.95 16 38 H 0.16 2.00 8.06 -52.48 -0.42 1.58 16 39 H 0.15 1.18 8.06 -52.49 -0.42 0.76 16 40 H 0.21 1.24 8.06 -52.49 -0.42 0.81 16 41 H 0.40 4.49 9.06 45.56 0.41 4.91 16 LS Contribution 359.00 15.07 5.41 5.41 Total: -1.00 -30.50 359.00 -6.00 -36.50 By element: Atomic # 1 Polarization: 14.94 SS G_CDS: -3.83 Total: 11.11 kcal Atomic # 6 Polarization: 1.86 SS G_CDS: -3.03 Total: -1.18 kcal Atomic # 7 Polarization: -43.86 SS G_CDS: 0.24 Total: -43.62 kcal Atomic # 8 Polarization: -22.28 SS G_CDS: -0.12 Total: -22.40 kcal Atomic # 14 Polarization: 18.85 SS G_CDS: -4.67 Total: 14.18 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -30.50 -6.00 -36.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359436852.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.608 kcal (2) G-P(sol) polarization free energy of solvation -30.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.504 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds