Wall clock time and date at job start Tue Mar 31 2020 15:22:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50701 * 120.00371 * 2 1 4 4 N 1.46489 * 109.47409 * 124.99937 * 3 2 1 5 5 C 1.46507 * 119.99911 * 274.64205 * 4 3 2 6 6 C 1.50697 * 109.46639 * 269.99844 * 5 4 3 7 7 H 1.08001 * 120.00756 * 0.02562 * 6 5 4 8 8 C 1.37881 * 119.99886 * 180.02562 * 6 5 4 9 9 N 1.31509 * 120.00521 * 180.02562 * 8 6 5 10 10 Si 1.86800 * 119.99690 * 0.02562 * 8 6 5 11 11 H 1.48496 * 109.47368 * 90.00067 * 10 8 6 12 12 H 1.48500 * 109.47027 * 209.99833 * 10 8 6 13 13 H 1.48504 * 109.47464 * 329.99673 * 10 8 6 14 14 C 1.34784 * 120.00222 * 94.63928 * 4 3 2 15 15 O 1.21626 * 119.99767 * 4.98231 * 14 4 3 16 16 C 1.47258 * 119.99755 * 184.97848 * 14 4 3 17 17 C 1.40287 * 120.47247 * 303.85182 * 16 14 4 18 18 C 1.36850 * 118.59059 * 179.97438 * 17 16 14 19 19 C 1.39850 * 119.48427 * 359.97438 * 18 17 16 20 20 C 1.47405 * 119.54172 * 179.97438 * 19 18 17 21 21 C 1.36196 * 125.95496 * 179.71726 * 20 19 18 22 22 C 1.40692 * 106.73098 * 179.91183 * 21 20 19 23 23 C 1.34911 * 107.06192 * 0.35506 * 22 21 20 24 24 O 1.34165 * 108.70770 * 359.77998 * 23 22 21 25 25 N 1.33037 * 120.91786 * 359.97438 * 19 18 17 26 26 C 1.32038 * 121.52034 * 0.02562 * 25 19 18 27 27 O 1.35433 * 119.79089 * 179.97438 * 26 25 19 28 28 H 1.07994 * 120.00268 * 180.02562 * 1 2 3 29 29 H 1.08006 * 119.99914 * 0.02562 * 1 2 3 30 30 H 1.08002 * 119.99843 * 179.97438 * 2 1 3 31 31 H 1.09003 * 109.47067 * 4.99596 * 3 2 1 32 32 H 1.08999 * 109.46761 * 245.00248 * 3 2 1 33 33 H 1.08992 * 109.46916 * 29.99859 * 5 4 3 34 34 H 1.09003 * 109.47123 * 150.00477 * 5 4 3 35 35 H 0.96997 * 120.00791 * 180.02562 * 9 8 6 36 36 H 1.07998 * 120.69905 * 0.25284 * 17 16 14 37 37 H 1.08003 * 120.25396 * 180.02562 * 18 17 16 38 38 H 1.08007 * 126.63686 * 0.02562 * 21 20 19 39 39 H 1.08000 * 126.47093 * 180.13464 * 22 21 20 40 40 H 1.07997 * 125.64481 * 179.74043 * 23 22 21 41 41 H 0.96697 * 113.99632 * 89.99883 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9938 1.3319 1.1313 5 6 2.5304 1.7696 2.4504 6 6 2.7232 3.2585 2.5818 7 1 3.1479 3.8223 1.7645 8 6 2.3573 3.9009 3.7457 9 7 2.5250 5.2002 3.8603 10 14 1.6233 2.9256 5.1597 11 1 2.7114 2.4558 6.0544 12 1 0.6910 3.7907 5.9264 13 1 0.8839 1.7551 4.6226 14 6 4.2759 0.9537 0.9588 15 8 4.6839 0.6772 -0.1531 16 6 5.1826 0.8756 2.1164 17 6 5.3839 1.9938 2.9393 18 6 6.2345 1.8781 4.0050 19 6 6.8754 0.6584 4.2450 20 6 7.7922 0.5325 5.3923 21 6 8.4775 -0.5891 5.7489 22 6 9.2265 -0.2594 6.8934 23 6 8.9598 1.0311 7.1827 24 8 8.0938 1.5056 6.2745 25 7 6.6690 -0.3897 3.4521 26 6 5.8565 -0.3204 2.4136 27 8 5.6726 -1.4091 1.6293 28 1 -0.5400 -0.9352 0.0004 29 1 -0.5400 0.9354 -0.0004 30 1 1.8500 -0.9353 0.0004 31 1 1.3587 2.1317 0.0895 32 1 2.6213 1.4025 -0.9314 33 1 1.4733 1.5288 2.5625 34 1 3.1035 1.2594 3.2246 35 1 2.2679 5.6521 4.6791 36 1 4.8748 2.9249 2.7384 37 1 6.4088 2.7219 4.6563 38 1 8.4525 -1.5461 5.2488 39 1 9.8871 -0.9164 7.4395 40 1 9.3743 1.5894 8.0090 41 1 4.9447 -1.9792 1.9124 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359436852.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:22:01 Heat of formation + Delta-G solvation = -8.640054 kcal Electronic energy + Delta-G solvation = -27760.538505 eV Core-core repulsion = 23801.070457 eV Total energy + Delta-G solvation = -3959.468048 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.56726 -41.98789 -40.28701 -38.35220 -37.20307 -35.37062 -34.43110 -34.02326 -33.39294 -32.47822 -30.09587 -29.88379 -27.35128 -25.43297 -24.75379 -24.28832 -22.43671 -22.01133 -21.35264 -20.44534 -19.93266 -19.07019 -18.72294 -18.30829 -17.90179 -17.49701 -17.12610 -16.70729 -16.38423 -16.01154 -15.85924 -15.72977 -14.97408 -14.78595 -14.51105 -14.41464 -14.18285 -13.91630 -13.85905 -13.57798 -13.55735 -13.34435 -13.11347 -12.91967 -12.79647 -12.58234 -12.33457 -12.00220 -11.74189 -11.34881 -11.15904 -10.94407 -10.80089 -10.69632 -10.50291 -10.30024 -9.58051 -9.11024 -8.33328 -6.39171 -0.80722 0.00720 0.81703 1.23630 1.35376 1.39342 1.45290 1.51917 1.55810 1.73166 2.24982 2.29911 2.47723 2.68736 2.99359 3.32858 3.45346 3.67335 3.88831 3.99828 4.06339 4.08166 4.17026 4.26254 4.35216 4.49972 4.63907 4.66952 4.75530 4.83526 4.94876 4.97954 5.00267 5.04727 5.12301 5.30600 5.39155 5.50183 5.52699 5.67748 5.86924 6.02486 6.11518 6.37036 6.47067 6.59080 6.64358 7.08806 7.25898 8.81109 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.010929 B = 0.004791 C = 0.003684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2561.401324 B = 5842.486012 C = 7599.313476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.181 4.181 3 C 0.138 3.862 4 N -0.581 5.581 5 C 0.217 3.783 6 C -0.538 4.538 7 H 0.042 0.958 8 C 0.040 3.960 9 N -0.927 5.927 10 Si 0.917 3.083 11 H -0.265 1.265 12 H -0.282 1.282 13 H -0.244 1.244 14 C 0.570 3.430 15 O -0.572 6.572 16 C -0.204 4.204 17 C -0.013 4.013 18 C -0.175 4.175 19 C 0.237 3.763 20 C -0.024 4.024 21 C -0.143 4.143 22 C -0.227 4.227 23 C -0.007 4.007 24 O -0.181 6.181 25 N -0.502 5.502 26 C 0.361 3.639 27 O -0.472 6.472 28 H 0.121 0.879 29 H 0.103 0.897 30 H 0.107 0.893 31 H 0.085 0.915 32 H 0.078 0.922 33 H 0.047 0.953 34 H 0.034 0.966 35 H 0.270 0.730 36 H 0.162 0.838 37 H 0.155 0.845 38 H 0.159 0.841 39 H 0.184 0.816 40 H 0.252 0.748 41 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.286 -11.687 6.898 14.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.200 4.200 3 C 0.016 3.984 4 N -0.310 5.310 5 C 0.096 3.904 6 C -0.576 4.576 7 H 0.061 0.939 8 C -0.161 4.161 9 N -0.565 5.565 10 Si 0.741 3.259 11 H -0.190 1.190 12 H -0.207 1.207 13 H -0.167 1.167 14 C 0.358 3.642 15 O -0.453 6.453 16 C -0.211 4.211 17 C -0.038 4.038 18 C -0.194 4.194 19 C 0.101 3.899 20 C -0.074 4.074 21 C -0.164 4.164 22 C -0.246 4.246 23 C -0.075 4.075 24 O -0.077 6.077 25 N -0.222 5.222 26 C 0.180 3.820 27 O -0.281 6.281 28 H 0.139 0.861 29 H 0.121 0.879 30 H 0.125 0.875 31 H 0.103 0.897 32 H 0.096 0.904 33 H 0.065 0.935 34 H 0.052 0.948 35 H 0.080 0.920 36 H 0.179 0.821 37 H 0.173 0.827 38 H 0.177 0.823 39 H 0.202 0.798 40 H 0.268 0.732 41 H 0.280 0.720 Dipole moment (debyes) X Y Z Total from point charges 6.146 -11.967 6.201 14.814 hybrid contribution -1.082 0.650 0.538 1.372 sum 5.064 -11.317 6.739 14.111 Atomic orbital electron populations 1.24067 0.94977 1.03214 0.97818 1.23159 0.96711 0.97730 1.02362 1.20600 0.91857 0.96690 0.89204 1.47885 1.08546 1.62544 1.12001 1.19675 0.96350 0.94065 0.80353 1.21338 1.42878 0.92044 1.01338 0.93938 1.25487 0.94935 0.95278 1.00446 1.69996 1.48008 1.09968 1.28520 0.86152 0.79706 0.79960 0.80127 1.18992 1.20741 1.16685 1.17929 0.82077 0.76649 0.87590 1.90721 1.76426 1.52194 1.25957 1.21014 1.03064 0.96984 0.99995 1.22136 0.91923 0.99425 0.90316 1.21896 0.98855 0.98937 0.99754 1.18283 0.92474 0.88654 0.90536 1.19587 1.04415 0.88879 0.94474 1.22198 0.97297 0.98799 0.98058 1.22215 1.05547 0.97357 0.99472 1.25276 0.92144 0.95856 0.94209 1.84050 1.51623 1.38608 1.33394 1.66960 1.18517 1.31576 1.05188 1.18721 0.89778 0.86639 0.86863 1.84736 1.58077 1.35819 1.49466 0.86100 0.87860 0.87486 0.89698 0.90395 0.93473 0.94812 0.92017 0.82125 0.82744 0.82316 0.79831 0.73185 0.72028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.81 14.32 67.78 0.97 -2.84 16 2 C -0.18 -5.17 9.84 25.65 0.25 -4.92 16 3 C 0.14 4.86 5.93 85.64 0.51 5.37 16 4 N -0.58 -23.34 2.44 -834.58 -2.04 -25.37 16 5 C 0.22 9.13 3.80 85.63 0.33 9.46 16 6 C -0.54 -26.72 7.11 25.60 0.18 -26.54 16 7 H 0.04 2.43 8.02 -2.91 -0.02 2.40 16 8 C 0.04 2.02 5.47 84.66 0.46 2.49 16 9 N -0.93 -51.42 13.96 21.45 0.30 -51.12 16 10 Si 0.92 38.38 27.47 68.60 1.88 40.26 16 11 H -0.27 -10.85 7.11 99.48 0.71 -10.15 16 12 H -0.28 -11.82 7.11 99.48 0.71 -11.12 16 13 H -0.24 -9.35 6.54 99.48 0.65 -8.70 16 14 C 0.57 24.18 6.79 86.61 0.59 24.77 16 15 O -0.57 -26.81 16.34 -3.17 -0.05 -26.86 16 16 C -0.20 -8.15 4.66 -19.87 -0.09 -8.24 16 17 C -0.01 -0.52 7.86 22.44 0.18 -0.35 16 18 C -0.17 -6.28 9.67 22.33 0.22 -6.06 16 19 C 0.24 8.11 6.74 41.77 0.28 8.40 16 20 C -0.02 -0.70 7.03 24.21 0.17 -0.53 16 21 C -0.14 -3.52 10.57 22.39 0.24 -3.29 16 22 C -0.23 -4.02 10.88 22.10 0.24 -3.77 16 23 C -0.01 -0.11 12.08 67.05 0.81 0.70 16 24 O -0.18 -4.75 10.36 -5.76 -0.06 -4.81 16 25 N -0.50 -17.59 10.05 -297.42 -2.99 -20.58 16 26 C 0.36 13.12 7.76 85.20 0.66 13.78 16 27 O -0.47 -15.24 12.82 -86.35 -1.11 -16.35 16 28 H 0.12 2.22 8.06 -2.91 -0.02 2.19 16 29 H 0.10 2.34 7.84 -2.91 -0.02 2.32 16 30 H 0.11 3.01 8.06 -2.91 -0.02 2.99 16 31 H 0.08 2.95 7.76 -2.39 -0.02 2.93 16 32 H 0.08 2.87 7.23 -2.39 -0.02 2.85 16 33 H 0.05 1.91 7.13 -2.39 -0.02 1.89 16 34 H 0.03 1.41 5.56 -2.39 -0.01 1.39 16 35 H 0.27 14.13 8.31 -92.71 -0.77 13.36 16 36 H 0.16 7.29 5.22 -2.91 -0.02 7.27 16 37 H 0.15 5.14 7.87 -2.91 -0.02 5.12 16 38 H 0.16 3.75 8.06 -2.91 -0.02 3.72 16 39 H 0.18 1.97 8.06 -2.91 -0.02 1.95 16 40 H 0.25 1.67 8.06 -2.91 -0.02 1.65 16 41 H 0.42 9.02 9.06 -74.06 -0.67 8.35 16 Total: -1.00 -68.28 359.00 2.28 -65.99 By element: Atomic # 1 Polarization: 30.08 SS G_CDS: 0.36 Total: 30.43 kcal Atomic # 6 Polarization: 2.42 SS G_CDS: 5.99 Total: 8.41 kcal Atomic # 7 Polarization: -92.35 SS G_CDS: -4.73 Total: -97.07 kcal Atomic # 8 Polarization: -46.81 SS G_CDS: -1.22 Total: -48.03 kcal Atomic # 14 Polarization: 38.38 SS G_CDS: 1.88 Total: 40.26 kcal Total: -68.28 2.28 -65.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359436852.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.353 kcal (2) G-P(sol) polarization free energy of solvation -68.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds