Wall clock time and date at job start Tue Mar 31 2020 16:33:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.21339 * 120.00166 * 2 1 4 4 C 1.46408 * 119.99728 * 180.02562 * 2 1 3 5 5 C 1.37977 * 125.93662 * 179.97438 * 4 2 1 6 6 C 1.39952 * 106.72786 * 179.97438 * 5 4 2 7 7 C 1.36590 * 107.03242 * 0.02562 * 6 5 4 8 8 C 1.47417 * 125.65968 * 179.97438 * 7 6 5 9 9 O 1.21597 * 119.99766 * 354.07936 * 8 7 6 10 10 N 1.34770 * 120.00270 * 174.08301 * 8 7 6 11 11 C 1.46498 * 120.00105 * 354.69884 * 10 8 7 12 12 C 1.50703 * 109.46931 * 85.71833 * 11 10 8 13 13 H 1.07998 * 120.00115 * 359.97438 * 12 11 10 14 14 C 1.37876 * 119.99914 * 180.02562 * 12 11 10 15 15 N 1.31510 * 120.00245 * 359.97438 * 14 12 11 16 16 Si 1.86810 * 119.99886 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.47139 * 89.99708 * 16 14 12 18 18 H 1.48494 * 109.46933 * 209.99835 * 16 14 12 19 19 H 1.48496 * 109.46705 * 329.99627 * 16 14 12 20 20 C 1.46505 * 120.00020 * 174.42578 * 10 8 7 21 21 C 1.50702 * 109.47036 * 90.00220 * 20 10 8 22 22 C 1.38677 * 120.41403 * 269.71841 * 21 20 10 23 23 C 1.38631 * 118.41605 * 179.77969 * 22 21 20 24 24 C 1.38223 * 119.16332 * 0.51860 * 23 22 21 25 25 N 1.31851 * 120.76421 * 359.72039 * 24 23 22 26 26 C 1.31889 * 121.72712 * 0.02562 * 25 24 23 27 27 O 1.34448 * 108.68530 * 0.22317 * 7 6 5 28 28 H 1.09004 * 109.46926 * 239.99690 * 1 2 3 29 29 H 1.09001 * 109.47106 * 359.97438 * 1 2 3 30 30 H 1.09000 * 109.47145 * 119.99322 * 1 2 3 31 31 H 1.08007 * 126.63547 * 359.95927 * 5 4 2 32 32 H 1.07999 * 126.48344 * 179.97438 * 6 5 4 33 33 H 1.09003 * 109.47445 * 205.71187 * 11 10 8 34 34 H 1.09000 * 109.47325 * 325.72038 * 11 10 8 35 35 H 0.97001 * 120.00314 * 180.02562 * 15 14 12 36 36 H 1.08995 * 109.46994 * 209.99565 * 20 10 8 37 37 H 1.08999 * 109.46888 * 330.00023 * 20 10 8 38 38 H 1.07996 * 120.79248 * 0.02562 * 22 21 20 39 39 H 1.08004 * 120.41807 * 180.22147 * 23 22 21 40 40 H 1.08000 * 119.61845 * 179.74635 * 24 23 22 41 41 H 1.07995 * 119.61998 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1138 1.0508 0.0000 4 6 2.2390 -1.2680 -0.0006 5 6 3.6114 -1.4107 -0.0011 6 6 3.8734 -2.7855 -0.0009 7 6 2.6653 -3.4230 -0.0009 8 6 2.4643 -4.8834 -0.0012 9 8 3.4190 -5.6285 -0.1102 10 7 1.2224 -5.3927 0.1192 11 6 0.0861 -4.5018 0.3668 12 6 -0.4315 -3.9714 -0.9454 13 1 0.0391 -4.2679 -1.8711 14 6 -1.5053 -3.1067 -0.9640 15 7 -2.0781 -2.7451 0.1632 16 14 -2.1465 -2.4486 -2.5906 17 1 -3.1914 -3.3630 -3.1171 18 1 -2.7289 -1.0985 -2.3832 19 1 -1.0287 -2.3613 -3.5643 20 6 1.0077 -6.8368 -0.0034 21 6 1.1305 -7.4799 1.3540 22 6 2.3580 -7.9435 1.8028 23 6 2.4245 -8.5239 3.0600 24 6 1.2713 -8.6304 3.8145 25 7 0.1199 -8.1828 3.3534 26 6 0.0203 -7.6207 2.1645 27 8 1.6900 -2.4976 -0.0060 28 1 -0.3633 -0.5139 0.8900 29 1 -0.3633 1.0277 0.0005 30 1 -0.3633 -0.5137 -0.8900 31 1 4.3421 -0.6154 -0.0019 32 1 4.8466 -3.2538 -0.0016 33 1 -0.7055 -5.0544 0.8729 34 1 0.4066 -3.6698 0.9939 35 1 -2.8338 -2.1371 0.1501 36 1 0.0118 -7.0232 -0.4049 37 1 1.7552 -7.2594 -0.6747 38 1 3.2419 -7.8509 1.1892 39 1 3.3646 -8.8926 3.4430 40 1 1.3139 -9.0850 4.7932 41 1 -0.9401 -7.2663 1.8205 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362400292.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:33:59 Heat of formation + Delta-G solvation = -12.326417 kcal Electronic energy + Delta-G solvation = -28199.002178 eV Core-core repulsion = 24239.374277 eV Total energy + Delta-G solvation = -3959.627901 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.27433 -40.13018 -39.02444 -38.65044 -35.59106 -33.19833 -32.66906 -32.25954 -31.51607 -30.66218 -28.90595 -27.69236 -26.26962 -23.89163 -23.46665 -22.83594 -22.03420 -21.24100 -19.70504 -19.33700 -17.22975 -17.06388 -16.66109 -16.46042 -15.95990 -15.82124 -15.80330 -15.21242 -14.70737 -14.54016 -14.38533 -13.92771 -13.74532 -13.40469 -13.10478 -13.06627 -12.83034 -12.78900 -12.61214 -12.43977 -11.96678 -11.91654 -11.76474 -11.57144 -11.22986 -11.07860 -10.77798 -10.38493 -10.02089 -9.89133 -9.73629 -9.70648 -9.57543 -9.30616 -8.87444 -8.64207 -8.43897 -8.00620 -6.26971 -4.32350 0.86561 1.21739 1.45545 2.07619 2.93601 3.07799 3.13975 3.21991 3.25830 3.57577 3.59788 4.07543 4.22367 4.36892 4.59937 4.92054 5.02264 5.04542 5.07580 5.13472 5.18030 5.23768 5.38906 5.51850 5.77109 5.77549 5.83882 5.91271 5.94842 5.98608 6.00510 6.10851 6.28309 6.40742 6.49034 6.50646 6.52946 6.85775 7.03703 7.11012 7.29185 7.64484 7.67140 7.91419 7.93425 8.12026 8.48515 8.72180 9.32675 10.79782 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.011619 B = 0.004853 C = 0.003930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2409.212590 B = 5768.206150 C = 7122.469787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.445 3.555 3 O -0.457 6.457 4 C -0.092 4.092 5 C -0.146 4.146 6 C -0.165 4.165 7 C -0.012 4.012 8 C 0.595 3.405 9 O -0.546 6.546 10 N -0.577 5.577 11 C 0.234 3.766 12 C -0.528 4.528 13 H 0.059 0.941 14 C 0.075 3.925 15 N -0.883 5.883 16 Si 0.878 3.122 17 H -0.278 1.278 18 H -0.281 1.281 19 H -0.273 1.273 20 C 0.162 3.838 21 C -0.150 4.150 22 C -0.054 4.054 23 C -0.182 4.182 24 C 0.092 3.908 25 N -0.489 5.489 26 C 0.117 3.883 27 O -0.076 6.076 28 H 0.110 0.890 29 H 0.079 0.921 30 H 0.100 0.900 31 H 0.158 0.842 32 H 0.159 0.841 33 H 0.043 0.957 34 H 0.047 0.953 35 H 0.265 0.735 36 H 0.097 0.903 37 H 0.087 0.913 38 H 0.139 0.861 39 H 0.130 0.870 40 H 0.150 0.850 41 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.994 -4.607 2.738 8.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C 0.324 3.676 3 O -0.334 6.334 4 C -0.146 4.146 5 C -0.166 4.166 6 C -0.186 4.186 7 C -0.069 4.069 8 C 0.383 3.617 9 O -0.428 6.428 10 N -0.306 5.306 11 C 0.115 3.885 12 C -0.566 4.566 13 H 0.077 0.923 14 C -0.128 4.128 15 N -0.521 5.521 16 Si 0.705 3.295 17 H -0.204 1.204 18 H -0.206 1.206 19 H -0.198 1.198 20 C 0.039 3.961 21 C -0.153 4.153 22 C -0.080 4.080 23 C -0.201 4.201 24 C -0.065 4.065 25 N -0.198 5.198 26 C -0.041 4.041 27 O 0.033 5.967 28 H 0.128 0.872 29 H 0.097 0.903 30 H 0.118 0.882 31 H 0.176 0.824 32 H 0.177 0.823 33 H 0.061 0.939 34 H 0.065 0.935 35 H 0.075 0.925 36 H 0.116 0.884 37 H 0.105 0.895 38 H 0.157 0.843 39 H 0.148 0.852 40 H 0.168 0.832 41 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 5.492 -4.470 3.276 7.802 hybrid contribution 0.439 0.514 -1.415 1.568 sum 5.931 -3.956 1.861 7.368 Atomic orbital electron populations 1.22236 0.91414 1.04206 1.06871 1.21363 0.91963 0.84180 0.70079 1.90566 1.72656 1.31844 1.38342 1.23371 0.93060 0.86819 1.11309 1.22272 0.94548 0.96823 1.02938 1.21761 0.98403 0.92872 1.05518 1.22482 0.87076 0.90363 1.06950 1.16832 0.83603 0.83897 0.77404 1.90734 1.41056 1.57810 1.53183 1.48264 1.08134 1.07076 1.67080 1.19708 0.82574 0.88568 0.97677 1.21323 1.14997 1.27913 0.92395 0.92260 1.24758 0.96107 0.95873 0.96051 1.69913 1.22734 1.34232 1.25260 0.86822 0.79518 0.78779 0.84405 1.20410 1.20645 1.19760 1.20236 1.03717 0.80057 0.92096 1.21366 0.94556 1.00076 0.99292 1.21684 0.97819 0.93191 0.95325 1.22118 0.99992 1.02182 0.95846 1.22718 0.88163 0.96237 0.99406 1.67713 1.27716 1.10000 1.14351 1.22809 0.98734 0.93496 0.89018 1.84821 1.33161 1.12680 1.66012 0.87156 0.90252 0.88187 0.82438 0.82286 0.93941 0.93535 0.92467 0.88449 0.89497 0.84306 0.85171 0.83225 0.82459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.21 10.13 36.01 0.36 -2.85 16 2 C 0.44 7.87 7.23 -31.02 -0.22 7.65 16 3 O -0.46 -8.52 17.60 5.51 0.10 -8.42 16 4 C -0.09 -1.69 7.09 -36.39 -0.26 -1.95 16 5 C -0.15 -2.39 10.66 -39.04 -0.42 -2.81 16 6 C -0.17 -2.77 10.58 -39.53 -0.42 -3.19 16 7 C -0.01 -0.24 6.66 -36.44 -0.24 -0.48 16 8 C 0.60 11.68 7.62 -12.53 -0.10 11.59 16 9 O -0.55 -10.84 15.80 5.28 0.08 -10.76 16 10 N -0.58 -11.00 2.45 -177.71 -0.44 -11.44 16 11 C 0.23 5.01 4.74 -5.19 -0.02 4.99 16 12 C -0.53 -12.27 7.86 -34.44 -0.27 -12.54 16 13 H 0.06 1.44 7.81 -52.49 -0.41 1.03 16 14 C 0.08 1.77 5.18 -17.82 -0.09 1.68 16 15 N -0.88 -21.21 13.29 55.43 0.74 -20.48 16 16 Si 0.88 18.80 28.76 -169.99 -4.89 13.91 16 17 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 18 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 19 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 20 C 0.16 2.60 5.50 -5.19 -0.03 2.57 16 21 C -0.15 -2.28 5.48 -104.48 -0.57 -2.86 16 22 C -0.05 -0.76 9.73 -39.27 -0.38 -1.14 16 23 C -0.18 -2.25 10.11 -39.44 -0.40 -2.64 16 24 C 0.09 1.19 11.18 -17.55 -0.20 1.00 16 25 N -0.49 -7.60 10.36 -13.26 -0.14 -7.73 16 26 C 0.12 1.81 10.86 -17.55 -0.19 1.62 16 27 O -0.08 -1.53 6.27 4.31 0.03 -1.51 16 28 H 0.11 1.94 8.14 -51.93 -0.42 1.52 16 29 H 0.08 1.16 8.12 -51.93 -0.42 0.74 16 30 H 0.10 1.83 7.05 -51.93 -0.37 1.47 16 31 H 0.16 2.19 8.06 -52.48 -0.42 1.77 16 32 H 0.16 2.33 8.06 -52.49 -0.42 1.90 16 33 H 0.04 0.95 8.04 -51.93 -0.42 0.53 16 34 H 0.05 1.08 5.89 -51.93 -0.31 0.78 16 35 H 0.27 6.15 8.31 -40.82 -0.34 5.81 16 36 H 0.10 1.47 8.02 -51.93 -0.42 1.06 16 37 H 0.09 1.34 7.46 -51.93 -0.39 0.95 16 38 H 0.14 1.96 7.48 -52.49 -0.39 1.56 16 39 H 0.13 1.23 8.06 -52.48 -0.42 0.81 16 40 H 0.15 1.47 8.06 -52.49 -0.42 1.05 16 41 H 0.16 2.34 8.06 -52.49 -0.42 1.92 16 LS Contribution 363.09 15.07 5.47 5.47 Total: -1.00 -26.84 363.09 -7.28 -34.12 By element: Atomic # 1 Polarization: 10.98 SS G_CDS: -4.79 Total: 6.19 kcal Atomic # 6 Polarization: 4.09 SS G_CDS: -3.45 Total: 0.64 kcal Atomic # 7 Polarization: -39.81 SS G_CDS: 0.16 Total: -39.64 kcal Atomic # 8 Polarization: -20.90 SS G_CDS: 0.21 Total: -20.69 kcal Atomic # 14 Polarization: 18.80 SS G_CDS: -4.89 Total: 13.91 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -26.84 -7.28 -34.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362400292.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.796 kcal (2) G-P(sol) polarization free energy of solvation -26.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds