Wall clock time and date at job start Tue Mar 31 2020 16:03:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47174 * 2 1 4 4 N 1.46505 * 109.46960 * 240.00466 * 2 1 3 5 5 C 1.39775 * 120.00126 * 84.99923 * 4 2 1 6 6 C 1.38954 * 120.00780 * 179.97438 * 5 4 2 7 7 C 1.38002 * 119.99703 * 179.97438 * 6 5 4 8 8 C 1.38905 * 120.00778 * 0.26007 * 7 6 5 9 9 O 1.35795 * 119.99487 * 179.71935 * 8 7 6 10 10 C 1.34806 * 117.00105 * 354.45908 * 9 8 7 11 11 H 1.07995 * 120.00087 * 5.05500 * 10 9 8 12 12 C 1.38623 * 119.99845 * 185.05398 * 10 9 8 13 13 N 1.31577 * 120.00092 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 119.99988 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47266 * 89.99684 * 14 12 10 16 16 H 1.48495 * 109.47255 * 210.00388 * 14 12 10 17 17 H 1.48507 * 109.46629 * 330.00036 * 14 12 10 18 18 C 1.38904 * 120.00733 * 359.48757 * 8 7 6 19 19 C 1.38010 * 120.00499 * 0.51239 * 18 8 7 20 20 C 1.50696 * 109.47033 * 120.00209 * 2 1 3 21 21 C 1.38258 * 119.99957 * 79.72782 * 20 2 1 22 22 C 1.38217 * 119.99910 * 179.76685 * 21 20 2 23 23 C 1.38255 * 120.00128 * 0.49953 * 22 21 20 24 24 C 1.38217 * 119.99698 * 359.75128 * 23 22 21 25 25 N 1.48016 * 120.00023 * 179.97438 * 24 23 22 26 26 O 1.21797 * 120.00480 * 180.02562 * 25 24 23 27 27 O 1.21806 * 120.00183 * 0.02614 * 25 24 23 28 28 C 1.38213 * 120.00149 * 259.99666 * 20 2 1 29 29 H 1.09005 * 109.46972 * 59.99499 * 1 2 3 30 30 H 1.08994 * 109.47365 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46718 * 299.99952 * 1 2 3 32 32 H 0.97001 * 119.99403 * 264.99585 * 4 2 1 33 33 H 1.07997 * 119.99644 * 0.02562 * 6 5 4 34 34 H 1.08000 * 120.00051 * 179.97438 * 7 6 5 35 35 H 0.96996 * 120.00136 * 179.97438 * 13 12 10 36 36 H 1.07996 * 119.99809 * 180.25252 * 18 8 7 37 37 H 1.08001 * 120.00161 * 179.72091 * 19 18 8 38 38 H 1.07997 * 120.00184 * 359.97438 * 21 20 2 39 39 H 1.07997 * 119.99754 * 180.23322 * 22 21 20 40 40 H 1.07996 * 120.00240 * 179.72357 * 23 22 21 41 41 H 1.08004 * 119.99965 * 0.02562 * 28 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1963 5 6 2.1518 0.0068 -2.4003 6 6 2.6154 -0.6479 -3.5348 7 6 2.7466 0.0407 -4.7236 8 6 2.4204 1.3895 -4.7847 9 8 2.5550 2.0682 -5.9532 10 6 3.1172 1.4063 -6.9842 11 1 3.3623 0.3593 -6.8843 12 6 3.3807 2.0696 -8.1726 13 7 3.0825 3.3453 -8.2941 14 14 4.1591 1.1522 -9.6015 15 1 3.0930 0.5665 -10.4534 16 1 4.9760 2.0939 -10.4083 17 1 5.0271 0.0665 -9.0787 18 6 1.9519 2.0430 -3.6520 19 6 1.8205 1.3548 -2.4630 20 6 2.0323 -0.7104 1.2304 21 6 2.0614 -2.0922 1.2673 22 6 2.5266 -2.7438 2.3940 23 6 2.9532 -2.0139 3.4880 24 6 2.9192 -0.6326 3.4530 25 7 3.3754 0.1488 4.6244 26 8 3.3450 1.3660 4.5938 27 8 3.7811 -0.4254 5.6191 28 6 2.4587 0.0192 2.3241 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 2.2490 -1.6317 -1.1527 33 1 2.8723 -1.6957 -3.4865 34 1 3.1074 -0.4680 -5.6053 35 1 3.2672 3.8095 -9.1255 36 1 1.6944 3.0907 -3.7008 37 1 1.4606 1.8640 -1.5812 38 1 1.7238 -2.6625 0.4146 39 1 2.5529 -3.8231 2.4214 40 1 3.3125 -2.5231 4.3701 41 1 2.4315 1.0986 2.2970 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000386537799.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:03:22 Heat of formation + Delta-G solvation = 30.009629 kcal Electronic energy + Delta-G solvation = -25989.570672 eV Core-core repulsion = 22031.778600 eV Total energy + Delta-G solvation = -3957.792072 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.48335 -40.35267 -39.07168 -37.41933 -36.85396 -35.45249 -32.48783 -32.35941 -31.80041 -30.43133 -29.55632 -27.34112 -26.82667 -25.24608 -24.12018 -23.21400 -22.35201 -21.48186 -20.62667 -19.12604 -18.93140 -17.85782 -17.81819 -17.45603 -17.07939 -16.48780 -16.06348 -15.16068 -14.96418 -14.56850 -14.33408 -14.24770 -13.90270 -13.62779 -13.43254 -13.14453 -12.91499 -12.75230 -12.57360 -12.46706 -12.19393 -11.86585 -11.69204 -11.60327 -11.48452 -11.42419 -11.35829 -11.25397 -11.00601 -10.62409 -10.40583 -10.07448 -9.72353 -9.34506 -9.27922 -8.54511 -8.26525 -6.53552 -6.37941 -3.95452 -0.53729 0.41986 0.97981 1.05767 2.11261 2.46176 2.77483 3.14504 3.15623 3.20133 3.50945 3.84900 3.96118 4.01155 4.23991 4.35173 4.46136 4.58105 4.58849 4.95117 5.02099 5.06234 5.14724 5.23898 5.33640 5.38090 5.48218 5.49043 5.56370 5.65506 5.71232 5.78293 5.99076 6.09642 6.12902 6.15172 6.42180 6.76526 6.79876 7.03439 7.24734 7.32375 7.34545 7.53492 7.80665 8.04592 8.06251 9.07910 9.81081 10.80675 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.024115 B = 0.002070 C = 0.002030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.837070 B =13526.518744 C =13787.496637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.196 3.804 3 H 0.091 0.909 4 N -0.754 5.754 5 C 0.119 3.881 6 C -0.137 4.137 7 C -0.191 4.191 8 C 0.116 3.884 9 O -0.186 6.186 10 C -0.388 4.388 11 H 0.088 0.912 12 C 0.037 3.963 13 N -0.867 5.867 14 Si 0.938 3.062 15 H -0.274 1.274 16 H -0.278 1.278 17 H -0.269 1.269 18 C -0.151 4.151 19 C -0.144 4.144 20 C -0.078 4.078 21 C -0.061 4.061 22 C -0.113 4.113 23 C -0.060 4.060 24 C -0.041 4.041 25 N 0.028 4.972 26 O -0.157 6.157 27 O -0.163 6.163 28 C -0.047 4.047 29 H 0.073 0.927 30 H 0.058 0.942 31 H 0.060 0.940 32 H 0.389 0.611 33 H 0.105 0.895 34 H 0.128 0.872 35 H 0.268 0.732 36 H 0.118 0.882 37 H 0.112 0.888 38 H 0.143 0.857 39 H 0.149 0.851 40 H 0.153 0.847 41 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.300 -12.628 20.594 24.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.090 3.910 3 H 0.109 0.891 4 N -0.391 5.391 5 C 0.022 3.978 6 C -0.159 4.159 7 C -0.211 4.211 8 C 0.064 3.936 9 O -0.091 6.091 10 C -0.465 4.465 11 H 0.106 0.894 12 C -0.167 4.167 13 N -0.503 5.503 14 Si 0.763 3.237 15 H -0.200 1.200 16 H -0.204 1.204 17 H -0.194 1.194 18 C -0.171 4.171 19 C -0.165 4.165 20 C -0.080 4.080 21 C -0.079 4.079 22 C -0.132 4.132 23 C -0.079 4.079 24 C -0.124 4.124 25 N 0.548 4.452 26 O -0.373 6.373 27 O -0.378 6.378 28 C -0.066 4.066 29 H 0.092 0.908 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.224 0.776 33 H 0.123 0.877 34 H 0.146 0.854 35 H 0.078 0.922 36 H 0.136 0.864 37 H 0.130 0.870 38 H 0.161 0.839 39 H 0.166 0.834 40 H 0.170 0.830 41 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -3.613 -12.434 19.860 23.709 hybrid contribution 0.655 -0.741 -0.361 1.052 sum -2.958 -13.175 19.500 23.718 Atomic orbital electron populations 1.22336 0.94688 1.02647 1.02804 1.19573 0.93786 0.96314 0.81359 0.89100 1.44251 1.77067 1.11338 1.06417 1.17305 1.03092 0.91763 0.85623 1.20205 1.05154 0.98626 0.91952 1.20993 1.07322 0.94705 0.98105 1.19264 0.95910 0.90754 0.87706 1.83987 1.70431 1.38907 1.15754 1.21229 1.40006 0.94917 0.90341 0.89418 1.25229 0.97428 0.95855 0.98152 1.70042 1.45086 1.08550 1.26634 0.85760 0.78957 0.78725 0.80235 1.20023 1.20356 1.19363 1.20038 1.06497 0.99770 0.90772 1.20198 1.06489 0.92573 0.97288 1.20135 0.98467 0.93869 0.95508 1.21485 0.94203 0.94067 0.98159 1.21221 0.98800 1.01073 0.92068 1.21086 0.95725 0.90776 1.00327 1.21093 1.10843 0.92125 0.88344 1.43633 0.98181 1.01398 1.01998 1.94566 1.58747 0.95491 1.88536 1.94536 1.48084 1.72751 1.22429 1.20927 0.93421 1.02311 0.89968 0.90762 0.92291 0.92077 0.77628 0.87669 0.85446 0.92216 0.86417 0.87029 0.83949 0.83366 0.82963 0.82668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.39 9.40 37.16 0.35 -1.04 16 2 C 0.20 1.78 2.47 -69.08 -0.17 1.61 16 3 H 0.09 0.89 6.34 -51.93 -0.33 0.56 16 4 N -0.75 -8.32 5.20 -53.24 -0.28 -8.59 16 5 C 0.12 1.83 6.64 -83.71 -0.56 1.28 16 6 C -0.14 -2.34 9.89 -39.40 -0.39 -2.73 16 7 C -0.19 -4.00 9.16 -39.42 -0.36 -4.36 16 8 C 0.12 2.74 6.65 -39.09 -0.26 2.48 16 9 O -0.19 -5.27 9.76 -0.02 0.00 -5.27 16 10 C -0.39 -10.80 9.48 30.87 0.29 -10.51 16 11 H 0.09 2.25 5.20 -52.49 -0.27 1.98 16 12 C 0.04 1.01 5.49 -17.52 -0.10 0.91 16 13 N -0.87 -25.55 13.67 55.48 0.76 -24.79 16 14 Si 0.94 20.54 29.55 -169.99 -5.02 15.52 16 15 H -0.27 -5.86 7.11 56.52 0.40 -5.45 16 16 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 17 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 18 C -0.15 -3.06 9.98 -39.42 -0.39 -3.45 16 19 C -0.14 -2.37 8.84 -39.40 -0.35 -2.72 16 20 C -0.08 -0.60 4.95 -104.63 -0.52 -1.12 16 21 C -0.06 -0.36 9.05 -39.58 -0.36 -0.72 16 22 C -0.11 -0.58 10.05 -39.58 -0.40 -0.98 16 23 C -0.06 -0.41 9.56 -39.58 -0.38 -0.79 16 24 C -0.04 -0.38 6.85 -79.95 -0.55 -0.93 16 25 N 0.03 0.33 4.45 33.96 0.15 0.48 16 26 O -0.16 -1.98 18.45 -29.46 -0.54 -2.53 16 27 O -0.16 -1.96 18.45 -29.46 -0.54 -2.51 16 28 C -0.05 -0.40 9.18 -39.58 -0.36 -0.76 16 29 H 0.07 0.74 7.70 -51.93 -0.40 0.34 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.39 3.57 6.90 -40.82 -0.28 3.29 16 33 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16 34 H 0.13 2.69 5.63 -52.49 -0.30 2.39 16 35 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 36 H 0.12 2.32 8.06 -52.49 -0.42 1.89 16 37 H 0.11 1.53 6.10 -52.49 -0.32 1.21 16 38 H 0.14 0.62 6.93 -52.49 -0.36 0.26 16 39 H 0.15 0.35 8.06 -52.49 -0.42 -0.08 16 40 H 0.15 0.84 7.61 -52.49 -0.40 0.44 16 41 H 0.16 1.23 7.59 -52.48 -0.40 0.83 16 LS Contribution 357.27 15.07 5.38 5.38 Total: -1.00 -32.36 357.27 -8.90 -41.26 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: -4.31 Total: 4.87 kcal Atomic # 6 Polarization: -19.33 SS G_CDS: -4.50 Total: -23.83 kcal Atomic # 7 Polarization: -33.54 SS G_CDS: 0.63 Total: -32.90 kcal Atomic # 8 Polarization: -9.22 SS G_CDS: -1.09 Total: -10.30 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -32.36 -8.90 -41.26 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000386537799.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.274 kcal (2) G-P(sol) polarization free energy of solvation -32.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.264 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds