Wall clock time and date at job start Tue Mar 31 2020 16:03:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47174 * 2 1 4 4 N 1.46505 * 109.46960 * 240.00466 * 2 1 3 5 5 C 1.39775 * 120.00126 * 84.99923 * 4 2 1 6 6 C 1.38954 * 120.00780 * 179.97438 * 5 4 2 7 7 C 1.38002 * 119.99703 * 179.97438 * 6 5 4 8 8 C 1.38905 * 120.00778 * 0.26007 * 7 6 5 9 9 O 1.35795 * 119.99487 * 179.71935 * 8 7 6 10 10 C 1.34806 * 117.00105 * 354.45908 * 9 8 7 11 11 H 1.07995 * 120.00087 * 5.05500 * 10 9 8 12 12 C 1.38623 * 119.99845 * 185.05398 * 10 9 8 13 13 N 1.31577 * 120.00092 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 119.99988 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47266 * 89.99684 * 14 12 10 16 16 H 1.48495 * 109.47255 * 210.00388 * 14 12 10 17 17 H 1.48507 * 109.46629 * 330.00036 * 14 12 10 18 18 C 1.38904 * 120.00733 * 359.48757 * 8 7 6 19 19 C 1.38010 * 120.00499 * 0.51239 * 18 8 7 20 20 C 1.50696 * 109.47033 * 120.00209 * 2 1 3 21 21 C 1.38258 * 119.99957 * 79.72782 * 20 2 1 22 22 C 1.38217 * 119.99910 * 179.76685 * 21 20 2 23 23 C 1.38255 * 120.00128 * 0.49953 * 22 21 20 24 24 C 1.38217 * 119.99698 * 359.75128 * 23 22 21 25 25 N 1.48016 * 120.00023 * 179.97438 * 24 23 22 26 26 O 1.21797 * 120.00480 * 180.02562 * 25 24 23 27 27 O 1.21806 * 120.00183 * 0.02614 * 25 24 23 28 28 C 1.38213 * 120.00149 * 259.99666 * 20 2 1 29 29 H 1.09005 * 109.46972 * 59.99499 * 1 2 3 30 30 H 1.08994 * 109.47365 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46718 * 299.99952 * 1 2 3 32 32 H 0.97001 * 119.99403 * 264.99585 * 4 2 1 33 33 H 1.07997 * 119.99644 * 0.02562 * 6 5 4 34 34 H 1.08000 * 120.00051 * 179.97438 * 7 6 5 35 35 H 0.96996 * 120.00136 * 179.97438 * 13 12 10 36 36 H 1.07996 * 119.99809 * 180.25252 * 18 8 7 37 37 H 1.08001 * 120.00161 * 179.72091 * 19 18 8 38 38 H 1.07997 * 120.00184 * 359.97438 * 21 20 2 39 39 H 1.07997 * 119.99754 * 180.23322 * 22 21 20 40 40 H 1.07996 * 120.00240 * 179.72357 * 23 22 21 41 41 H 1.08004 * 119.99965 * 0.02562 * 28 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1963 5 6 2.1518 0.0068 -2.4003 6 6 2.6154 -0.6479 -3.5348 7 6 2.7466 0.0407 -4.7236 8 6 2.4204 1.3895 -4.7847 9 8 2.5550 2.0682 -5.9532 10 6 3.1172 1.4063 -6.9842 11 1 3.3623 0.3593 -6.8843 12 6 3.3807 2.0696 -8.1726 13 7 3.0825 3.3453 -8.2941 14 14 4.1591 1.1522 -9.6015 15 1 3.0930 0.5665 -10.4534 16 1 4.9760 2.0939 -10.4083 17 1 5.0271 0.0665 -9.0787 18 6 1.9519 2.0430 -3.6520 19 6 1.8205 1.3548 -2.4630 20 6 2.0323 -0.7104 1.2304 21 6 2.0614 -2.0922 1.2673 22 6 2.5266 -2.7438 2.3940 23 6 2.9532 -2.0139 3.4880 24 6 2.9192 -0.6326 3.4530 25 7 3.3754 0.1488 4.6244 26 8 3.3450 1.3660 4.5938 27 8 3.7811 -0.4254 5.6191 28 6 2.4587 0.0192 2.3241 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 2.2490 -1.6317 -1.1527 33 1 2.8723 -1.6957 -3.4865 34 1 3.1074 -0.4680 -5.6053 35 1 3.2672 3.8095 -9.1255 36 1 1.6944 3.0907 -3.7008 37 1 1.4606 1.8640 -1.5812 38 1 1.7238 -2.6625 0.4146 39 1 2.5529 -3.8231 2.4214 40 1 3.3125 -2.5231 4.3701 41 1 2.4315 1.0986 2.2970 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000386537799.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:03:21 Heat of formation + Delta-G solvation = 11.431534 kcal Electronic energy + Delta-G solvation = -25990.376279 eV Core-core repulsion = 22031.778600 eV Total energy + Delta-G solvation = -3958.597679 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -43.29023 -41.11955 -40.51472 -38.81336 -37.72532 -36.64465 -34.23174 -33.04440 -32.92458 -31.81901 -30.43393 -28.67500 -27.66130 -27.06345 -24.92947 -23.99879 -23.56952 -22.65305 -21.81483 -20.07652 -19.78554 -19.44034 -18.87445 -18.63899 -18.13887 -17.42666 -16.96720 -16.28889 -16.11602 -15.89640 -15.43332 -15.31754 -15.16576 -14.91243 -14.60092 -14.24276 -14.08209 -14.01310 -13.46661 -13.41801 -13.24129 -13.15686 -12.94317 -12.75252 -12.68741 -12.56496 -12.35124 -12.31988 -12.19946 -12.10247 -11.94721 -11.08199 -10.96627 -10.61633 -10.34256 -10.15465 -9.76485 -8.39180 -7.97050 -6.02896 -1.28414 -0.11218 0.26325 0.33928 0.59695 0.93074 1.36875 1.46556 1.54118 2.20720 2.22742 2.55729 2.91670 3.18886 3.26420 3.44957 3.67320 3.74083 3.82516 3.92391 3.96522 4.14948 4.17695 4.30055 4.34912 4.55743 4.59040 4.64184 4.69895 4.84675 4.87662 4.90978 4.98484 5.06693 5.12880 5.16363 5.28237 5.33144 5.46545 5.48511 5.55756 5.79370 5.96445 6.11878 6.41398 6.55134 6.98357 7.06820 7.94019 8.85303 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.024115 B = 0.002070 C = 0.002030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.837070 B =13526.518744 C =13787.496637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.195 3.805 3 H 0.085 0.915 4 N -0.737 5.737 5 C 0.155 3.845 6 C -0.140 4.140 7 C -0.195 4.195 8 C 0.063 3.937 9 O -0.243 6.243 10 C -0.404 4.404 11 H 0.100 0.900 12 C -0.030 4.030 13 N -0.927 5.927 14 Si 1.016 2.984 15 H -0.264 1.264 16 H -0.275 1.275 17 H -0.253 1.253 18 C -0.158 4.158 19 C -0.143 4.143 20 C -0.083 4.083 21 C -0.051 4.051 22 C -0.099 4.099 23 C -0.057 4.057 24 C -0.061 4.061 25 N 0.030 4.970 26 O -0.196 6.196 27 O -0.170 6.170 28 C -0.054 4.054 29 H 0.057 0.943 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.405 0.595 33 H 0.143 0.857 34 H 0.118 0.882 35 H 0.269 0.731 36 H 0.110 0.890 37 H 0.143 0.857 38 H 0.168 0.832 39 H 0.186 0.814 40 H 0.166 0.834 41 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.445 -16.883 22.402 28.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.089 3.911 3 H 0.103 0.897 4 N -0.373 5.373 5 C 0.055 3.945 6 C -0.162 4.162 7 C -0.215 4.215 8 C 0.013 3.987 9 O -0.151 6.151 10 C -0.481 4.481 11 H 0.117 0.883 12 C -0.226 4.226 13 N -0.567 5.567 14 Si 0.836 3.164 15 H -0.189 1.189 16 H -0.199 1.199 17 H -0.177 1.177 18 C -0.178 4.178 19 C -0.165 4.165 20 C -0.085 4.085 21 C -0.069 4.069 22 C -0.117 4.117 23 C -0.076 4.076 24 C -0.144 4.144 25 N 0.544 4.456 26 O -0.405 6.405 27 O -0.386 6.386 28 C -0.074 4.074 29 H 0.076 0.924 30 H 0.090 0.910 31 H 0.092 0.908 32 H 0.242 0.758 33 H 0.161 0.839 34 H 0.136 0.864 35 H 0.078 0.922 36 H 0.128 0.872 37 H 0.161 0.839 38 H 0.185 0.815 39 H 0.204 0.796 40 H 0.183 0.817 41 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -3.775 -16.697 21.767 27.692 hybrid contribution 0.591 0.352 -0.500 0.850 sum -3.184 -16.346 21.267 27.011 Atomic orbital electron populations 1.22288 0.93714 1.03459 1.02674 1.19641 0.94389 0.96074 0.80984 0.89743 1.44290 1.75648 1.12008 1.05389 1.17384 0.99106 0.91274 0.86750 1.20491 1.04648 1.00247 0.90785 1.21064 1.07145 0.93804 0.99481 1.19783 0.99033 0.92347 0.87497 1.83935 1.73059 1.40707 1.17434 1.21745 1.39823 0.95621 0.90905 0.88315 1.26534 0.98062 0.96847 1.01167 1.70202 1.48023 1.10759 1.27699 0.84615 0.78194 0.77551 0.76026 1.18916 1.19949 1.17664 1.20242 1.06301 0.99891 0.91377 1.20471 1.05939 0.93298 0.96806 1.19919 0.99466 0.94653 0.94434 1.21827 0.92699 0.93227 0.99174 1.21630 0.96756 1.02720 0.90583 1.21437 0.94922 0.89724 1.01545 1.21269 1.12684 0.92871 0.87576 1.44015 0.97636 1.01363 1.02563 1.94557 1.60404 0.96486 1.89086 1.94503 1.48153 1.72558 1.23422 1.20942 0.93751 1.02411 0.90258 0.92403 0.91023 0.90803 0.75786 0.83920 0.86398 0.92194 0.87177 0.83927 0.81481 0.79633 0.81685 0.83129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.12 9.40 71.98 0.68 -1.44 16 2 C 0.19 2.77 2.47 44.24 0.11 2.88 16 3 H 0.08 1.38 6.34 -2.39 -0.02 1.36 16 4 N -0.74 -12.76 5.20 -322.34 -1.68 -14.44 16 5 C 0.15 4.26 6.64 38.22 0.25 4.51 16 6 C -0.14 -4.36 9.89 22.39 0.22 -4.14 16 7 C -0.20 -8.17 9.16 22.37 0.20 -7.97 16 8 C 0.06 3.10 6.65 22.59 0.15 3.25 16 9 O -0.24 -14.74 9.76 -23.00 -0.22 -14.97 16 10 C -0.40 -23.66 9.48 67.91 0.64 -23.02 16 11 H 0.10 5.26 5.20 -2.91 -0.02 5.25 16 12 C -0.03 -1.73 5.49 84.82 0.47 -1.26 16 13 N -0.93 -57.85 13.67 21.61 0.30 -57.56 16 14 Si 1.02 43.26 29.55 68.60 2.03 45.29 16 15 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 16 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 17 H -0.25 -9.93 7.11 99.48 0.71 -9.22 16 18 C -0.16 -6.59 9.98 22.38 0.22 -6.36 16 19 C -0.14 -4.49 8.84 22.39 0.20 -4.29 16 20 C -0.08 -0.95 4.95 -19.87 -0.10 -1.05 16 21 C -0.05 -0.33 9.05 22.27 0.20 -0.13 16 22 C -0.10 -0.47 10.05 22.27 0.22 -0.24 16 23 C -0.06 -0.57 9.56 22.27 0.21 -0.36 16 24 C -0.06 -1.00 6.85 36.38 0.25 -0.75 16 25 N 0.03 0.68 4.45 -46.46 -0.21 0.48 16 26 O -0.20 -5.09 18.45 18.89 0.35 -4.74 16 27 O -0.17 -3.98 18.45 18.88 0.35 -3.63 16 28 C -0.05 -0.80 9.18 22.27 0.20 -0.59 16 29 H 0.06 0.97 7.70 -2.38 -0.02 0.96 16 30 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.40 4.96 6.90 -92.71 -0.64 4.32 16 33 H 0.14 3.38 8.06 -2.91 -0.02 3.36 16 34 H 0.12 5.06 5.63 -2.91 -0.02 5.04 16 35 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 36 H 0.11 4.60 8.06 -2.91 -0.02 4.58 16 37 H 0.14 3.55 6.10 -2.91 -0.02 3.53 16 38 H 0.17 0.29 6.93 -2.91 -0.02 0.27 16 39 H 0.19 -0.43 8.06 -2.91 -0.02 -0.45 16 40 H 0.17 1.22 7.61 -2.91 -0.02 1.20 16 41 H 0.15 2.28 7.59 -2.91 -0.02 2.25 16 Total: -1.00 -77.96 357.27 5.51 -72.45 By element: Atomic # 1 Polarization: 17.61 SS G_CDS: 0.45 Total: 18.07 kcal Atomic # 6 Polarization: -45.10 SS G_CDS: 4.14 Total: -40.95 kcal Atomic # 7 Polarization: -69.93 SS G_CDS: -1.59 Total: -71.52 kcal Atomic # 8 Polarization: -23.81 SS G_CDS: 0.47 Total: -23.34 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.29 kcal Total: -77.96 5.51 -72.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000386537799.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.885 kcal (2) G-P(sol) polarization free energy of solvation -77.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.454 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds