Wall clock time and date at job start Tue Mar 31 2020 16:57:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34891 * 117.00382 * 2 1 4 4 O 1.21628 * 120.00400 * 359.97438 * 3 2 1 5 5 C 1.46468 * 120.00231 * 180.02562 * 3 2 1 6 6 C 1.38003 * 126.18242 * 180.02562 * 5 3 2 7 7 C 1.40167 * 107.10176 * 179.97438 * 6 5 3 8 8 N 1.40637 * 126.12165 * 179.97438 * 7 6 5 9 9 C 1.34781 * 120.00185 * 0.02562 * 8 7 6 10 10 O 1.21571 * 119.99775 * 359.97438 * 9 8 7 11 11 C 1.47860 * 119.99907 * 180.02562 * 9 8 7 12 12 C 1.39921 * 120.03244 * 359.97438 * 11 9 8 13 13 C 1.38330 * 120.36460 * 180.02562 * 12 11 9 14 14 C 1.37757 * 120.40513 * 359.97438 * 13 12 11 15 15 C 1.40742 * 120.04416 * 0.02562 * 14 13 12 16 16 C 1.41442 * 120.17642 * 180.02562 * 15 14 13 17 17 H 1.07999 * 119.99542 * 335.19709 * 16 15 14 18 18 C 1.39934 * 120.00391 * 155.20386 * 16 15 14 19 19 N 1.30832 * 119.99780 * 342.29141 * 18 16 15 20 20 Si 1.86793 * 120.00293 * 162.28977 * 18 16 15 21 21 H 1.48498 * 109.47018 * 60.00081 * 20 18 16 22 22 H 1.48499 * 109.47111 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47416 * 300.00115 * 20 18 16 24 24 C 1.39012 * 120.02190 * 179.97438 * 11 9 8 25 25 C 1.35974 * 107.76096 * 0.22506 * 7 6 5 26 26 N 1.35800 * 108.78447 * 359.63310 * 25 7 6 27 27 C 1.46497 * 125.64576 * 180.14526 * 26 25 7 28 28 H 1.08994 * 109.47608 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46589 * 300.00245 * 1 2 3 30 30 H 1.09003 * 109.47224 * 59.99817 * 1 2 3 31 31 H 1.08004 * 126.44777 * 359.97048 * 6 5 3 32 32 H 0.97010 * 120.00474 * 180.02562 * 8 7 6 33 33 H 1.08005 * 119.82261 * 359.97438 * 12 11 9 34 34 H 1.07999 * 119.79526 * 179.97438 * 13 12 11 35 35 H 1.07999 * 119.97322 * 180.02562 * 14 13 12 36 36 H 0.96997 * 120.00049 * 180.02562 * 19 18 16 37 37 H 1.07991 * 120.20151 * 0.25515 * 24 11 9 38 38 H 1.07990 * 125.60708 * 179.76804 * 25 7 6 39 39 H 1.09001 * 109.47225 * 270.26311 * 27 26 25 40 40 H 1.09004 * 109.47088 * 30.26534 * 27 26 25 41 41 H 1.09005 * 109.47445 * 150.26268 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0645 1.2018 0.0000 4 8 1.4022 2.2220 -0.0005 5 6 3.5271 1.2785 -0.0006 6 6 4.2825 2.4334 -0.0001 7 6 5.6293 2.0452 -0.0004 8 7 6.7406 2.9071 -0.0006 9 6 6.5578 4.2424 0.0000 10 8 5.4322 4.7018 0.0001 11 6 7.7262 5.1485 -0.0008 12 6 9.0220 4.6204 -0.0016 13 6 10.1200 5.4618 -0.0018 14 6 9.9508 6.8289 -0.0018 15 6 8.6551 7.3786 -0.0011 16 6 8.4781 8.7819 -0.0016 17 1 9.2532 9.4240 0.3898 18 6 7.2987 9.3382 -0.5092 19 7 6.5212 8.6274 -1.2850 20 14 6.8344 11.0957 -0.0790 21 1 7.8981 12.0182 -0.5506 22 1 5.5493 11.4433 -0.7371 23 1 6.6861 11.2224 1.3931 24 6 7.5383 6.5259 -0.0008 25 6 5.6691 0.6860 -0.0060 26 7 4.3968 0.2112 -0.0011 27 6 4.0132 -1.2026 -0.0016 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 3.9066 3.4459 0.0002 32 1 7.6388 2.5405 -0.0011 33 1 9.1657 3.5500 -0.0012 34 1 11.1160 5.0443 -0.0020 35 1 10.8129 7.4793 -0.0024 36 1 5.7038 9.0131 -1.6372 37 1 6.5401 6.9379 0.0039 38 1 6.5652 0.0833 -0.0111 39 1 3.9180 -1.5529 -1.0294 40 1 4.7770 -1.7866 0.5120 41 1 3.0591 -1.3205 0.5122 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000488244799.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:57:03 Heat of formation + Delta-G solvation = -43.890425 kcal Electronic energy + Delta-G solvation = -26542.972857 eV Core-core repulsion = 22581.976238 eV Total energy + Delta-G solvation = -3960.996619 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.56070 -40.02444 -39.04586 -37.04482 -36.52766 -34.55394 -33.72766 -32.08809 -30.25169 -29.57704 -29.42519 -27.60323 -26.30136 -25.28131 -23.62551 -22.66746 -21.05482 -20.46507 -20.27582 -19.15167 -18.25791 -17.56421 -17.05323 -16.61554 -16.03600 -15.59840 -15.36317 -15.33699 -15.01849 -14.65059 -14.23496 -14.04412 -13.78293 -13.42239 -13.23908 -13.05570 -12.79628 -12.67638 -12.52105 -12.47361 -12.21605 -12.11434 -11.66424 -11.17436 -11.08665 -11.00719 -10.78690 -10.74261 -10.52131 -10.33086 -9.99663 -9.70887 -9.20488 -8.98721 -8.47311 -7.76231 -7.53668 -7.43758 -6.79543 -4.41392 1.17047 2.06552 2.45810 2.63437 2.67905 2.83220 3.09317 3.11193 3.16211 3.21245 3.68177 3.92118 3.96413 4.59202 4.64745 4.66296 4.85681 4.90787 4.95780 4.99662 5.23595 5.30529 5.34276 5.59545 5.65365 5.79782 6.00463 6.09409 6.18335 6.24922 6.52206 6.68101 6.76380 6.97955 7.00168 7.04529 7.20190 7.28237 7.36782 7.68089 7.68188 7.74284 7.90935 8.05406 8.17592 8.49329 8.79737 8.82331 8.89259 10.15162 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.015603 B = 0.002846 C = 0.002427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1794.068218 B = 9835.141841 C =11535.278877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.366 6.366 3 C 0.538 3.462 4 O -0.493 6.493 5 C -0.046 4.046 6 C -0.090 4.090 7 C 0.073 3.927 8 N -0.654 5.654 9 C 0.564 3.436 10 O -0.525 6.525 11 C -0.126 4.126 12 C -0.220 4.220 13 C -0.096 4.096 14 C -0.212 4.212 15 C 0.099 3.901 16 C -0.459 4.459 17 H 0.081 0.919 18 C 0.073 3.927 19 N -0.781 5.781 20 Si 0.911 3.089 21 H -0.265 1.265 22 H -0.277 1.277 23 H -0.263 1.263 24 C -0.089 4.089 25 C -0.011 4.011 26 N -0.421 5.421 27 C 0.073 3.927 28 H 0.100 0.900 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.178 0.822 32 H 0.409 0.591 33 H 0.090 0.910 34 H 0.093 0.907 35 H 0.096 0.904 36 H 0.286 0.714 37 H 0.135 0.865 38 H 0.174 0.826 39 H 0.075 0.925 40 H 0.084 0.916 41 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.422 -19.662 1.793 20.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.284 6.284 3 C 0.383 3.617 4 O -0.380 6.380 5 C -0.156 4.156 6 C -0.119 4.119 7 C -0.028 4.028 8 N -0.299 5.299 9 C 0.356 3.644 10 O -0.401 6.401 11 C -0.129 4.129 12 C -0.240 4.240 13 C -0.115 4.115 14 C -0.232 4.232 15 C 0.096 3.904 16 C -0.488 4.488 17 H 0.099 0.901 18 C -0.147 4.147 19 N -0.405 5.405 20 Si 0.735 3.265 21 H -0.190 1.190 22 H -0.202 1.202 23 H -0.187 1.187 24 C -0.109 4.109 25 C -0.148 4.148 26 N -0.098 5.098 27 C -0.068 4.068 28 H 0.119 0.881 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.195 0.805 32 H 0.246 0.754 33 H 0.108 0.892 34 H 0.112 0.888 35 H 0.114 0.886 36 H 0.097 0.903 37 H 0.152 0.848 38 H 0.191 0.809 39 H 0.094 0.906 40 H 0.103 0.897 41 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -6.814 -19.330 1.637 20.561 hybrid contribution 0.167 0.443 0.008 0.474 sum -6.647 -18.887 1.646 20.090 Atomic orbital electron populations 1.23254 0.76077 1.03489 1.02874 1.86574 1.23643 1.32944 1.85239 1.19759 0.86920 0.81615 0.73362 1.90937 1.65350 1.35674 1.46067 1.19284 0.86521 0.87602 1.22178 1.21856 0.90222 0.98341 1.01473 1.16964 0.88315 0.88926 1.08583 1.43028 1.07155 1.05591 1.74146 1.18934 0.90002 0.80747 0.74713 1.90639 1.25094 1.75904 1.48507 1.19348 0.90913 0.93870 1.08784 1.20317 0.91928 0.96750 1.15033 1.20428 0.96361 0.93881 1.00792 1.21100 0.96555 0.93818 1.11685 1.17595 0.90473 0.93556 0.88767 1.19562 1.01734 0.91813 1.35673 0.90066 1.25970 0.95477 1.00526 0.92677 1.69772 1.11270 1.38395 1.21076 0.86315 0.78457 0.81638 0.80070 1.18988 1.20183 1.18701 1.21640 1.00512 0.89816 0.98930 1.21330 0.87430 0.93090 1.12932 1.43630 1.05011 1.06085 1.55052 1.22204 1.03088 0.77740 1.03730 0.88147 0.91767 0.91737 0.80486 0.75427 0.89216 0.88839 0.88582 0.90267 0.84751 0.80891 0.90648 0.89692 0.88511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.29 10.57 101.05 1.07 1.36 16 2 O -0.37 -4.01 7.98 -41.01 -0.33 -4.33 16 3 C 0.54 7.98 7.92 34.05 0.27 8.25 16 4 O -0.49 -8.87 16.68 -19.36 -0.32 -9.19 16 5 C -0.05 -0.70 6.88 -82.01 -0.56 -1.26 16 6 C -0.09 -1.64 9.43 -38.94 -0.37 -2.01 16 7 C 0.07 1.17 6.91 -83.90 -0.58 0.59 16 8 N -0.65 -11.13 5.42 -10.88 -0.06 -11.19 16 9 C 0.56 12.38 7.74 -12.32 -0.10 12.29 16 10 O -0.53 -13.11 13.50 5.30 0.07 -13.04 16 11 C -0.13 -2.93 5.87 -105.04 -0.62 -3.55 16 12 C -0.22 -4.50 9.55 -38.92 -0.37 -4.87 16 13 C -0.10 -2.01 10.01 -39.72 -0.40 -2.41 16 14 C -0.21 -4.96 9.78 -38.81 -0.38 -5.34 16 15 C 0.10 2.59 5.57 -106.87 -0.60 1.99 16 16 C -0.46 -12.00 9.05 -37.73 -0.34 -12.34 16 17 H 0.08 2.01 7.91 -52.49 -0.41 1.59 16 18 C 0.07 1.85 5.14 -17.34 -0.09 1.76 16 19 N -0.78 -20.74 10.97 55.55 0.61 -20.13 16 20 Si 0.91 18.88 29.59 -169.99 -5.03 13.85 16 21 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 22 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 23 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 24 C -0.09 -2.35 8.23 -38.44 -0.32 -2.67 16 25 C -0.01 -0.13 11.42 -16.61 -0.19 -0.32 16 26 N -0.42 -4.90 3.17 -120.04 -0.38 -5.28 16 27 C 0.07 0.51 10.56 59.85 0.63 1.14 16 28 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.18 3.80 5.97 -52.48 -0.31 3.48 16 32 H 0.41 5.63 6.84 -40.82 -0.28 5.35 16 33 H 0.09 1.47 6.38 -52.48 -0.33 1.14 16 34 H 0.09 1.64 8.06 -52.49 -0.42 1.21 16 35 H 0.10 2.09 8.06 -52.49 -0.42 1.67 16 36 H 0.29 7.04 8.30 -40.82 -0.34 6.70 16 37 H 0.13 3.86 5.77 -52.49 -0.30 3.55 16 38 H 0.17 1.34 8.06 -52.49 -0.42 0.92 16 39 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.10 0.67 6.14 -51.93 -0.32 0.35 16 LS Contribution 355.42 15.07 5.36 5.36 Total: -1.00 -32.88 355.42 -7.50 -40.37 By element: Atomic # 1 Polarization: 15.44 SS G_CDS: -4.48 Total: 10.96 kcal Atomic # 6 Polarization: -4.45 SS G_CDS: -2.93 Total: -7.38 kcal Atomic # 7 Polarization: -36.76 SS G_CDS: 0.17 Total: -36.59 kcal Atomic # 8 Polarization: -25.99 SS G_CDS: -0.58 Total: -26.56 kcal Atomic # 14 Polarization: 18.88 SS G_CDS: -5.03 Total: 13.85 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -32.88 -7.50 -40.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000488244799.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.516 kcal (2) G-P(sol) polarization free energy of solvation -32.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds