Wall clock time and date at job start Tue Mar 31 2020 16:57:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34891 * 117.00382 * 2 1 4 4 O 1.21628 * 120.00400 * 359.97438 * 3 2 1 5 5 C 1.46468 * 120.00231 * 180.02562 * 3 2 1 6 6 C 1.38003 * 126.18242 * 180.02562 * 5 3 2 7 7 C 1.40167 * 107.10176 * 179.97438 * 6 5 3 8 8 N 1.40637 * 126.12165 * 179.97438 * 7 6 5 9 9 C 1.34781 * 120.00185 * 0.02562 * 8 7 6 10 10 O 1.21571 * 119.99775 * 359.97438 * 9 8 7 11 11 C 1.47860 * 119.99907 * 180.02562 * 9 8 7 12 12 C 1.39921 * 120.03244 * 359.97438 * 11 9 8 13 13 C 1.38330 * 120.36460 * 180.02562 * 12 11 9 14 14 C 1.37757 * 120.40513 * 359.97438 * 13 12 11 15 15 C 1.40742 * 120.04416 * 0.02562 * 14 13 12 16 16 C 1.41442 * 120.17642 * 180.02562 * 15 14 13 17 17 H 1.07999 * 119.99542 * 335.19709 * 16 15 14 18 18 C 1.39934 * 120.00391 * 155.20386 * 16 15 14 19 19 N 1.30832 * 119.99780 * 342.29141 * 18 16 15 20 20 Si 1.86793 * 120.00293 * 162.28977 * 18 16 15 21 21 H 1.48498 * 109.47018 * 60.00081 * 20 18 16 22 22 H 1.48499 * 109.47111 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47416 * 300.00115 * 20 18 16 24 24 C 1.39012 * 120.02190 * 179.97438 * 11 9 8 25 25 C 1.35974 * 107.76096 * 0.22506 * 7 6 5 26 26 N 1.35800 * 108.78447 * 359.63310 * 25 7 6 27 27 C 1.46497 * 125.64576 * 180.14526 * 26 25 7 28 28 H 1.08994 * 109.47608 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46589 * 300.00245 * 1 2 3 30 30 H 1.09003 * 109.47224 * 59.99817 * 1 2 3 31 31 H 1.08004 * 126.44777 * 359.97048 * 6 5 3 32 32 H 0.97010 * 120.00474 * 180.02562 * 8 7 6 33 33 H 1.08005 * 119.82261 * 359.97438 * 12 11 9 34 34 H 1.07999 * 119.79526 * 179.97438 * 13 12 11 35 35 H 1.07999 * 119.97322 * 180.02562 * 14 13 12 36 36 H 0.96997 * 120.00049 * 180.02562 * 19 18 16 37 37 H 1.07991 * 120.20151 * 0.25515 * 24 11 9 38 38 H 1.07990 * 125.60708 * 179.76804 * 25 7 6 39 39 H 1.09001 * 109.47225 * 270.26311 * 27 26 25 40 40 H 1.09004 * 109.47088 * 30.26534 * 27 26 25 41 41 H 1.09005 * 109.47445 * 150.26268 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0645 1.2018 0.0000 4 8 1.4022 2.2220 -0.0005 5 6 3.5271 1.2785 -0.0006 6 6 4.2825 2.4334 -0.0001 7 6 5.6293 2.0452 -0.0004 8 7 6.7406 2.9071 -0.0006 9 6 6.5578 4.2424 0.0000 10 8 5.4322 4.7018 0.0001 11 6 7.7262 5.1485 -0.0008 12 6 9.0220 4.6204 -0.0016 13 6 10.1200 5.4618 -0.0018 14 6 9.9508 6.8289 -0.0018 15 6 8.6551 7.3786 -0.0011 16 6 8.4781 8.7819 -0.0016 17 1 9.2532 9.4240 0.3898 18 6 7.2987 9.3382 -0.5092 19 7 6.5212 8.6274 -1.2850 20 14 6.8344 11.0957 -0.0790 21 1 7.8981 12.0182 -0.5506 22 1 5.5493 11.4433 -0.7371 23 1 6.6861 11.2224 1.3931 24 6 7.5383 6.5259 -0.0008 25 6 5.6691 0.6860 -0.0060 26 7 4.3968 0.2112 -0.0011 27 6 4.0132 -1.2026 -0.0016 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 3.9066 3.4459 0.0002 32 1 7.6388 2.5405 -0.0011 33 1 9.1657 3.5500 -0.0012 34 1 11.1160 5.0443 -0.0020 35 1 10.8129 7.4793 -0.0024 36 1 5.7038 9.0131 -1.6372 37 1 6.5401 6.9379 0.0039 38 1 6.5652 0.0833 -0.0111 39 1 3.9180 -1.5529 -1.0294 40 1 4.7770 -1.7866 0.5120 41 1 3.0591 -1.3205 0.5122 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000488244799.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:57:01 Heat of formation + Delta-G solvation = -64.974860 kcal Electronic energy + Delta-G solvation = -26543.887147 eV Core-core repulsion = 22581.976238 eV Total energy + Delta-G solvation = -3961.910909 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.68532 -41.20850 -40.57507 -38.81071 -37.60896 -36.02755 -35.53269 -33.26444 -31.87205 -31.26113 -30.72027 -28.43106 -27.41795 -26.96434 -24.97792 -24.00374 -22.83275 -21.86045 -21.43705 -20.66769 -19.54380 -19.16469 -18.14116 -17.65317 -17.61831 -17.01993 -16.58458 -16.48677 -16.34519 -16.31384 -15.70769 -15.46601 -15.07749 -14.87021 -14.43809 -14.37734 -14.32309 -14.17993 -13.55464 -13.50979 -13.35079 -13.26125 -12.94071 -12.87332 -12.80401 -12.51854 -12.20623 -11.95855 -11.91663 -11.83317 -11.66154 -11.50299 -11.06224 -10.70545 -9.64433 -9.51907 -9.37816 -8.71904 -8.64258 -6.37337 0.03963 0.32063 1.02346 1.35526 1.42195 1.46852 1.48790 1.52757 1.67272 1.91473 2.18303 2.31980 2.33945 2.81659 3.65537 3.71408 3.87440 4.03655 4.13826 4.26715 4.29504 4.35672 4.45348 4.52684 4.60755 4.64845 4.69574 4.82888 4.88640 4.95147 5.09194 5.14163 5.15762 5.23060 5.32932 5.52137 5.57387 5.84395 5.89270 5.94461 6.06616 6.18993 6.30414 6.53246 6.58683 6.70747 6.88591 6.95956 7.31775 8.30402 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.015603 B = 0.002846 C = 0.002427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1794.068218 B = 9835.141841 C =11535.278877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.350 6.350 3 C 0.541 3.459 4 O -0.540 6.540 5 C -0.060 4.060 6 C -0.134 4.134 7 C 0.028 3.972 8 N -0.628 5.628 9 C 0.556 3.444 10 O -0.572 6.572 11 C -0.135 4.135 12 C -0.194 4.194 13 C -0.094 4.094 14 C -0.215 4.215 15 C 0.065 3.935 16 C -0.498 4.498 17 H 0.085 0.915 18 C 0.028 3.972 19 N -0.826 5.826 20 Si 0.981 3.019 21 H -0.250 1.250 22 H -0.275 1.275 23 H -0.261 1.261 24 C -0.131 4.131 25 C 0.043 3.957 26 N -0.401 5.401 27 C 0.062 3.938 28 H 0.146 0.854 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.127 0.873 32 H 0.428 0.572 33 H 0.144 0.856 34 H 0.143 0.857 35 H 0.109 0.891 36 H 0.285 0.715 37 H 0.095 0.905 38 H 0.234 0.766 39 H 0.094 0.906 40 H 0.125 0.875 41 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.131 -24.541 2.130 24.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.266 6.266 3 C 0.388 3.612 4 O -0.431 6.431 5 C -0.171 4.171 6 C -0.163 4.163 7 C -0.071 4.071 8 N -0.274 5.274 9 C 0.347 3.653 10 O -0.452 6.452 11 C -0.138 4.138 12 C -0.213 4.213 13 C -0.112 4.112 14 C -0.234 4.234 15 C 0.063 3.937 16 C -0.527 4.527 17 H 0.103 0.897 18 C -0.187 4.187 19 N -0.452 5.452 20 Si 0.802 3.198 21 H -0.174 1.174 22 H -0.199 1.199 23 H -0.186 1.186 24 C -0.152 4.152 25 C -0.097 4.097 26 N -0.076 5.076 27 C -0.076 4.076 28 H 0.164 0.836 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.145 0.855 32 H 0.268 0.732 33 H 0.162 0.838 34 H 0.161 0.839 35 H 0.128 0.872 36 H 0.095 0.905 37 H 0.113 0.887 38 H 0.250 0.750 39 H 0.113 0.887 40 H 0.143 0.857 41 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -4.501 -24.319 1.978 24.811 hybrid contribution -0.514 1.557 -0.078 1.641 sum -5.015 -22.762 1.900 23.385 Atomic orbital electron populations 1.23632 0.74129 1.06240 1.02463 1.86567 1.25391 1.30346 1.84313 1.19822 0.86963 0.82030 0.72366 1.90914 1.66298 1.37466 1.48380 1.19062 0.87030 0.88061 1.22940 1.21537 0.92602 0.97516 1.04663 1.17168 0.86900 0.90706 1.12290 1.42552 1.08532 1.03834 1.72484 1.18867 0.88931 0.82478 0.75034 1.90653 1.26604 1.77147 1.50749 1.19641 0.93064 0.93073 1.08041 1.20904 0.90102 0.99582 1.10751 1.20956 0.98799 0.92670 0.98797 1.21431 0.95667 0.95756 1.10595 1.17944 0.91757 0.94030 0.89942 1.19838 1.02924 0.92429 1.37504 0.89671 1.26858 0.95071 1.04749 0.91979 1.69891 1.11908 1.40379 1.22974 0.85258 0.78397 0.76560 0.79589 1.17370 1.19934 1.18558 1.21429 0.99113 0.91790 1.02851 1.22082 0.88899 0.91378 1.07335 1.44048 1.04370 1.07276 1.51894 1.22679 1.04621 0.74693 1.05644 0.83650 0.92229 0.92300 0.85536 0.73223 0.83815 0.83909 0.87249 0.90450 0.88669 0.74992 0.88707 0.85690 0.88474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 10.57 113.37 1.20 1.60 16 2 O -0.35 -7.13 7.98 -58.06 -0.46 -7.59 16 3 C 0.54 16.44 7.92 69.97 0.55 17.00 16 4 O -0.54 -20.93 16.68 19.42 0.32 -20.61 16 5 C -0.06 -1.82 6.88 40.32 0.28 -1.54 16 6 C -0.13 -5.17 9.43 22.68 0.21 -4.96 16 7 C 0.03 0.88 6.91 37.67 0.26 1.14 16 8 N -0.63 -20.57 5.42 -306.60 -1.66 -22.23 16 9 C 0.56 25.39 7.74 86.79 0.67 26.07 16 10 O -0.57 -31.41 13.50 -3.94 -0.05 -31.46 16 11 C -0.13 -6.42 5.87 -20.14 -0.12 -6.54 16 12 C -0.19 -7.34 9.55 22.70 0.22 -7.13 16 13 C -0.09 -3.62 10.01 22.18 0.22 -3.40 16 14 C -0.21 -9.95 9.78 22.77 0.22 -9.73 16 15 C 0.07 3.60 5.57 -21.32 -0.12 3.48 16 16 C -0.50 -27.56 9.05 23.47 0.21 -27.35 16 17 H 0.09 4.42 7.91 -2.91 -0.02 4.40 16 18 C 0.03 1.52 5.14 85.25 0.44 1.96 16 19 N -0.83 -47.72 10.97 21.82 0.24 -47.48 16 20 Si 0.98 41.01 29.59 68.60 2.03 43.04 16 21 H -0.25 -9.72 7.11 99.48 0.71 -9.01 16 22 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 23 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 24 C -0.13 -7.44 8.23 23.01 0.19 -7.25 16 25 C 0.04 0.81 11.42 83.55 0.95 1.76 16 26 N -0.40 -7.88 3.17 -533.69 -1.69 -9.57 16 27 C 0.06 0.53 10.56 127.77 1.35 1.88 16 28 H 0.15 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.13 6.19 5.97 -2.91 -0.02 6.17 16 32 H 0.43 10.02 6.84 -92.70 -0.63 9.39 16 33 H 0.14 3.84 6.38 -2.91 -0.02 3.82 16 34 H 0.14 4.13 8.06 -2.91 -0.02 4.11 16 35 H 0.11 4.66 8.06 -2.91 -0.02 4.64 16 36 H 0.29 15.37 8.30 -92.71 -0.77 14.60 16 37 H 0.10 6.08 5.77 -2.91 -0.02 6.06 16 38 H 0.23 1.63 8.06 -2.92 -0.02 1.60 16 39 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 40 H 0.12 0.19 8.14 -2.38 -0.02 0.17 16 41 H 0.10 0.91 6.14 -2.38 -0.01 0.89 16 Total: -1.00 -85.33 355.42 5.93 -79.40 By element: Atomic # 1 Polarization: 29.05 SS G_CDS: 0.46 Total: 29.51 kcal Atomic # 6 Polarization: -19.76 SS G_CDS: 6.74 Total: -13.02 kcal Atomic # 7 Polarization: -76.17 SS G_CDS: -3.11 Total: -79.28 kcal Atomic # 8 Polarization: -59.47 SS G_CDS: -0.19 Total: -59.66 kcal Atomic # 14 Polarization: 41.01 SS G_CDS: 2.03 Total: 43.04 kcal Total: -85.33 5.93 -79.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000488244799.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.428 kcal (2) G-P(sol) polarization free energy of solvation -85.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds