Wall clock time and date at job start Tue Mar 31 2020 14:40:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35442 * 126.77903 * 2 1 4 4 C 1.41385 * 103.98944 * 180.02562 * 3 2 1 5 5 C 1.50691 * 126.80678 * 179.97438 * 4 3 2 6 6 N 1.46504 * 109.47390 * 95.00165 * 5 4 3 7 7 C 1.34772 * 120.00606 * 180.02562 * 6 5 4 8 8 O 1.21721 * 119.99474 * 359.97438 * 7 6 5 9 9 C 1.46251 * 120.00400 * 180.02562 * 7 6 5 10 10 C 1.35024 * 120.00158 * 173.06793 * 9 7 6 11 11 C 1.46959 * 119.99972 * 348.87015 * 10 9 7 12 12 C 1.40028 * 120.09993 * 311.82228 * 11 10 9 13 13 C 1.37601 * 119.89483 * 179.69965 * 12 11 10 14 14 C 1.39173 * 120.10144 * 0.59067 * 13 12 11 15 15 O 1.35574 * 119.90009 * 179.69756 * 14 13 12 16 16 C 1.34776 * 117.00116 * 185.62203 * 15 14 13 17 17 H 1.08003 * 119.99890 * 354.90199 * 16 15 14 18 18 C 1.38720 * 120.00019 * 174.91044 * 16 15 14 19 19 N 1.31509 * 119.99882 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 120.00131 * 179.97438 * 18 16 15 21 21 H 1.48495 * 109.47027 * 89.99403 * 20 18 16 22 22 H 1.48500 * 109.46996 * 210.00013 * 20 18 16 23 23 H 1.48503 * 109.46944 * 329.99831 * 20 18 16 24 24 C 1.39177 * 120.20436 * 359.68411 * 14 13 12 25 25 C 1.37604 * 120.10114 * 0.02562 * 24 14 13 26 26 N 1.30179 * 106.39309 * 0.26227 * 4 3 2 27 27 O 1.20932 * 111.60364 * 359.53411 * 26 4 3 28 28 H 1.09001 * 109.47081 * 89.99842 * 1 2 3 29 29 H 1.09003 * 109.47002 * 210.00336 * 1 2 3 30 30 H 1.09001 * 109.46850 * 330.00247 * 1 2 3 31 31 H 1.07999 * 128.00933 * 359.97438 * 3 2 1 32 32 H 1.09000 * 109.47561 * 335.00185 * 5 4 3 33 33 H 1.08997 * 109.47533 * 215.00309 * 5 4 3 34 34 H 0.97006 * 119.99664 * 359.97438 * 6 5 4 35 35 H 1.08007 * 119.99914 * 353.06527 * 9 7 6 36 36 H 1.08003 * 119.99777 * 168.59075 * 10 9 7 37 37 H 1.08002 * 120.05239 * 359.97438 * 12 11 10 38 38 H 1.07998 * 119.94517 * 180.26976 * 13 12 11 39 39 H 0.96995 * 119.99826 * 179.97438 * 19 18 16 40 40 H 1.07998 * 119.95042 * 179.97438 * 24 14 13 41 41 H 1.08001 * 120.05290 * 180.02562 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3180 1.0848 0.0000 4 6 3.6214 0.5372 -0.0006 5 6 4.9211 1.2998 -0.0014 6 7 5.4040 1.4433 1.3743 7 6 6.5576 2.0959 1.6190 8 8 7.1985 2.5656 0.6969 9 6 7.0399 2.2386 2.9923 10 6 8.2600 2.7669 3.2279 11 6 9.1993 2.9713 2.1163 12 6 9.4372 1.9402 1.1992 13 6 10.3128 2.1382 0.1565 14 6 10.9709 3.3569 0.0195 15 8 11.8374 3.5455 -1.0059 16 6 12.5292 4.7021 -1.0176 17 1 12.3212 5.4632 -0.2800 18 6 13.5081 4.9152 -1.9771 19 7 13.7615 3.9884 -2.8750 20 14 14.4665 6.5186 -1.9937 21 1 15.6779 6.3800 -1.1461 22 1 14.8705 6.8393 -3.3862 23 1 13.6126 7.6111 -1.4619 24 6 10.7420 4.3827 0.9319 25 6 9.8635 4.1957 1.9744 26 7 3.4764 -0.7565 -0.0066 27 8 2.3095 -1.0738 -0.0006 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3633 0.8900 0.5138 31 1 2.0346 2.1270 -0.0004 32 1 4.7630 2.2869 -0.4357 33 1 5.6602 0.7576 -0.5912 34 1 4.8931 1.0693 2.1091 35 1 6.4201 1.9215 3.8181 36 1 8.5439 3.0433 4.2326 37 1 8.9308 0.9924 1.3077 38 1 10.4935 1.3450 -0.5538 39 1 14.4458 4.1375 -3.5461 40 1 11.2552 5.3265 0.8219 41 1 9.6862 4.9924 2.6817 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491199484.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:53 Heat of formation + Delta-G solvation = 52.516891 kcal Electronic energy + Delta-G solvation = -25895.964490 eV Core-core repulsion = 21939.148406 eV Total energy + Delta-G solvation = -3956.816084 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -45.31735 -39.72686 -38.70793 -36.65591 -35.63142 -34.04514 -33.14591 -33.02933 -32.09838 -30.10338 -28.62067 -28.21956 -27.14211 -25.37269 -23.56108 -22.90612 -21.76307 -20.96957 -20.62004 -19.25823 -18.01335 -17.91274 -17.61355 -17.16251 -16.62909 -15.88253 -15.23425 -14.84911 -14.57924 -14.52326 -14.20992 -14.12205 -13.77837 -13.72071 -13.54815 -13.25600 -13.12683 -12.99074 -12.85378 -12.63135 -12.50985 -12.17174 -11.69006 -11.48855 -11.32781 -11.00895 -10.71625 -10.67423 -10.59718 -10.41014 -9.73786 -9.51291 -9.37452 -9.17802 -9.04091 -8.69533 -7.95456 -6.86799 -6.43526 -3.99460 1.07131 1.27253 1.72429 2.43522 2.66351 2.71089 3.14987 3.15956 3.20270 3.38679 3.59763 3.79054 3.98913 4.05555 4.60454 4.69897 4.76758 4.86069 4.89579 5.05164 5.15272 5.18553 5.20876 5.28240 5.35703 5.48936 5.54203 5.60846 5.69277 5.75327 5.86381 6.25837 6.33479 6.35790 6.45106 6.59490 6.80285 7.04978 7.13921 7.37261 7.45399 7.52215 7.59544 7.89377 7.93866 8.03071 8.48433 9.02088 9.74573 10.74422 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.019806 B = 0.002147 C = 0.002026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.367818 B =13036.057235 C =13818.613096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.035 4.035 3 C -0.221 4.221 4 C 0.003 3.997 5 C 0.202 3.798 6 N -0.733 5.733 7 C 0.541 3.459 8 O -0.508 6.508 9 C -0.262 4.262 10 C 0.028 3.972 11 C -0.183 4.183 12 C -0.001 4.001 13 C -0.198 4.198 14 C 0.169 3.831 15 O -0.173 6.173 16 C -0.390 4.390 17 H 0.093 0.907 18 C 0.038 3.962 19 N -0.860 5.860 20 Si 0.942 3.058 21 H -0.273 1.273 22 H -0.277 1.277 23 H -0.267 1.267 24 C -0.247 4.247 25 C -0.044 4.044 26 N -0.348 5.348 27 O 0.105 5.895 28 H 0.089 0.911 29 H 0.084 0.916 30 H 0.092 0.908 31 H 0.174 0.826 32 H 0.090 0.910 33 H 0.086 0.914 34 H 0.397 0.603 35 H 0.121 0.879 36 H 0.123 0.877 37 H 0.101 0.899 38 H 0.114 0.886 39 H 0.270 0.730 40 H 0.126 0.874 41 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.956 -5.300 10.566 27.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.099 4.099 3 C -0.243 4.243 4 C -0.156 4.156 5 C 0.078 3.922 6 N -0.388 5.388 7 C 0.331 3.669 8 O -0.383 6.383 9 C -0.283 4.283 10 C 0.008 3.992 11 C -0.184 4.184 12 C -0.019 4.019 13 C -0.217 4.217 14 C 0.114 3.886 15 O -0.076 6.076 16 C -0.466 4.466 17 H 0.111 0.889 18 C -0.166 4.166 19 N -0.495 5.495 20 Si 0.767 3.233 21 H -0.198 1.198 22 H -0.203 1.203 23 H -0.192 1.192 24 C -0.266 4.266 25 C -0.062 4.062 26 N -0.050 5.050 27 O 0.035 5.965 28 H 0.107 0.893 29 H 0.103 0.897 30 H 0.111 0.889 31 H 0.191 0.809 32 H 0.108 0.892 33 H 0.104 0.896 34 H 0.230 0.770 35 H 0.139 0.861 36 H 0.141 0.859 37 H 0.119 0.881 38 H 0.132 0.868 39 H 0.080 0.920 40 H 0.144 0.856 41 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -23.369 -6.142 9.427 25.937 hybrid contribution -0.323 1.406 0.342 1.482 sum -23.692 -4.736 9.769 26.061 Atomic orbital electron populations 1.20354 0.83844 1.04727 1.04253 1.24556 0.96498 0.86094 1.02726 1.22473 0.91101 1.01220 1.09530 1.23603 0.97343 0.90114 1.04491 1.19379 0.88627 0.98916 0.85281 1.45924 1.25590 1.59516 1.07756 1.18495 0.79960 0.78082 0.90339 1.91018 1.54944 1.46568 1.45781 1.22591 0.98891 1.11855 0.94927 1.22353 0.91164 0.87871 0.97773 1.18284 1.03973 0.96360 0.99753 1.20436 0.93142 0.96678 0.91676 1.20008 1.03710 0.96407 1.01597 1.19523 0.89369 0.92802 0.86871 1.83909 1.46312 1.38979 1.38395 1.21386 1.16298 0.92577 1.16337 0.88916 1.25327 0.96688 0.99407 0.95201 1.70024 1.30907 1.33223 1.15319 0.85695 0.79539 0.80085 0.78021 1.19849 1.20261 1.19156 1.20961 1.05731 1.00696 0.99193 1.20714 0.93852 0.95157 0.96481 1.73937 0.96839 1.16332 1.17906 1.84859 1.11289 1.33279 1.67024 0.89283 0.89746 0.88948 0.80899 0.89154 0.89630 0.77003 0.86099 0.85937 0.88098 0.86809 0.91981 0.85630 0.87609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.21 10.45 36.01 0.38 0.17 16 2 C -0.04 -0.25 7.49 -35.30 -0.26 -0.51 16 3 C -0.22 -1.74 11.06 -39.38 -0.44 -2.17 16 4 C 0.00 0.03 6.70 -82.10 -0.55 -0.52 16 5 C 0.20 2.39 6.26 -5.20 -0.03 2.36 16 6 N -0.73 -8.59 5.54 -62.94 -0.35 -8.94 16 7 C 0.54 8.08 6.95 -13.04 -0.09 7.99 16 8 O -0.51 -9.92 12.48 5.17 0.06 -9.86 16 9 C -0.26 -3.32 9.92 -37.51 -0.37 -3.69 16 10 C 0.03 0.39 9.77 -37.19 -0.36 0.03 16 11 C -0.18 -3.41 4.34 -105.03 -0.46 -3.86 16 12 C 0.00 -0.02 6.77 -39.14 -0.27 -0.28 16 13 C -0.20 -4.62 9.97 -39.47 -0.39 -5.01 16 14 C 0.17 4.36 6.66 -38.89 -0.26 4.10 16 15 O -0.17 -5.16 9.74 0.74 0.01 -5.15 16 16 C -0.39 -11.21 9.48 30.91 0.29 -10.91 16 17 H 0.09 2.47 5.18 -52.48 -0.27 2.19 16 18 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 19 N -0.86 -25.74 13.67 55.48 0.76 -24.98 16 20 Si 0.94 20.90 29.55 -169.99 -5.02 15.88 16 21 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 22 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 23 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 24 C -0.25 -5.69 9.14 -39.46 -0.36 -6.05 16 25 C -0.04 -0.86 9.78 -39.14 -0.38 -1.24 16 26 N -0.35 -4.12 12.07 33.43 0.40 -3.72 16 27 O 0.11 1.03 11.20 17.16 0.19 1.23 16 28 H 0.09 0.16 8.14 -51.93 -0.42 -0.26 16 29 H 0.08 0.16 8.14 -51.93 -0.42 -0.27 16 30 H 0.09 0.12 8.14 -51.93 -0.42 -0.30 16 31 H 0.17 0.97 8.06 -52.49 -0.42 0.55 16 32 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.40 3.70 8.44 -40.82 -0.34 3.35 16 35 H 0.12 1.10 8.06 -52.48 -0.42 0.67 16 36 H 0.12 1.32 8.06 -52.48 -0.42 0.90 16 37 H 0.10 1.87 7.46 -52.49 -0.39 1.48 16 38 H 0.11 2.60 8.06 -52.49 -0.42 2.18 16 39 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 40 H 0.13 2.86 5.62 -52.49 -0.29 2.57 16 41 H 0.11 1.73 8.06 -52.49 -0.42 1.31 16 LS Contribution 361.83 15.07 5.45 5.45 Total: -1.00 -35.51 361.83 -6.81 -42.33 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: -4.67 Total: 6.40 kcal Atomic # 6 Polarization: -14.98 SS G_CDS: -3.65 Total: -18.63 kcal Atomic # 7 Polarization: -38.45 SS G_CDS: 0.81 Total: -37.64 kcal Atomic # 8 Polarization: -14.05 SS G_CDS: 0.26 Total: -13.79 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -35.51 -6.81 -42.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491199484.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.842 kcal (2) G-P(sol) polarization free energy of solvation -35.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.325 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds