Wall clock time and date at job start Tue Mar 31 2020 14:40:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35442 * 126.77903 * 2 1 4 4 C 1.41385 * 103.98944 * 180.02562 * 3 2 1 5 5 C 1.50691 * 126.80678 * 179.97438 * 4 3 2 6 6 N 1.46504 * 109.47390 * 95.00165 * 5 4 3 7 7 C 1.34772 * 120.00606 * 180.02562 * 6 5 4 8 8 O 1.21721 * 119.99474 * 359.97438 * 7 6 5 9 9 C 1.46251 * 120.00400 * 180.02562 * 7 6 5 10 10 C 1.35024 * 120.00158 * 173.06793 * 9 7 6 11 11 C 1.46959 * 119.99972 * 348.87015 * 10 9 7 12 12 C 1.40028 * 120.09993 * 311.82228 * 11 10 9 13 13 C 1.37601 * 119.89483 * 179.69965 * 12 11 10 14 14 C 1.39173 * 120.10144 * 0.59067 * 13 12 11 15 15 O 1.35574 * 119.90009 * 179.69756 * 14 13 12 16 16 C 1.34776 * 117.00116 * 185.62203 * 15 14 13 17 17 H 1.08003 * 119.99890 * 354.90199 * 16 15 14 18 18 C 1.38720 * 120.00019 * 174.91044 * 16 15 14 19 19 N 1.31509 * 119.99882 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 120.00131 * 179.97438 * 18 16 15 21 21 H 1.48495 * 109.47027 * 89.99403 * 20 18 16 22 22 H 1.48500 * 109.46996 * 210.00013 * 20 18 16 23 23 H 1.48503 * 109.46944 * 329.99831 * 20 18 16 24 24 C 1.39177 * 120.20436 * 359.68411 * 14 13 12 25 25 C 1.37604 * 120.10114 * 0.02562 * 24 14 13 26 26 N 1.30179 * 106.39309 * 0.26227 * 4 3 2 27 27 O 1.20932 * 111.60364 * 359.53411 * 26 4 3 28 28 H 1.09001 * 109.47081 * 89.99842 * 1 2 3 29 29 H 1.09003 * 109.47002 * 210.00336 * 1 2 3 30 30 H 1.09001 * 109.46850 * 330.00247 * 1 2 3 31 31 H 1.07999 * 128.00933 * 359.97438 * 3 2 1 32 32 H 1.09000 * 109.47561 * 335.00185 * 5 4 3 33 33 H 1.08997 * 109.47533 * 215.00309 * 5 4 3 34 34 H 0.97006 * 119.99664 * 359.97438 * 6 5 4 35 35 H 1.08007 * 119.99914 * 353.06527 * 9 7 6 36 36 H 1.08003 * 119.99777 * 168.59075 * 10 9 7 37 37 H 1.08002 * 120.05239 * 359.97438 * 12 11 10 38 38 H 1.07998 * 119.94517 * 180.26976 * 13 12 11 39 39 H 0.96995 * 119.99826 * 179.97438 * 19 18 16 40 40 H 1.07998 * 119.95042 * 179.97438 * 24 14 13 41 41 H 1.08001 * 120.05290 * 180.02562 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3180 1.0848 0.0000 4 6 3.6214 0.5372 -0.0006 5 6 4.9211 1.2998 -0.0014 6 7 5.4040 1.4433 1.3743 7 6 6.5576 2.0959 1.6190 8 8 7.1985 2.5656 0.6969 9 6 7.0399 2.2386 2.9923 10 6 8.2600 2.7669 3.2279 11 6 9.1993 2.9713 2.1163 12 6 9.4372 1.9402 1.1992 13 6 10.3128 2.1382 0.1565 14 6 10.9709 3.3569 0.0195 15 8 11.8374 3.5455 -1.0059 16 6 12.5292 4.7021 -1.0176 17 1 12.3212 5.4632 -0.2800 18 6 13.5081 4.9152 -1.9771 19 7 13.7615 3.9884 -2.8750 20 14 14.4665 6.5186 -1.9937 21 1 15.6779 6.3800 -1.1461 22 1 14.8705 6.8393 -3.3862 23 1 13.6126 7.6111 -1.4619 24 6 10.7420 4.3827 0.9319 25 6 9.8635 4.1957 1.9744 26 7 3.4764 -0.7565 -0.0066 27 8 2.3095 -1.0738 -0.0006 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3633 0.8900 0.5138 31 1 2.0346 2.1270 -0.0004 32 1 4.7630 2.2869 -0.4357 33 1 5.6602 0.7576 -0.5912 34 1 4.8931 1.0693 2.1091 35 1 6.4201 1.9215 3.8181 36 1 8.5439 3.0433 4.2326 37 1 8.9308 0.9924 1.3077 38 1 10.4935 1.3450 -0.5538 39 1 14.4458 4.1375 -3.5461 40 1 11.2552 5.3265 0.8219 41 1 9.6862 4.9924 2.6817 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491199484.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:52 Heat of formation + Delta-G solvation = 27.688080 kcal Electronic energy + Delta-G solvation = -25897.041148 eV Core-core repulsion = 21939.148406 eV Total energy + Delta-G solvation = -3957.892742 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -46.05352 -41.10332 -40.41179 -38.30003 -36.71625 -34.69798 -34.60733 -34.04856 -33.83443 -31.83441 -30.01964 -28.74474 -28.29240 -27.34862 -24.53965 -24.01200 -23.49428 -22.44969 -21.45463 -20.47542 -19.77090 -18.91150 -18.77165 -18.29874 -18.04579 -16.99311 -16.43394 -16.37649 -16.14642 -15.91852 -15.53264 -15.30369 -15.22211 -14.68970 -14.56546 -14.54081 -14.26300 -13.95007 -13.90378 -13.76037 -13.71618 -13.57295 -13.18838 -13.00620 -12.64701 -12.38863 -12.23813 -12.16415 -12.12942 -11.52515 -11.23543 -10.94881 -10.68429 -10.43890 -10.31724 -10.14638 -9.64958 -8.59929 -8.48631 -6.15926 0.01142 0.42117 0.69423 1.00981 1.06549 1.33401 1.45147 1.52063 2.16273 2.17172 2.39937 2.41796 2.85604 2.99308 3.21191 3.42121 3.49620 3.93865 4.02848 4.05561 4.12577 4.15476 4.23220 4.26913 4.51973 4.54639 4.58110 4.61157 4.75580 4.75957 4.91145 4.94836 5.04529 5.08625 5.23482 5.24645 5.26232 5.32901 5.43686 5.66041 5.71596 5.80952 6.02009 6.23794 6.57796 6.95219 7.20913 7.34032 7.77658 8.74814 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.019806 B = 0.002147 C = 0.002026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.367818 B =13036.057235 C =13818.613096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.023 4.023 3 C -0.226 4.226 4 C -0.008 4.008 5 C 0.205 3.795 6 N -0.713 5.713 7 C 0.530 3.470 8 O -0.563 6.563 9 C -0.227 4.227 10 C 0.008 3.992 11 C -0.152 4.152 12 C -0.001 4.001 13 C -0.217 4.217 14 C 0.124 3.876 15 O -0.232 6.232 16 C -0.415 4.415 17 H 0.103 0.897 18 C -0.026 4.026 19 N -0.922 5.922 20 Si 1.023 2.977 21 H -0.260 1.260 22 H -0.271 1.271 23 H -0.252 1.252 24 C -0.254 4.254 25 C -0.048 4.048 26 N -0.384 5.384 27 O 0.097 5.903 28 H 0.102 0.898 29 H 0.096 0.904 30 H 0.113 0.887 31 H 0.196 0.804 32 H 0.091 0.909 33 H 0.059 0.941 34 H 0.412 0.588 35 H 0.174 0.826 36 H 0.173 0.827 37 H 0.118 0.882 38 H 0.100 0.900 39 H 0.273 0.727 40 H 0.121 0.879 41 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.659 -4.289 14.481 32.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.086 4.086 3 C -0.248 4.248 4 C -0.166 4.166 5 C 0.081 3.919 6 N -0.368 5.368 7 C 0.321 3.679 8 O -0.442 6.442 9 C -0.248 4.248 10 C -0.011 4.011 11 C -0.153 4.153 12 C -0.019 4.019 13 C -0.236 4.236 14 C 0.074 3.926 15 O -0.139 6.139 16 C -0.491 4.491 17 H 0.121 0.879 18 C -0.223 4.223 19 N -0.560 5.560 20 Si 0.842 3.158 21 H -0.185 1.185 22 H -0.195 1.195 23 H -0.175 1.175 24 C -0.273 4.273 25 C -0.066 4.066 26 N -0.087 5.087 27 O 0.028 5.972 28 H 0.121 0.879 29 H 0.114 0.886 30 H 0.132 0.868 31 H 0.214 0.786 32 H 0.110 0.890 33 H 0.077 0.923 34 H 0.249 0.751 35 H 0.191 0.809 36 H 0.190 0.810 37 H 0.136 0.864 38 H 0.118 0.882 39 H 0.082 0.918 40 H 0.139 0.861 41 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -27.165 -5.174 13.418 30.737 hybrid contribution 0.303 0.858 -0.625 1.104 sum -26.863 -4.316 12.793 30.064 Atomic orbital electron populations 1.20616 0.80569 1.06355 1.05564 1.25339 0.98053 0.84906 1.00343 1.22741 0.89746 1.02589 1.09760 1.23527 0.97675 0.90108 1.05286 1.19230 0.88862 0.98821 0.85013 1.45772 1.24707 1.57970 1.08322 1.19126 0.80182 0.77570 0.91033 1.91027 1.56563 1.49039 1.47620 1.23031 0.98880 1.08149 0.94717 1.22603 0.90828 0.89631 0.98040 1.18866 1.02344 0.94741 0.99349 1.20665 0.92088 0.98146 0.91051 1.20180 1.04835 0.95736 1.02893 1.19998 0.90213 0.94611 0.87813 1.83878 1.48835 1.40079 1.41067 1.21895 1.17038 0.92982 1.17174 0.87925 1.26707 0.97494 1.03750 0.94367 1.70183 1.32633 1.36200 1.16952 0.84532 0.77957 0.74876 0.78454 1.18521 1.19538 1.17548 1.21113 1.06640 0.99779 0.99757 1.21169 0.92726 0.96788 0.95948 1.73934 0.98102 1.17095 1.19598 1.84817 1.11032 1.34361 1.66986 0.87941 0.88572 0.86836 0.78642 0.89048 0.92280 0.75129 0.80856 0.81003 0.86448 0.88215 0.91787 0.86100 0.83274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.15 10.45 71.24 0.74 0.60 16 2 C -0.02 -0.27 7.49 25.04 0.19 -0.08 16 3 C -0.23 -3.04 11.06 22.40 0.25 -2.79 16 4 C -0.01 -0.17 6.70 43.58 0.29 0.13 16 5 C 0.21 4.78 6.26 85.63 0.54 5.32 16 6 N -0.71 -15.07 5.54 -471.26 -2.61 -17.68 16 7 C 0.53 14.37 6.95 86.33 0.60 14.97 16 8 O -0.56 -21.63 12.48 -4.42 -0.06 -21.69 16 9 C -0.23 -4.50 9.92 23.61 0.23 -4.26 16 10 C 0.01 0.19 9.77 23.82 0.23 0.42 16 11 C -0.15 -5.31 4.34 -20.13 -0.09 -5.40 16 12 C 0.00 -0.05 6.77 22.55 0.15 0.10 16 13 C -0.22 -10.81 9.97 22.34 0.22 -10.59 16 14 C 0.12 6.87 6.66 22.72 0.15 7.02 16 15 O -0.23 -15.07 9.74 -20.26 -0.20 -15.26 16 16 C -0.41 -25.49 9.48 67.94 0.64 -24.85 16 17 H 0.10 5.77 5.18 -2.91 -0.02 5.76 16 18 C -0.03 -1.54 5.49 84.86 0.47 -1.08 16 19 N -0.92 -58.99 13.67 21.62 0.30 -58.70 16 20 Si 1.02 44.47 29.55 68.60 2.03 46.49 16 21 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 22 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 23 H -0.25 -10.15 7.11 99.48 0.71 -9.44 16 24 C -0.25 -12.05 9.14 22.35 0.20 -11.84 16 25 C -0.05 -1.81 9.78 22.55 0.22 -1.59 16 26 N -0.38 -8.88 12.07 -49.53 -0.60 -9.48 16 27 O 0.10 1.79 11.20 71.56 0.80 2.59 16 28 H 0.10 0.02 8.14 -2.39 -0.02 0.00 16 29 H 0.10 0.02 8.14 -2.39 -0.02 0.00 16 30 H 0.11 -0.19 8.14 -2.39 -0.02 -0.21 16 31 H 0.20 1.58 8.06 -2.91 -0.02 1.56 16 32 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 33 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.41 6.23 8.44 -92.70 -0.78 5.45 16 35 H 0.17 1.76 8.06 -2.91 -0.02 1.73 16 36 H 0.17 2.40 8.06 -2.91 -0.02 2.38 16 37 H 0.12 4.29 7.46 -2.91 -0.02 4.27 16 38 H 0.10 5.04 8.06 -2.91 -0.02 5.02 16 39 H 0.27 15.93 8.31 -92.71 -0.77 15.16 16 40 H 0.12 5.72 5.62 -2.91 -0.02 5.70 16 41 H 0.15 4.26 8.06 -2.91 -0.02 4.24 16 Total: -1.00 -87.82 361.83 5.01 -82.81 By element: Atomic # 1 Polarization: 24.54 SS G_CDS: 0.30 Total: 24.84 kcal Atomic # 6 Polarization: -38.97 SS G_CDS: 5.05 Total: -33.92 kcal Atomic # 7 Polarization: -82.95 SS G_CDS: -2.91 Total: -85.86 kcal Atomic # 8 Polarization: -34.91 SS G_CDS: 0.55 Total: -34.36 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.49 kcal Total: -87.82 5.01 -82.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491199484.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.497 kcal (2) G-P(sol) polarization free energy of solvation -87.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.809 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds