Wall clock time and date at job start Tue Mar 31 2020 14:42:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30167 * 126.80948 * 2 1 4 4 O 1.20894 * 111.75862 * 179.97438 * 3 2 1 5 5 C 1.34281 * 111.64030 * 359.72492 * 4 3 2 6 6 C 1.50693 * 126.82852 * 180.32697 * 5 4 3 7 7 C 1.35915 * 106.34529 * 0.44101 * 5 4 3 8 8 N 1.40621 * 128.05936 * 179.85826 * 7 5 4 9 9 C 1.34774 * 119.99899 * 139.68138 * 8 7 5 10 10 O 1.21746 * 120.00040 * 5.98990 * 9 8 7 11 11 C 1.46240 * 119.99615 * 185.98898 * 9 8 7 12 12 C 1.35031 * 119.99737 * 180.02562 * 11 9 8 13 13 C 1.46956 * 119.99858 * 179.72453 * 12 11 9 14 14 C 1.40022 * 120.10227 * 359.72221 * 13 12 11 15 15 C 1.37606 * 119.89487 * 179.76501 * 14 13 12 16 16 C 1.39177 * 120.10157 * 0.51301 * 15 14 13 17 17 O 1.35572 * 119.89632 * 179.76389 * 16 15 14 18 18 C 1.34780 * 116.99703 * 174.35031 * 17 16 15 19 19 H 1.07998 * 120.00058 * 5.08993 * 18 17 16 20 20 C 1.38718 * 119.99717 * 185.08756 * 18 17 16 21 21 N 1.31516 * 120.00111 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00079 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.46816 * 0.02562 * 22 20 18 24 24 H 1.48499 * 109.47253 * 120.00171 * 22 20 18 25 25 H 1.48505 * 109.47285 * 240.00275 * 22 20 18 26 26 C 1.39168 * 120.20330 * 359.73718 * 16 15 14 27 27 C 1.37605 * 120.10256 * 0.02562 * 26 16 15 28 28 H 1.08995 * 109.47213 * 277.01244 * 1 2 3 29 29 H 1.09000 * 109.47397 * 37.01812 * 1 2 3 30 30 H 1.09003 * 109.47100 * 157.01251 * 1 2 3 31 31 H 1.08999 * 109.47391 * 275.07286 * 6 5 4 32 32 H 1.09012 * 109.46726 * 35.07333 * 6 5 4 33 33 H 1.09000 * 109.47401 * 155.06860 * 6 5 4 34 34 H 0.97002 * 119.99556 * 319.67489 * 8 7 5 35 35 H 1.07999 * 120.00266 * 359.72516 * 11 9 8 36 36 H 1.07999 * 119.99939 * 359.72271 * 12 11 9 37 37 H 1.07995 * 120.05298 * 0.02562 * 14 13 12 38 38 H 1.08001 * 119.94594 * 180.22930 * 15 14 13 39 39 H 0.96996 * 119.99697 * 180.02562 * 21 20 18 40 40 H 1.08005 * 119.94892 * 179.97438 * 26 16 15 41 41 H 1.08005 * 120.05027 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2869 1.0422 0.0000 4 8 3.4543 0.7282 0.0005 5 6 3.6084 -0.6057 0.0069 6 6 4.9103 -1.3646 0.0164 7 6 2.3568 -1.1354 0.0006 8 7 1.9899 -2.4929 0.0008 9 6 0.9506 -2.9099 0.7508 10 8 0.2620 -2.0983 1.3418 11 6 0.6501 -4.3373 0.8544 12 6 -0.3915 -4.7551 1.6054 13 6 -0.6972 -6.1891 1.7047 14 6 0.0866 -7.1236 1.0170 15 6 -0.2005 -8.4656 1.1169 16 6 -1.2745 -8.8939 1.8915 17 8 -1.5565 -10.2168 1.9832 18 6 -2.5335 -10.5762 2.8393 19 1 -3.1075 -9.8188 3.3524 20 6 -2.8017 -11.9189 3.0613 21 7 -2.1024 -12.8412 2.4369 22 14 -4.1562 -12.4172 4.2473 23 1 -4.7890 -11.1998 4.8156 24 1 -5.1790 -13.2145 3.5239 25 1 -3.5777 -13.2332 5.3450 26 6 -2.0595 -7.9684 2.5727 27 6 -1.7770 -6.6246 2.4826 28 1 -0.3633 0.1255 1.0199 29 1 -0.3634 0.8205 -0.6187 30 1 -0.3633 -0.9461 -0.4013 31 1 5.2749 -1.4734 -1.0051 32 1 5.6450 -0.8183 0.6082 33 1 4.7529 -2.3508 0.4530 34 1 2.4848 -3.1291 -0.5389 35 1 1.2582 -5.0570 0.3265 36 1 -0.9998 -4.0355 2.1330 37 1 0.9178 -6.7919 0.4124 38 1 0.4058 -9.1874 0.5897 39 1 -2.2903 -13.7801 2.5919 40 1 -2.8923 -8.3052 3.1723 41 1 -2.3865 -5.9071 3.0119 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491352391.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:39 Heat of formation + Delta-G solvation = 37.555083 kcal Electronic energy + Delta-G solvation = -25627.283032 eV Core-core repulsion = 21669.818155 eV Total energy + Delta-G solvation = -3957.464877 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 3.24 seconds Orbital eigenvalues (eV) -45.09995 -39.95493 -39.22841 -37.03087 -35.85003 -34.17855 -33.32393 -32.63197 -32.27301 -30.50632 -28.71414 -28.56557 -27.68458 -25.79393 -24.31130 -22.51957 -22.08619 -21.08173 -20.58606 -19.35721 -18.28588 -17.91164 -17.88778 -17.15251 -17.09636 -16.06072 -15.16952 -15.13210 -14.87532 -14.50379 -14.27005 -14.09136 -13.90295 -13.67369 -13.56559 -13.25591 -13.19701 -13.10868 -12.71078 -12.68722 -12.58139 -12.03309 -11.87231 -11.80382 -11.60477 -11.19963 -11.16415 -10.84072 -10.72687 -10.58059 -9.96802 -9.79549 -9.69909 -9.56753 -8.95740 -8.71226 -8.45915 -7.20480 -6.71969 -4.26353 0.85253 1.21274 1.97187 2.06635 2.45791 2.55154 2.99089 3.00633 3.06545 3.16447 3.41088 3.76731 4.13736 4.19221 4.43060 4.60539 4.83851 4.85502 4.96311 5.01685 5.02166 5.13956 5.18007 5.41524 5.44929 5.47806 5.52366 5.57793 5.58312 5.70566 5.93421 6.01905 6.10529 6.21684 6.36735 6.38270 6.51279 6.70649 6.84204 7.05015 7.13890 7.18575 7.24787 7.56150 7.73456 8.06596 8.08666 8.72791 9.38926 10.44442 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.034518 B = 0.001824 C = 0.001756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.973593 B =15347.736043 C =15940.262338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.037 3.963 3 N -0.363 5.363 4 O 0.101 5.899 5 C -0.063 4.063 6 C -0.069 4.069 7 C 0.040 3.960 8 N -0.646 5.646 9 C 0.557 3.443 10 O -0.534 6.534 11 C -0.289 4.289 12 C 0.050 3.950 13 C -0.204 4.204 14 C -0.041 4.041 15 C -0.200 4.200 16 C 0.168 3.832 17 O -0.160 6.160 18 C -0.393 4.393 19 H 0.099 0.901 20 C 0.041 3.959 21 N -0.850 5.850 22 Si 0.946 3.054 23 H -0.264 1.264 24 H -0.273 1.273 25 H -0.273 1.273 26 C -0.243 4.243 27 C -0.032 4.032 28 H 0.087 0.913 29 H 0.063 0.937 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.088 0.912 34 H 0.414 0.586 35 H 0.127 0.873 36 H 0.124 0.876 37 H 0.118 0.882 38 H 0.121 0.879 39 H 0.274 0.726 40 H 0.132 0.868 41 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.533 17.110 -5.006 20.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.123 4.123 3 N -0.070 5.070 4 O 0.039 5.961 5 C -0.129 4.129 6 C -0.127 4.127 7 C -0.058 4.058 8 N -0.295 5.295 9 C 0.351 3.649 10 O -0.412 6.412 11 C -0.310 4.310 12 C 0.031 3.969 13 C -0.205 4.205 14 C -0.059 4.059 15 C -0.219 4.219 16 C 0.111 3.889 17 O -0.061 6.061 18 C -0.468 4.468 19 H 0.116 0.884 20 C -0.165 4.165 21 N -0.482 5.482 22 Si 0.770 3.230 23 H -0.188 1.188 24 H -0.199 1.199 25 H -0.199 1.199 26 C -0.262 4.262 27 C -0.050 4.050 28 H 0.105 0.895 29 H 0.082 0.918 30 H 0.097 0.903 31 H 0.105 0.895 32 H 0.105 0.895 33 H 0.107 0.893 34 H 0.251 0.749 35 H 0.144 0.856 36 H 0.142 0.858 37 H 0.136 0.864 38 H 0.139 0.861 39 H 0.084 0.916 40 H 0.149 0.851 41 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 8.913 18.451 -4.685 21.019 hybrid contribution -0.457 -1.467 0.291 1.564 sum 8.456 16.984 -4.394 19.474 Atomic orbital electron populations 1.20145 0.85153 1.02549 1.03617 1.23505 0.99335 0.87487 1.01994 1.73808 0.89195 1.23472 1.20568 1.84847 1.21407 1.21349 1.68526 1.23987 0.97308 0.84368 1.07258 1.20282 0.89893 0.98544 1.03950 1.18088 0.91417 0.86706 1.09625 1.42676 1.34556 1.04529 1.47769 1.18590 0.78815 0.89845 0.77646 1.90826 1.48801 1.55764 1.45801 1.22237 1.05173 0.92427 1.11131 1.22310 0.91436 0.94192 0.88987 1.18424 1.02175 0.91540 1.08376 1.20876 0.97102 0.91813 0.96093 1.20159 0.99928 0.95570 1.06266 1.19622 0.92054 0.84887 0.92341 1.83901 1.49857 1.17936 1.54367 1.21547 1.11342 0.92729 1.21178 0.88395 1.25422 0.98721 0.94438 0.97936 1.70021 1.37882 1.01265 1.39029 0.85569 0.79151 0.79275 0.79047 1.18816 1.19870 1.19853 1.21107 1.04519 0.92849 1.07729 1.20996 0.94359 0.95049 0.94627 0.89468 0.91795 0.90322 0.89548 0.89533 0.89285 0.74937 0.85567 0.85803 0.86378 0.86076 0.91552 0.85067 0.86766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.69 8.52 36.00 0.31 -0.39 16 2 C 0.04 0.49 6.99 -81.93 -0.57 -0.08 16 3 N -0.36 -4.87 12.06 33.57 0.40 -4.46 16 4 O 0.10 1.17 11.20 16.54 0.19 1.36 16 5 C -0.06 -0.59 7.52 -35.14 -0.26 -0.86 16 6 C -0.07 -0.34 10.45 36.00 0.38 0.03 16 7 C 0.04 0.46 6.69 -83.29 -0.56 -0.10 16 8 N -0.65 -6.40 5.46 -10.94 -0.06 -6.46 16 9 C 0.56 6.99 7.25 -13.05 -0.09 6.90 16 10 O -0.53 -8.22 12.20 5.15 0.06 -8.16 16 11 C -0.29 -3.45 9.41 -37.51 -0.35 -3.80 16 12 C 0.05 0.69 9.45 -37.19 -0.35 0.34 16 13 C -0.20 -3.23 5.87 -105.03 -0.62 -3.84 16 14 C -0.04 -0.64 9.40 -39.14 -0.37 -1.01 16 15 C -0.20 -3.80 9.97 -39.46 -0.39 -4.19 16 16 C 0.17 3.71 6.66 -38.89 -0.26 3.45 16 17 O -0.16 -4.22 9.74 0.74 0.01 -4.21 16 18 C -0.39 -10.16 9.48 30.91 0.29 -9.86 16 19 H 0.10 2.33 5.18 -52.49 -0.27 2.05 16 20 C 0.04 1.06 5.49 -17.51 -0.10 0.96 16 21 N -0.85 -23.26 13.67 55.48 0.76 -22.50 16 22 Si 0.95 19.07 29.55 -169.99 -5.02 14.05 16 23 H -0.26 -5.10 7.11 56.52 0.40 -4.69 16 24 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 25 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 26 C -0.24 -4.82 9.14 -39.47 -0.36 -5.18 16 27 C -0.03 -0.54 9.78 -39.14 -0.38 -0.92 16 28 H 0.09 1.13 7.60 -51.93 -0.39 0.73 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.08 0.98 6.76 -51.93 -0.35 0.62 16 31 H 0.09 0.28 8.14 -51.93 -0.42 -0.15 16 32 H 0.09 0.34 8.14 -51.92 -0.42 -0.08 16 33 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.41 2.70 8.81 -40.82 -0.36 2.34 16 35 H 0.13 1.24 6.07 -52.49 -0.32 0.92 16 36 H 0.12 1.68 7.52 -52.49 -0.39 1.28 16 37 H 0.12 1.47 6.16 -52.49 -0.32 1.15 16 38 H 0.12 2.19 8.06 -52.49 -0.42 1.77 16 39 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 40 H 0.13 2.59 5.62 -52.48 -0.29 2.30 16 41 H 0.11 1.61 8.06 -52.48 -0.42 1.19 16 LS Contribution 358.00 15.07 5.40 5.40 Total: -1.00 -31.11 358.00 -6.34 -37.45 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: -4.38 Total: 6.10 kcal Atomic # 6 Polarization: -14.86 SS G_CDS: -3.69 Total: -18.55 kcal Atomic # 7 Polarization: -34.53 SS G_CDS: 1.10 Total: -33.43 kcal Atomic # 8 Polarization: -11.27 SS G_CDS: 0.26 Total: -11.01 kcal Atomic # 14 Polarization: 19.07 SS G_CDS: -5.02 Total: 14.05 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -31.11 -6.34 -37.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491352391.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.003 kcal (2) G-P(sol) polarization free energy of solvation -31.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.448 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.24 seconds