Wall clock time and date at job start Tue Mar 31 2020 14:42:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30167 * 126.80948 * 2 1 4 4 O 1.20894 * 111.75862 * 179.97438 * 3 2 1 5 5 C 1.34281 * 111.64030 * 359.72492 * 4 3 2 6 6 C 1.50693 * 126.82852 * 180.32697 * 5 4 3 7 7 C 1.35915 * 106.34529 * 0.44101 * 5 4 3 8 8 N 1.40621 * 128.05936 * 179.85826 * 7 5 4 9 9 C 1.34774 * 119.99899 * 139.68138 * 8 7 5 10 10 O 1.21746 * 120.00040 * 5.98990 * 9 8 7 11 11 C 1.46240 * 119.99615 * 185.98898 * 9 8 7 12 12 C 1.35031 * 119.99737 * 180.02562 * 11 9 8 13 13 C 1.46956 * 119.99858 * 179.72453 * 12 11 9 14 14 C 1.40022 * 120.10227 * 359.72221 * 13 12 11 15 15 C 1.37606 * 119.89487 * 179.76501 * 14 13 12 16 16 C 1.39177 * 120.10157 * 0.51301 * 15 14 13 17 17 O 1.35572 * 119.89632 * 179.76389 * 16 15 14 18 18 C 1.34780 * 116.99703 * 174.35031 * 17 16 15 19 19 H 1.07998 * 120.00058 * 5.08993 * 18 17 16 20 20 C 1.38718 * 119.99717 * 185.08756 * 18 17 16 21 21 N 1.31516 * 120.00111 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00079 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.46816 * 0.02562 * 22 20 18 24 24 H 1.48499 * 109.47253 * 120.00171 * 22 20 18 25 25 H 1.48505 * 109.47285 * 240.00275 * 22 20 18 26 26 C 1.39168 * 120.20330 * 359.73718 * 16 15 14 27 27 C 1.37605 * 120.10256 * 0.02562 * 26 16 15 28 28 H 1.08995 * 109.47213 * 277.01244 * 1 2 3 29 29 H 1.09000 * 109.47397 * 37.01812 * 1 2 3 30 30 H 1.09003 * 109.47100 * 157.01251 * 1 2 3 31 31 H 1.08999 * 109.47391 * 275.07286 * 6 5 4 32 32 H 1.09012 * 109.46726 * 35.07333 * 6 5 4 33 33 H 1.09000 * 109.47401 * 155.06860 * 6 5 4 34 34 H 0.97002 * 119.99556 * 319.67489 * 8 7 5 35 35 H 1.07999 * 120.00266 * 359.72516 * 11 9 8 36 36 H 1.07999 * 119.99939 * 359.72271 * 12 11 9 37 37 H 1.07995 * 120.05298 * 0.02562 * 14 13 12 38 38 H 1.08001 * 119.94594 * 180.22930 * 15 14 13 39 39 H 0.96996 * 119.99697 * 180.02562 * 21 20 18 40 40 H 1.08005 * 119.94892 * 179.97438 * 26 16 15 41 41 H 1.08005 * 120.05027 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2869 1.0422 0.0000 4 8 3.4543 0.7282 0.0005 5 6 3.6084 -0.6057 0.0069 6 6 4.9103 -1.3646 0.0164 7 6 2.3568 -1.1354 0.0006 8 7 1.9899 -2.4929 0.0008 9 6 0.9506 -2.9099 0.7508 10 8 0.2620 -2.0983 1.3418 11 6 0.6501 -4.3373 0.8544 12 6 -0.3915 -4.7551 1.6054 13 6 -0.6972 -6.1891 1.7047 14 6 0.0866 -7.1236 1.0170 15 6 -0.2005 -8.4656 1.1169 16 6 -1.2745 -8.8939 1.8915 17 8 -1.5565 -10.2168 1.9832 18 6 -2.5335 -10.5762 2.8393 19 1 -3.1075 -9.8188 3.3524 20 6 -2.8017 -11.9189 3.0613 21 7 -2.1024 -12.8412 2.4369 22 14 -4.1562 -12.4172 4.2473 23 1 -4.7890 -11.1998 4.8156 24 1 -5.1790 -13.2145 3.5239 25 1 -3.5777 -13.2332 5.3450 26 6 -2.0595 -7.9684 2.5727 27 6 -1.7770 -6.6246 2.4826 28 1 -0.3633 0.1255 1.0199 29 1 -0.3634 0.8205 -0.6187 30 1 -0.3633 -0.9461 -0.4013 31 1 5.2749 -1.4734 -1.0051 32 1 5.6450 -0.8183 0.6082 33 1 4.7529 -2.3508 0.4530 34 1 2.4848 -3.1291 -0.5389 35 1 1.2582 -5.0570 0.3265 36 1 -0.9998 -4.0355 2.1330 37 1 0.9178 -6.7919 0.4124 38 1 0.4058 -9.1874 0.5897 39 1 -2.2903 -13.7801 2.5919 40 1 -2.8923 -8.3052 3.1723 41 1 -2.3865 -5.9071 3.0119 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491352391.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:35 Heat of formation + Delta-G solvation = 18.164927 kcal Electronic energy + Delta-G solvation = -25628.123852 eV Core-core repulsion = 21669.818155 eV Total energy + Delta-G solvation = -3958.305697 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -45.99864 -41.03184 -40.72043 -38.52725 -36.80137 -35.08478 -34.69910 -34.02363 -33.30050 -31.95213 -29.82831 -29.65344 -28.42793 -27.51174 -25.45882 -23.85672 -23.35575 -22.08267 -21.63680 -20.56756 -19.73982 -18.96591 -18.84803 -18.66215 -18.14924 -16.97778 -16.44843 -16.44244 -16.11245 -15.97817 -15.61592 -15.48839 -15.02330 -14.76780 -14.62039 -14.29818 -14.10832 -14.01796 -13.89869 -13.61614 -13.50118 -13.33314 -13.29295 -13.15712 -12.73586 -12.56066 -12.44065 -12.20188 -12.10816 -11.71700 -11.20634 -11.12513 -11.00691 -10.69803 -10.56625 -9.87712 -9.56233 -8.67732 -8.52489 -6.18315 -0.30174 0.37817 0.60211 0.95698 1.23265 1.36090 1.45306 1.53642 1.73614 2.14916 2.28505 2.41819 2.86296 3.18456 3.26310 3.39683 3.43604 3.73345 3.91008 3.96677 4.09811 4.26487 4.33693 4.35594 4.46945 4.50624 4.62175 4.66579 4.69550 4.74131 4.85463 4.95921 5.02500 5.12924 5.17623 5.20688 5.25354 5.33940 5.42647 5.58662 5.65211 5.81145 5.97833 6.11847 6.39611 6.92259 7.13321 7.22728 7.69554 8.69669 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.034518 B = 0.001824 C = 0.001756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.973593 B =15347.736043 C =15940.262338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 C 0.016 3.984 3 N -0.389 5.389 4 O 0.097 5.903 5 C -0.038 4.038 6 C -0.071 4.071 7 C 0.013 3.987 8 N -0.626 5.626 9 C 0.552 3.448 10 O -0.562 6.562 11 C -0.243 4.243 12 C 0.025 3.975 13 C -0.172 4.172 14 C -0.034 4.034 15 C -0.208 4.208 16 C 0.130 3.870 17 O -0.220 6.220 18 C -0.415 4.415 19 H 0.106 0.894 20 C -0.019 4.019 21 N -0.913 5.913 22 Si 1.018 2.982 23 H -0.251 1.251 24 H -0.269 1.269 25 H -0.268 1.268 26 C -0.251 4.251 27 C -0.039 4.039 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.112 0.888 32 H 0.100 0.900 33 H 0.102 0.898 34 H 0.433 0.567 35 H 0.159 0.841 36 H 0.127 0.873 37 H 0.165 0.835 38 H 0.123 0.877 39 H 0.275 0.725 40 H 0.123 0.877 41 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.603 20.059 -5.640 23.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.144 4.144 3 N -0.097 5.097 4 O 0.036 5.964 5 C -0.105 4.105 6 C -0.128 4.128 7 C -0.085 4.085 8 N -0.276 5.276 9 C 0.345 3.655 10 O -0.442 6.442 11 C -0.263 4.263 12 C 0.006 3.994 13 C -0.173 4.173 14 C -0.052 4.052 15 C -0.227 4.227 16 C 0.078 3.922 17 O -0.125 6.125 18 C -0.491 4.491 19 H 0.123 0.877 20 C -0.218 4.218 21 N -0.550 5.550 22 Si 0.837 3.163 23 H -0.174 1.174 24 H -0.194 1.194 25 H -0.193 1.193 26 C -0.270 4.270 27 C -0.057 4.057 28 H 0.092 0.908 29 H 0.092 0.908 30 H 0.093 0.907 31 H 0.130 0.870 32 H 0.118 0.882 33 H 0.121 0.879 34 H 0.273 0.727 35 H 0.176 0.824 36 H 0.144 0.856 37 H 0.182 0.818 38 H 0.141 0.859 39 H 0.084 0.916 40 H 0.140 0.860 41 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 11.027 21.478 -5.349 24.729 hybrid contribution -0.732 -1.674 0.295 1.851 sum 10.295 19.804 -5.054 22.885 Atomic orbital electron populations 1.20053 0.85158 1.02702 1.02937 1.23787 0.99822 0.88416 1.02415 1.73800 0.89866 1.24179 1.21896 1.84820 1.20745 1.22648 1.68231 1.24794 0.98465 0.83459 1.03768 1.20596 0.87743 0.98500 1.05961 1.18185 0.91830 0.86816 1.11708 1.42419 1.33753 1.04425 1.47013 1.18727 0.79188 0.89832 0.77713 1.90845 1.49878 1.56508 1.46958 1.22561 1.03218 0.92712 1.07840 1.22179 0.93230 0.92682 0.91345 1.18756 1.00267 0.92829 1.05425 1.21320 0.97930 0.90142 0.95806 1.20451 0.99166 0.97319 1.05761 1.20223 0.93761 0.84335 0.93904 1.83884 1.51767 1.19980 1.56837 1.21922 1.11913 0.93381 1.21862 0.87721 1.26596 1.01258 0.94189 0.99741 1.70150 1.41015 1.01507 1.42324 0.84534 0.75989 0.79134 0.76633 1.17434 1.19358 1.19348 1.21200 1.04214 0.94013 1.07596 1.21324 0.95228 0.94140 0.95031 0.90782 0.90783 0.90720 0.87002 0.88161 0.87897 0.72676 0.82357 0.85551 0.81800 0.85878 0.91603 0.85969 0.83872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.19 8.52 71.23 0.61 -0.58 16 2 C 0.02 0.38 6.99 43.69 0.31 0.69 16 3 N -0.39 -9.88 12.06 -48.93 -0.59 -10.47 16 4 O 0.10 2.03 11.20 69.37 0.78 2.80 16 5 C -0.04 -0.59 7.52 25.14 0.19 -0.40 16 6 C -0.07 -0.35 10.45 71.23 0.74 0.39 16 7 C 0.01 0.26 6.69 38.08 0.25 0.51 16 8 N -0.63 -9.60 5.46 -306.72 -1.67 -11.28 16 9 C 0.55 11.52 7.25 86.32 0.63 12.15 16 10 O -0.56 -15.76 12.20 -4.50 -0.05 -15.81 16 11 C -0.24 -4.45 9.41 23.61 0.22 -4.23 16 12 C 0.03 0.58 9.45 23.82 0.23 0.81 16 13 C -0.17 -4.83 5.87 -20.13 -0.12 -4.95 16 14 C -0.03 -0.97 9.40 22.55 0.21 -0.75 16 15 C -0.21 -7.80 9.97 22.35 0.22 -7.58 16 16 C 0.13 5.97 6.66 22.72 0.15 6.12 16 17 O -0.22 -12.43 9.74 -20.27 -0.20 -12.63 16 18 C -0.42 -22.94 9.48 67.93 0.64 -22.29 16 19 H 0.11 5.30 5.18 -2.91 -0.02 5.28 16 20 C -0.02 -1.04 5.49 84.85 0.47 -0.57 16 21 N -0.91 -53.60 13.67 21.62 0.30 -53.31 16 22 Si 1.02 40.93 29.55 68.60 2.03 42.96 16 23 H -0.25 -9.33 7.11 99.48 0.71 -8.62 16 24 H -0.27 -10.40 7.11 99.48 0.71 -9.70 16 25 H -0.27 -10.40 7.11 99.48 0.71 -9.69 16 26 C -0.25 -10.13 9.14 22.34 0.20 -9.93 16 27 C -0.04 -1.25 9.78 22.55 0.22 -1.03 16 28 H 0.07 1.89 7.60 -2.39 -0.02 1.87 16 29 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.07 1.74 6.76 -2.39 -0.02 1.73 16 31 H 0.11 0.10 8.14 -2.39 -0.02 0.08 16 32 H 0.10 0.31 8.14 -2.38 -0.02 0.29 16 33 H 0.10 0.30 8.14 -2.39 -0.02 0.28 16 34 H 0.43 3.20 8.81 -92.71 -0.82 2.38 16 35 H 0.16 1.91 6.07 -2.91 -0.02 1.90 16 36 H 0.13 2.96 7.52 -2.91 -0.02 2.94 16 37 H 0.16 3.05 6.16 -2.91 -0.02 3.03 16 38 H 0.12 4.48 8.06 -2.91 -0.02 4.46 16 39 H 0.27 14.72 8.31 -92.71 -0.77 13.95 16 40 H 0.12 5.05 5.62 -2.91 -0.02 5.03 16 41 H 0.14 3.68 8.06 -2.91 -0.02 3.65 16 Total: -1.00 -75.08 358.00 6.05 -69.04 By element: Atomic # 1 Polarization: 20.05 SS G_CDS: 0.29 Total: 20.33 kcal Atomic # 6 Polarization: -36.81 SS G_CDS: 5.18 Total: -31.63 kcal Atomic # 7 Polarization: -73.09 SS G_CDS: -1.97 Total: -75.06 kcal Atomic # 8 Polarization: -26.16 SS G_CDS: 0.52 Total: -25.64 kcal Atomic # 14 Polarization: 40.93 SS G_CDS: 2.03 Total: 42.96 kcal Total: -75.08 6.05 -69.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491352391.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.203 kcal (2) G-P(sol) polarization free energy of solvation -75.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.038 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds