Wall clock time and date at job start Tue Mar 31 2020 14:42:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30166 * 126.81155 * 2 1 4 4 O 1.20893 * 111.75722 * 180.02562 * 3 2 1 5 5 C 1.34287 * 111.63699 * 359.72184 * 4 3 2 6 6 C 1.50700 * 126.82087 * 180.29626 * 5 4 3 7 7 C 1.35910 * 106.34883 * 0.44074 * 5 4 3 8 8 N 1.40620 * 128.05709 * 179.84912 * 7 5 4 9 9 C 1.34785 * 119.99227 * 150.94481 * 8 7 5 10 10 O 1.21745 * 120.00291 * 355.97906 * 9 8 7 11 11 C 1.46233 * 119.99799 * 175.97715 * 9 8 7 12 12 C 1.35023 * 120.00100 * 173.16048 * 11 9 8 13 13 C 1.46965 * 120.00040 * 344.90352 * 12 11 9 14 14 C 1.40021 * 120.09915 * 302.22474 * 13 12 11 15 15 C 1.37598 * 119.89677 * 180.02562 * 14 13 12 16 16 C 1.39173 * 120.09887 * 0.27273 * 15 14 13 17 17 O 1.35576 * 119.89574 * 179.72500 * 16 15 14 18 18 C 1.34783 * 116.99908 * 185.38166 * 17 16 15 19 19 H 1.08000 * 120.00210 * 4.91278 * 18 17 16 20 20 C 1.38720 * 119.99895 * 184.91860 * 18 17 16 21 21 N 1.31505 * 119.99819 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99876 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.46981 * 59.99477 * 22 20 18 24 24 H 1.48493 * 109.46954 * 179.97438 * 22 20 18 25 25 H 1.48501 * 109.47075 * 299.99976 * 22 20 18 26 26 C 1.39178 * 120.20619 * 359.44568 * 16 15 14 27 27 C 1.37594 * 120.09825 * 0.55882 * 26 16 15 28 28 H 1.09003 * 109.46556 * 276.06494 * 1 2 3 29 29 H 1.09001 * 109.46694 * 36.05683 * 1 2 3 30 30 H 1.08992 * 109.47226 * 156.06246 * 1 2 3 31 31 H 1.08993 * 109.47317 * 275.12493 * 6 5 4 32 32 H 1.09001 * 109.47343 * 35.13073 * 6 5 4 33 33 H 1.09001 * 109.46663 * 155.12895 * 6 5 4 34 34 H 0.96998 * 120.00430 * 330.94856 * 8 7 5 35 35 H 1.08001 * 120.00101 * 353.16262 * 11 9 8 36 36 H 1.08007 * 119.99952 * 164.90272 * 12 11 9 37 37 H 1.08002 * 120.05227 * 359.97438 * 14 13 12 38 38 H 1.07998 * 119.95010 * 180.02562 * 15 14 13 39 39 H 0.96999 * 119.99661 * 180.02562 * 21 20 18 40 40 H 1.07994 * 119.95219 * 180.25585 * 26 16 15 41 41 H 1.08002 * 120.05159 * 179.74550 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2870 1.0421 0.0000 4 8 3.4544 0.7281 -0.0005 5 6 3.6083 -0.6059 0.0051 6 6 4.9103 -1.3648 0.0126 7 6 2.3567 -1.1355 -0.0005 8 7 1.9898 -2.4930 -0.0008 9 6 0.8261 -2.8765 0.5607 10 8 0.1275 -2.0595 1.1323 11 6 0.4025 -4.2740 0.4833 12 6 -0.6899 -4.6869 1.1610 13 6 -1.2577 -3.8446 2.2231 14 6 -0.4677 -3.4627 3.3142 15 6 -1.0037 -2.6744 4.3065 16 6 -2.3305 -2.2615 4.2296 17 8 -2.8560 -1.4895 5.2124 18 6 -4.1736 -1.2158 5.1370 19 1 -4.7764 -1.6710 4.3651 20 6 -4.7555 -0.3495 6.0509 21 7 -4.0216 0.2045 6.9910 22 14 -6.5817 0.0292 5.9468 23 1 -7.3574 -1.2278 6.0999 24 1 -6.9536 0.9748 7.0296 25 1 -6.8861 0.6411 4.6284 26 6 -3.1179 -2.6337 3.1440 27 6 -2.5905 -3.4219 2.1471 28 1 -0.3632 0.1086 1.0220 29 1 -0.3633 0.8308 -0.6049 30 1 -0.3633 -0.9392 -0.4169 31 1 5.2740 -1.4724 -1.0092 32 1 5.6454 -0.8194 0.6045 33 1 4.7531 -2.3516 0.4481 34 1 2.5741 -3.1532 -0.4051 35 1 0.9635 -4.9759 -0.1159 36 1 -1.1465 -5.6362 0.9225 37 1 0.5606 -3.7870 3.3773 38 1 -0.3950 -2.3790 5.1483 39 1 -4.4285 0.8100 7.6303 40 1 -4.1458 -2.3076 3.0864 41 1 -3.2034 -3.7138 1.3071 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491352392.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:44 Heat of formation + Delta-G solvation = 56.643432 kcal Electronic energy + Delta-G solvation = -27247.743399 eV Core-core repulsion = 23291.106255 eV Total energy + Delta-G solvation = -3956.637144 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -44.88832 -40.00674 -38.84387 -36.75666 -35.52487 -34.00388 -33.17067 -32.47523 -32.07084 -30.18387 -28.42581 -28.36776 -27.54327 -25.49409 -24.26861 -22.15496 -21.80962 -21.06546 -20.62353 -19.13822 -17.98161 -17.77091 -17.70752 -17.24584 -16.61981 -15.90883 -15.09398 -14.93176 -14.58410 -14.38673 -14.10336 -13.74769 -13.62311 -13.54469 -13.42626 -13.22037 -13.01363 -12.86123 -12.69762 -12.42036 -12.32642 -12.21932 -11.71083 -11.43220 -11.31270 -11.00365 -10.76713 -10.72112 -10.65038 -10.43641 -9.67615 -9.54259 -9.45915 -9.18688 -8.74930 -8.41694 -8.11170 -6.98842 -6.46427 -4.02996 1.08067 1.45011 2.21137 2.34256 2.47376 2.70910 3.13005 3.14580 3.17092 3.32363 3.45749 3.96366 4.34473 4.38410 4.59258 4.68274 4.96074 5.05295 5.11218 5.11623 5.16441 5.28159 5.28754 5.45168 5.62318 5.67672 5.68661 5.77257 5.91304 6.02369 6.16289 6.22143 6.29060 6.42495 6.46613 6.52257 6.71194 6.96243 7.07417 7.25776 7.33366 7.36584 7.45835 7.85576 7.99008 8.26544 8.31298 8.98970 9.70289 10.71380 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.014609 B = 0.003188 C = 0.002851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1916.147106 B = 8779.715911 C = 9817.921160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.039 3.961 3 N -0.361 5.361 4 O 0.102 5.898 5 C -0.079 4.079 6 C -0.065 4.065 7 C 0.048 3.952 8 N -0.646 5.646 9 C 0.533 3.467 10 O -0.477 6.477 11 C -0.255 4.255 12 C 0.034 3.966 13 C -0.174 4.174 14 C -0.029 4.029 15 C -0.192 4.192 16 C 0.165 3.835 17 O -0.173 6.173 18 C -0.391 4.391 19 H 0.093 0.907 20 C 0.040 3.960 21 N -0.860 5.860 22 Si 0.941 3.059 23 H -0.269 1.269 24 H -0.278 1.278 25 H -0.269 1.269 26 C -0.237 4.237 27 C -0.044 4.044 28 H 0.093 0.907 29 H 0.058 0.942 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.409 0.591 35 H 0.125 0.875 36 H 0.126 0.874 37 H 0.102 0.898 38 H 0.114 0.886 39 H 0.271 0.729 40 H 0.126 0.874 41 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.754 -9.351 -16.123 23.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.121 4.121 3 N -0.067 5.067 4 O 0.038 5.962 5 C -0.146 4.146 6 C -0.123 4.123 7 C -0.051 4.051 8 N -0.296 5.296 9 C 0.324 3.676 10 O -0.350 6.350 11 C -0.276 4.276 12 C 0.014 3.986 13 C -0.175 4.175 14 C -0.048 4.048 15 C -0.211 4.211 16 C 0.110 3.890 17 O -0.076 6.076 18 C -0.467 4.467 19 H 0.110 0.890 20 C -0.165 4.165 21 N -0.494 5.494 22 Si 0.765 3.235 23 H -0.194 1.194 24 H -0.202 1.202 25 H -0.194 1.194 26 C -0.256 4.256 27 C -0.062 4.062 28 H 0.111 0.889 29 H 0.076 0.924 30 H 0.100 0.900 31 H 0.101 0.899 32 H 0.103 0.897 33 H 0.103 0.897 34 H 0.245 0.755 35 H 0.143 0.857 36 H 0.143 0.857 37 H 0.120 0.880 38 H 0.132 0.868 39 H 0.081 0.919 40 H 0.144 0.856 41 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 13.029 -7.179 -15.272 21.320 hybrid contribution -0.591 -0.962 -0.365 1.186 sum 12.438 -8.141 -15.637 21.575 Atomic orbital electron populations 1.20286 0.84777 1.02124 1.04265 1.23489 0.99414 0.87056 1.02164 1.73812 0.89143 1.23493 1.20265 1.84837 1.21448 1.21230 1.68688 1.23769 0.96911 0.84511 1.09401 1.20205 0.90130 0.98322 1.03610 1.18133 0.91636 0.86686 1.08635 1.42807 1.22948 1.03833 1.60041 1.18645 0.79998 0.90045 0.78879 1.91070 1.52140 1.52992 1.38812 1.22566 1.02526 0.94098 1.08382 1.22407 0.90743 0.96599 0.88812 1.18260 0.94850 1.07344 0.97067 1.20439 0.96643 0.94947 0.92741 1.20006 0.94013 1.05207 1.01906 1.19503 0.92193 0.89666 0.87611 1.83926 1.25690 1.57600 1.40348 1.21317 0.80820 1.28111 1.16497 0.89007 1.25316 1.00496 0.95484 0.95197 1.70009 1.36349 1.27982 1.15036 0.85780 0.80464 0.78754 0.78457 1.19444 1.20240 1.19427 1.20985 1.01405 1.06568 0.96646 1.20657 0.93126 0.95810 0.96610 0.88878 0.92370 0.90012 0.89890 0.89654 0.89680 0.75474 0.85684 0.85670 0.87955 0.86815 0.91875 0.85634 0.87662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.93 8.40 36.01 0.30 -0.62 16 2 C 0.04 0.63 7.04 -81.93 -0.58 0.05 16 3 N -0.36 -5.85 12.06 33.57 0.40 -5.45 16 4 O 0.10 1.40 11.20 16.53 0.19 1.59 16 5 C -0.08 -0.88 7.52 -35.14 -0.26 -1.15 16 6 C -0.07 -0.39 10.45 36.01 0.38 -0.01 16 7 C 0.05 0.63 6.82 -83.29 -0.57 0.06 16 8 N -0.65 -6.90 5.46 -10.94 -0.06 -6.96 16 9 C 0.53 7.08 6.73 -13.05 -0.09 7.00 16 10 O -0.48 -8.35 8.60 5.15 0.04 -8.31 16 11 C -0.25 -2.70 9.95 -37.51 -0.37 -3.07 16 12 C 0.03 0.41 9.70 -37.19 -0.36 0.05 16 13 C -0.17 -2.94 3.78 -105.02 -0.40 -3.34 16 14 C -0.03 -0.54 7.85 -39.15 -0.31 -0.85 16 15 C -0.19 -4.25 9.97 -39.47 -0.39 -4.64 16 16 C 0.16 4.09 6.66 -38.89 -0.26 3.83 16 17 O -0.17 -5.04 9.74 0.72 0.01 -5.04 16 18 C -0.39 -11.07 9.44 30.91 0.29 -10.78 16 19 H 0.09 2.39 5.26 -52.49 -0.28 2.11 16 20 C 0.04 1.11 5.49 -17.51 -0.10 1.01 16 21 N -0.86 -25.53 13.67 55.48 0.76 -24.77 16 22 Si 0.94 20.70 29.55 -169.99 -5.02 15.68 16 23 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 24 H -0.28 -5.97 7.11 56.52 0.40 -5.56 16 25 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 26 C -0.24 -5.23 9.11 -39.47 -0.36 -5.59 16 27 C -0.04 -0.80 9.78 -39.15 -0.38 -1.19 16 28 H 0.09 1.75 7.50 -51.93 -0.39 1.36 16 29 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.08 1.29 6.14 -51.93 -0.32 0.98 16 31 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.41 2.69 8.81 -40.82 -0.36 2.33 16 35 H 0.13 0.84 8.06 -52.49 -0.42 0.41 16 36 H 0.13 1.14 8.06 -52.48 -0.42 0.72 16 37 H 0.10 1.68 8.06 -52.49 -0.42 1.25 16 38 H 0.11 2.48 8.06 -52.49 -0.42 2.05 16 39 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 40 H 0.13 2.77 5.68 -52.49 -0.30 2.48 16 41 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 LS Contribution 354.87 15.07 5.35 5.35 Total: -1.00 -34.68 354.87 -6.37 -41.06 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: -4.58 Total: 6.08 kcal Atomic # 6 Polarization: -15.77 SS G_CDS: -3.46 Total: -19.23 kcal Atomic # 7 Polarization: -38.28 SS G_CDS: 1.10 Total: -37.17 kcal Atomic # 8 Polarization: -11.99 SS G_CDS: 0.24 Total: -11.76 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -34.68 -6.37 -41.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491352392.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.700 kcal (2) G-P(sol) polarization free energy of solvation -34.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.057 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds