Wall clock time and date at job start Tue Mar 31 2020 14:42:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30166 * 126.81155 * 2 1 4 4 O 1.20893 * 111.75722 * 180.02562 * 3 2 1 5 5 C 1.34287 * 111.63699 * 359.72184 * 4 3 2 6 6 C 1.50700 * 126.82087 * 180.29626 * 5 4 3 7 7 C 1.35910 * 106.34883 * 0.44074 * 5 4 3 8 8 N 1.40620 * 128.05709 * 179.84912 * 7 5 4 9 9 C 1.34785 * 119.99227 * 150.94481 * 8 7 5 10 10 O 1.21745 * 120.00291 * 355.97906 * 9 8 7 11 11 C 1.46233 * 119.99799 * 175.97715 * 9 8 7 12 12 C 1.35023 * 120.00100 * 173.16048 * 11 9 8 13 13 C 1.46965 * 120.00040 * 344.90352 * 12 11 9 14 14 C 1.40021 * 120.09915 * 302.22474 * 13 12 11 15 15 C 1.37598 * 119.89677 * 180.02562 * 14 13 12 16 16 C 1.39173 * 120.09887 * 0.27273 * 15 14 13 17 17 O 1.35576 * 119.89574 * 179.72500 * 16 15 14 18 18 C 1.34783 * 116.99908 * 185.38166 * 17 16 15 19 19 H 1.08000 * 120.00210 * 4.91278 * 18 17 16 20 20 C 1.38720 * 119.99895 * 184.91860 * 18 17 16 21 21 N 1.31505 * 119.99819 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99876 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.46981 * 59.99477 * 22 20 18 24 24 H 1.48493 * 109.46954 * 179.97438 * 22 20 18 25 25 H 1.48501 * 109.47075 * 299.99976 * 22 20 18 26 26 C 1.39178 * 120.20619 * 359.44568 * 16 15 14 27 27 C 1.37594 * 120.09825 * 0.55882 * 26 16 15 28 28 H 1.09003 * 109.46556 * 276.06494 * 1 2 3 29 29 H 1.09001 * 109.46694 * 36.05683 * 1 2 3 30 30 H 1.08992 * 109.47226 * 156.06246 * 1 2 3 31 31 H 1.08993 * 109.47317 * 275.12493 * 6 5 4 32 32 H 1.09001 * 109.47343 * 35.13073 * 6 5 4 33 33 H 1.09001 * 109.46663 * 155.12895 * 6 5 4 34 34 H 0.96998 * 120.00430 * 330.94856 * 8 7 5 35 35 H 1.08001 * 120.00101 * 353.16262 * 11 9 8 36 36 H 1.08007 * 119.99952 * 164.90272 * 12 11 9 37 37 H 1.08002 * 120.05227 * 359.97438 * 14 13 12 38 38 H 1.07998 * 119.95010 * 180.02562 * 15 14 13 39 39 H 0.96999 * 119.99661 * 180.02562 * 21 20 18 40 40 H 1.07994 * 119.95219 * 180.25585 * 26 16 15 41 41 H 1.08002 * 120.05159 * 179.74550 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2870 1.0421 0.0000 4 8 3.4544 0.7281 -0.0005 5 6 3.6083 -0.6059 0.0051 6 6 4.9103 -1.3648 0.0126 7 6 2.3567 -1.1355 -0.0005 8 7 1.9898 -2.4930 -0.0008 9 6 0.8261 -2.8765 0.5607 10 8 0.1275 -2.0595 1.1323 11 6 0.4025 -4.2740 0.4833 12 6 -0.6899 -4.6869 1.1610 13 6 -1.2577 -3.8446 2.2231 14 6 -0.4677 -3.4627 3.3142 15 6 -1.0037 -2.6744 4.3065 16 6 -2.3305 -2.2615 4.2296 17 8 -2.8560 -1.4895 5.2124 18 6 -4.1736 -1.2158 5.1370 19 1 -4.7764 -1.6710 4.3651 20 6 -4.7555 -0.3495 6.0509 21 7 -4.0216 0.2045 6.9910 22 14 -6.5817 0.0292 5.9468 23 1 -7.3574 -1.2278 6.0999 24 1 -6.9536 0.9748 7.0296 25 1 -6.8861 0.6411 4.6284 26 6 -3.1179 -2.6337 3.1440 27 6 -2.5905 -3.4219 2.1471 28 1 -0.3632 0.1086 1.0220 29 1 -0.3633 0.8308 -0.6049 30 1 -0.3633 -0.9392 -0.4169 31 1 5.2740 -1.4724 -1.0092 32 1 5.6454 -0.8194 0.6045 33 1 4.7531 -2.3516 0.4481 34 1 2.5741 -3.1532 -0.4051 35 1 0.9635 -4.9759 -0.1159 36 1 -1.1465 -5.6362 0.9225 37 1 0.5606 -3.7870 3.3773 38 1 -0.3950 -2.3790 5.1483 39 1 -4.4285 0.8100 7.6303 40 1 -4.1458 -2.3076 3.0864 41 1 -3.2034 -3.7138 1.3071 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491352392.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:43 Heat of formation + Delta-G solvation = 32.565597 kcal Electronic energy + Delta-G solvation = -27248.787492 eV Core-core repulsion = 23291.106255 eV Total energy + Delta-G solvation = -3957.681237 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 2.98 seconds Orbital eigenvalues (eV) -45.99737 -41.16714 -40.51818 -38.34981 -36.66732 -35.10284 -34.58150 -33.96333 -33.26818 -31.82491 -29.76219 -29.64997 -28.42334 -27.42330 -25.46281 -23.59781 -23.35351 -22.23717 -21.77632 -20.30942 -19.77846 -18.94573 -18.79064 -18.75047 -17.99415 -16.91973 -16.40610 -16.36201 -16.16689 -15.93052 -15.52963 -15.24978 -15.00744 -14.65897 -14.52654 -14.30183 -14.28019 -13.97205 -13.88160 -13.79121 -13.57670 -13.44442 -13.27034 -12.96209 -12.58855 -12.43203 -12.33884 -12.26035 -12.14570 -11.79222 -11.27363 -10.90186 -10.70929 -10.67081 -10.28226 -9.75706 -9.34271 -8.64884 -8.49570 -6.16489 0.04141 0.44372 0.68274 0.89270 1.17527 1.31644 1.44037 1.48759 1.81790 2.16004 2.39885 2.47709 2.84449 3.19732 3.29243 3.39313 3.51572 3.77836 4.00015 4.06983 4.14515 4.17259 4.35716 4.49267 4.54717 4.57623 4.62903 4.69269 4.75886 4.77168 4.85476 5.05801 5.07797 5.15919 5.19160 5.23975 5.26898 5.43264 5.47353 5.66159 5.72750 5.76946 6.01222 6.24809 6.52370 6.94911 7.26166 7.31309 7.78144 8.74095 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.014609 B = 0.003188 C = 0.002851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1916.147106 B = 8779.715911 C = 9817.921160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 C 0.010 3.990 3 N -0.393 5.393 4 O 0.099 5.901 5 C -0.054 4.054 6 C -0.066 4.066 7 C 0.027 3.973 8 N -0.624 5.624 9 C 0.520 3.480 10 O -0.530 6.530 11 C -0.213 4.213 12 C 0.010 3.990 13 C -0.134 4.134 14 C -0.030 4.030 15 C -0.210 4.210 16 C 0.118 3.882 17 O -0.235 6.235 18 C -0.414 4.414 19 H 0.102 0.898 20 C -0.025 4.025 21 N -0.922 5.922 22 Si 1.020 2.980 23 H -0.253 1.253 24 H -0.271 1.271 25 H -0.259 1.259 26 C -0.245 4.245 27 C -0.051 4.051 28 H 0.054 0.946 29 H 0.061 0.939 30 H 0.085 0.915 31 H 0.113 0.887 32 H 0.096 0.904 33 H 0.106 0.894 34 H 0.433 0.567 35 H 0.184 0.816 36 H 0.174 0.826 37 H 0.131 0.869 38 H 0.100 0.900 39 H 0.273 0.727 40 H 0.116 0.884 41 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.937 -13.115 -20.186 28.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.150 4.150 3 N -0.101 5.101 4 O 0.035 5.965 5 C -0.122 4.122 6 C -0.123 4.123 7 C -0.072 4.072 8 N -0.275 5.275 9 C 0.312 3.688 10 O -0.406 6.406 11 C -0.233 4.233 12 C -0.009 4.009 13 C -0.135 4.135 14 C -0.048 4.048 15 C -0.229 4.229 16 C 0.068 3.932 17 O -0.141 6.141 18 C -0.490 4.490 19 H 0.119 0.881 20 C -0.222 4.222 21 N -0.561 5.561 22 Si 0.838 3.162 23 H -0.178 1.178 24 H -0.195 1.195 25 H -0.183 1.183 26 C -0.264 4.264 27 C -0.069 4.069 28 H 0.073 0.927 29 H 0.080 0.920 30 H 0.103 0.897 31 H 0.131 0.869 32 H 0.115 0.885 33 H 0.124 0.876 34 H 0.274 0.726 35 H 0.201 0.799 36 H 0.191 0.809 37 H 0.149 0.851 38 H 0.118 0.882 39 H 0.082 0.918 40 H 0.133 0.867 41 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 15.278 -11.015 -19.413 27.048 hybrid contribution -0.803 -0.005 0.523 0.958 sum 14.476 -11.020 -18.889 26.226 Atomic orbital electron populations 1.20045 0.85803 1.02382 1.01843 1.23622 0.99341 0.88637 1.03370 1.73794 0.90080 1.24465 1.21737 1.84795 1.20452 1.23036 1.68192 1.24737 0.98382 0.83293 1.05744 1.20565 0.87406 0.98413 1.05908 1.18203 0.91666 0.87194 1.10163 1.42589 1.22593 1.03245 1.59113 1.19380 0.80151 0.91103 0.78194 1.91103 1.53810 1.54616 1.41076 1.22990 1.00593 0.92863 1.06900 1.22614 0.91799 0.97943 0.88580 1.18846 0.93674 1.03971 0.96996 1.20764 0.98046 0.93845 0.92102 1.20222 0.93261 1.06473 1.02943 1.20012 0.93726 0.90901 0.88574 1.83885 1.26238 1.60887 1.43135 1.21806 0.81376 1.28695 1.17140 0.88116 1.26653 1.06071 0.94982 0.94486 1.70170 1.38888 1.30112 1.16891 0.84644 0.73543 0.79119 0.78872 1.17750 1.19528 1.18292 1.21103 1.00937 1.07274 0.97079 1.21095 0.94628 0.94707 0.96480 0.92708 0.92049 0.89667 0.86910 0.88541 0.87585 0.72625 0.79860 0.80872 0.85150 0.88188 0.91829 0.86659 0.83896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -1.46 8.40 71.24 0.60 -0.87 16 2 C 0.01 0.31 7.04 43.69 0.31 0.62 16 3 N -0.39 -12.94 12.06 -48.94 -0.59 -13.53 16 4 O 0.10 2.63 11.20 69.31 0.78 3.41 16 5 C -0.05 -1.06 7.52 25.15 0.19 -0.87 16 6 C -0.07 -0.46 10.45 71.24 0.74 0.28 16 7 C 0.03 0.64 6.82 38.07 0.26 0.90 16 8 N -0.62 -10.59 5.46 -306.72 -1.68 -12.26 16 9 C 0.52 11.72 6.73 86.32 0.58 12.30 16 10 O -0.53 -17.87 8.60 -4.49 -0.04 -17.91 16 11 C -0.21 -3.04 9.95 23.61 0.23 -2.81 16 12 C 0.01 0.17 9.70 23.82 0.23 0.41 16 13 C -0.13 -4.15 3.78 -20.13 -0.08 -4.23 16 14 C -0.03 -1.07 7.85 22.55 0.18 -0.89 16 15 C -0.21 -9.84 9.97 22.34 0.22 -9.62 16 16 C 0.12 6.33 6.66 22.72 0.15 6.48 16 17 O -0.23 -15.06 9.74 -20.35 -0.20 -15.25 16 18 C -0.41 -25.35 9.44 67.94 0.64 -24.71 16 19 H 0.10 5.65 5.26 -2.91 -0.02 5.63 16 20 C -0.02 -1.47 5.49 84.86 0.47 -1.00 16 21 N -0.92 -59.17 13.67 21.62 0.30 -58.88 16 22 Si 1.02 44.63 29.55 68.60 2.03 46.66 16 23 H -0.25 -10.28 7.11 99.48 0.71 -9.57 16 24 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 25 H -0.26 -10.69 7.11 99.48 0.71 -9.99 16 26 C -0.24 -11.30 9.11 22.34 0.20 -11.09 16 27 C -0.05 -1.81 9.78 22.55 0.22 -1.59 16 28 H 0.05 2.24 7.50 -2.39 -0.02 2.23 16 29 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 30 H 0.08 2.72 6.14 -2.39 -0.01 2.71 16 31 H 0.11 0.24 8.14 -2.39 -0.02 0.23 16 32 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.11 0.37 8.14 -2.39 -0.02 0.35 16 34 H 0.43 2.98 8.81 -92.71 -0.82 2.16 16 35 H 0.18 0.66 8.06 -2.91 -0.02 0.64 16 36 H 0.17 1.74 8.06 -2.91 -0.02 1.72 16 37 H 0.13 3.93 8.06 -2.91 -0.02 3.90 16 38 H 0.10 4.78 8.06 -2.91 -0.02 4.76 16 39 H 0.27 16.02 8.31 -92.71 -0.77 15.25 16 40 H 0.12 5.42 5.68 -2.91 -0.02 5.40 16 41 H 0.14 3.96 8.06 -2.91 -0.02 3.93 16 Total: -1.00 -89.34 354.87 6.02 -83.32 By element: Atomic # 1 Polarization: 20.85 SS G_CDS: 0.27 Total: 21.12 kcal Atomic # 6 Polarization: -41.82 SS G_CDS: 5.15 Total: -36.67 kcal Atomic # 7 Polarization: -82.70 SS G_CDS: -1.97 Total: -84.67 kcal Atomic # 8 Polarization: -30.29 SS G_CDS: 0.54 Total: -29.75 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal Total: -89.34 6.02 -83.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491352392.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.885 kcal (2) G-P(sol) polarization free energy of solvation -89.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.319 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.98 seconds