Wall clock time and date at job start Tue Mar 31 2020 15:21:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47360 * 199.80013 * 3 2 1 5 5 C 1.36933 * 119.99942 * 264.23040 * 4 3 2 6 6 H 1.07998 * 119.99866 * 196.86475 * 5 4 3 7 7 C 1.38811 * 120.00007 * 16.86513 * 5 4 3 8 8 N 1.31620 * 119.99843 * 22.15322 * 7 5 4 9 9 Si 1.86807 * 119.99912 * 202.14793 * 7 5 4 10 10 H 1.48499 * 109.46647 * 90.00144 * 9 7 5 11 11 H 1.48497 * 109.47030 * 210.00082 * 9 7 5 12 12 H 1.48499 * 109.47265 * 330.00258 * 9 7 5 13 13 C 1.46501 * 120.00016 * 84.22270 * 4 3 2 14 14 C 1.52998 * 109.47650 * 270.00424 * 13 4 3 15 15 C 1.52995 * 109.47248 * 179.97438 * 14 13 4 16 16 O 1.42904 * 109.46955 * 180.02562 * 15 14 13 17 17 N 1.41598 * 114.00014 * 180.02562 * 16 15 14 18 18 C 1.34522 * 124.45949 * 269.97727 * 17 16 15 19 19 O 1.21445 * 125.71142 * 0.03516 * 18 17 16 20 20 C 1.47818 * 108.58010 * 180.02562 * 18 17 16 21 21 C 1.38566 * 134.29231 * 180.02562 * 20 18 17 22 22 C 1.38610 * 119.71905 * 180.20952 * 21 20 18 23 23 C 1.38231 * 120.45469 * 359.51159 * 22 21 20 24 24 C 1.38613 * 120.46203 * 0.47230 * 23 22 21 25 25 C 1.38569 * 119.71775 * 359.77547 * 24 23 22 26 26 C 1.34527 * 124.46192 * 89.99445 * 17 16 15 27 27 O 1.21440 * 125.70668 * 0.02562 * 26 17 16 28 28 H 4.40642 * 5.51466 * 179.97438 * 4 1 2 29 29 H 1.08999 * 109.47307 * 79.79515 * 3 2 1 30 30 H 1.09000 * 109.47008 * 319.79757 * 3 2 1 31 31 H 0.97002 * 119.99555 * 180.02562 * 8 7 5 32 32 H 1.08999 * 109.47103 * 150.00449 * 13 4 3 33 33 H 1.09004 * 109.46800 * 30.00630 * 13 4 3 34 34 H 1.09008 * 109.46766 * 60.00143 * 14 13 4 35 35 H 1.08999 * 109.47149 * 300.00708 * 14 13 4 36 36 H 1.08999 * 109.47204 * 60.00210 * 15 14 13 37 37 H 1.08998 * 109.47184 * 299.99703 * 15 14 13 38 38 H 1.07998 * 120.14206 * 359.92348 * 21 20 18 39 39 H 1.08007 * 119.77542 * 179.72411 * 22 21 20 40 40 H 1.08001 * 119.77006 * 180.24934 * 23 22 21 41 41 H 1.07993 * 120.13991 * 179.74740 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1338 1.3004 0.4679 5 6 3.4740 2.2702 -0.4371 6 1 4.0785 3.1098 -0.1272 7 6 3.0419 2.1741 -1.7527 8 7 1.9887 1.4420 -2.0476 9 14 3.9553 3.0840 -3.1046 10 1 5.0246 2.2116 -3.6531 11 1 3.0056 3.4439 -4.1880 12 1 4.5618 4.3196 -2.5472 13 6 3.2575 1.5627 1.9039 14 6 1.9473 2.1527 2.4294 15 6 2.0763 2.4260 3.9292 16 8 0.8523 2.9764 4.4201 17 7 0.8666 3.2678 5.8057 18 6 0.5020 2.4027 6.7692 19 8 0.1150 1.2654 6.5913 20 6 0.6516 3.0679 8.0807 21 6 0.4325 2.6803 9.3929 22 6 0.6755 3.5750 10.4233 23 6 1.1440 4.8467 10.1512 24 6 1.3680 5.2482 8.8435 25 6 1.1247 4.3661 7.8029 26 6 1.2463 4.4462 6.3319 27 8 1.6248 5.4140 5.7035 28 1 -1.0502 -0.0002 -0.0003 29 1 3.0095 -0.1812 -1.0114 30 1 3.0097 -0.7841 0.6634 31 1 1.6870 1.3745 -2.9671 32 1 4.0690 2.2699 2.0755 33 1 3.4715 0.6303 2.4264 34 1 1.1358 1.4454 2.2578 35 1 1.7332 3.0850 1.9068 36 1 2.8879 3.1330 4.1012 37 1 2.2900 1.4934 4.4514 38 1 0.0696 1.6869 9.6115 39 1 0.5008 3.2753 11.4462 40 1 1.3334 5.5335 10.9629 41 1 1.7302 6.2443 8.6367 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491736445.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:21:57 Heat of formation + Delta-G solvation = 80.658972 kcal Electronic energy + Delta-G solvation = -26564.262585 eV Core-core repulsion = 22608.666833 eV Total energy + Delta-G solvation = -3955.595752 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -42.36890 -38.97516 -38.86589 -37.41185 -36.34572 -35.38866 -32.67746 -31.66498 -31.53905 -30.94506 -29.78694 -26.20297 -25.50341 -25.49378 -24.00666 -22.55771 -22.21154 -20.69292 -20.40636 -18.35140 -18.15799 -17.47332 -17.14035 -16.95762 -16.39667 -15.74060 -15.52119 -15.23647 -15.05381 -14.85888 -14.52693 -14.44707 -14.24395 -13.68655 -13.49956 -13.22387 -13.13629 -12.84973 -12.36814 -12.35529 -11.93085 -11.42987 -11.28960 -11.13175 -10.93774 -10.79962 -10.73361 -10.34023 -10.26443 -10.21995 -9.99230 -9.82843 -9.75252 -9.74831 -8.89125 -8.77452 -8.41264 -7.05801 -5.80801 -3.21701 -0.38504 0.45011 1.08126 1.60322 2.62966 3.09074 3.20555 3.37699 3.44977 3.46364 3.76488 4.02812 4.07635 4.19975 4.35027 4.41373 4.53430 4.53989 4.67947 4.85060 5.21465 5.22537 5.24225 5.32874 5.39953 5.43565 5.55702 5.65028 5.79784 5.83534 5.95820 6.02626 6.03656 6.25515 6.31361 6.40557 6.69299 6.74877 6.90542 7.00924 7.22575 7.44848 7.54379 7.74572 8.25839 9.08427 9.21521 9.74115 10.19676 11.22633 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.021714 B = 0.002503 C = 0.002328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.179492 B =11185.486000 C =12023.621694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.298 4.298 2 C -0.098 4.098 3 C 0.266 3.734 4 N -0.581 5.581 5 C -0.268 4.268 6 H 0.077 0.923 7 C 0.004 3.996 8 N -0.886 5.886 9 Si 0.903 3.097 10 H -0.287 1.287 11 H -0.292 1.292 12 H -0.279 1.279 13 C 0.156 3.844 14 C -0.132 4.132 15 C 0.025 3.975 16 O -0.104 6.104 17 N -0.448 5.448 18 C 0.571 3.429 19 O -0.446 6.446 20 C -0.130 4.130 21 C -0.043 4.043 22 C -0.095 4.095 23 C -0.095 4.095 24 C -0.043 4.043 25 C -0.130 4.130 26 C 0.571 3.429 27 O -0.445 6.445 28 H 0.190 0.810 29 H 0.098 0.902 30 H 0.038 0.962 31 H 0.255 0.745 32 H 0.053 0.947 33 H 0.044 0.956 34 H 0.072 0.928 35 H 0.076 0.924 36 H 0.063 0.937 37 H 0.061 0.939 38 H 0.145 0.855 39 H 0.144 0.856 40 H 0.144 0.856 41 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.093 3.570 27.363 27.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.318 4.318 2 C -0.100 4.100 3 C 0.141 3.859 4 N -0.300 5.300 5 C -0.397 4.397 6 H 0.095 0.905 7 C -0.196 4.196 8 N -0.529 5.529 9 Si 0.733 3.267 10 H -0.214 1.214 11 H -0.219 1.219 12 H -0.205 1.205 13 C 0.028 3.972 14 C -0.174 4.174 15 C -0.053 4.053 16 O -0.104 6.104 17 N -0.236 5.236 18 C 0.361 3.639 19 O -0.315 6.315 20 C -0.134 4.134 21 C -0.061 4.061 22 C -0.113 4.113 23 C -0.113 4.113 24 C -0.061 4.061 25 C -0.134 4.134 26 C 0.360 3.640 27 O -0.314 6.314 28 H 0.207 0.793 29 H 0.116 0.884 30 H 0.056 0.944 31 H 0.066 0.934 32 H 0.071 0.929 33 H 0.062 0.938 34 H 0.091 0.909 35 H 0.094 0.906 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.163 0.837 39 H 0.162 0.838 40 H 0.162 0.838 41 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -1.289 3.479 26.500 26.759 hybrid contribution -0.008 0.568 -1.120 1.256 sum -1.297 4.048 25.380 25.734 Atomic orbital electron populations 1.24192 0.95353 1.05161 1.07049 1.24262 0.95275 0.95820 0.94682 1.17869 0.82898 0.85481 0.99683 1.44270 1.74190 1.11798 0.99757 1.19256 1.26421 1.04554 0.89426 0.90499 1.24946 0.96362 0.99721 0.98542 1.70145 1.21340 1.43118 1.18283 0.86281 0.79246 0.79311 0.81907 1.21351 1.21901 1.20478 1.20814 0.93335 0.97542 0.85462 1.22533 1.03323 1.03537 0.87993 1.23584 0.86165 0.97645 0.97874 1.90940 1.36178 1.85023 0.98273 1.48317 1.61315 1.14041 0.99880 1.18566 0.76488 0.84812 0.84075 1.90839 1.39867 1.15966 1.84854 1.20424 1.04141 0.95104 0.93761 1.20831 0.95482 1.00587 0.89242 1.21489 0.96974 0.93206 0.99652 1.21490 0.96990 0.96585 0.96238 1.20836 0.95459 0.99299 0.90547 1.20425 1.04194 0.96000 0.92774 1.18570 0.76269 0.81724 0.87434 1.90845 1.40304 1.32596 1.67632 0.79323 0.88417 0.94424 0.93434 0.92909 0.93781 0.90886 0.90551 0.91915 0.92069 0.83719 0.83841 0.83842 0.83711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.30 -7.05 19.25 29.55 0.57 -6.48 16 2 C -0.10 -2.42 10.54 -37.12 -0.39 -2.81 16 3 C 0.27 6.34 5.45 -6.83 -0.04 6.30 16 4 N -0.58 -14.16 2.50 -176.58 -0.44 -14.60 16 5 C -0.27 -7.16 9.66 -15.06 -0.15 -7.31 16 6 H 0.08 2.03 7.90 -52.49 -0.41 1.61 16 7 C 0.00 0.11 4.85 -17.43 -0.08 0.02 16 8 N -0.89 -25.31 9.50 55.49 0.53 -24.78 16 9 Si 0.90 21.61 29.61 -169.99 -5.03 16.58 16 10 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 12 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 13 C 0.16 3.15 5.70 -4.04 -0.02 3.12 16 14 C -0.13 -2.63 5.76 -26.73 -0.15 -2.79 16 15 C 0.03 0.43 6.40 37.15 0.24 0.67 16 16 O -0.10 -1.91 11.36 -27.91 -0.32 -2.23 16 17 N -0.45 -6.94 3.16 -13.25 -0.04 -6.98 16 18 C 0.57 7.96 8.24 -12.46 -0.10 7.86 16 19 O -0.45 -7.34 18.02 -0.77 -0.01 -7.36 16 20 C -0.13 -1.28 6.40 -104.84 -0.67 -1.96 16 21 C -0.04 -0.27 10.09 -39.32 -0.40 -0.67 16 22 C -0.10 -0.36 10.04 -39.45 -0.40 -0.76 16 23 C -0.09 -0.36 10.04 -39.45 -0.40 -0.76 16 24 C -0.04 -0.27 10.09 -39.32 -0.40 -0.67 16 25 C -0.13 -1.29 6.41 -104.84 -0.67 -1.96 16 26 C 0.57 8.01 8.24 -12.45 -0.10 7.91 16 27 O -0.44 -7.42 18.02 -0.76 -0.01 -7.44 16 28 H 0.19 3.82 7.80 -54.08 -0.42 3.40 16 29 H 0.10 2.52 6.42 -51.93 -0.33 2.19 16 30 H 0.04 0.78 7.98 -51.93 -0.41 0.37 16 31 H 0.26 7.17 8.31 -40.82 -0.34 6.84 16 32 H 0.05 1.01 8.02 -51.93 -0.42 0.59 16 33 H 0.04 0.79 7.95 -51.93 -0.41 0.38 16 34 H 0.07 1.59 7.21 -51.92 -0.37 1.22 16 35 H 0.08 1.71 8.14 -51.93 -0.42 1.29 16 36 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 37 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 38 H 0.15 0.69 8.06 -52.49 -0.42 0.27 16 39 H 0.14 0.11 8.06 -52.48 -0.42 -0.31 16 40 H 0.14 0.12 8.06 -52.49 -0.42 -0.30 16 41 H 0.15 0.71 8.06 -52.49 -0.42 0.28 16 LS Contribution 368.89 15.07 5.56 5.56 Total: -1.00 -34.10 368.89 -7.82 -41.92 By element: Atomic # 1 Polarization: 4.47 SS G_CDS: -4.88 Total: -0.41 kcal Atomic # 6 Polarization: 2.90 SS G_CDS: -3.16 Total: -0.26 kcal Atomic # 7 Polarization: -46.41 SS G_CDS: 0.04 Total: -46.36 kcal Atomic # 8 Polarization: -16.68 SS G_CDS: -0.34 Total: -17.02 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.03 Total: 16.58 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -34.10 -7.82 -41.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491736445.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.581 kcal (2) G-P(sol) polarization free energy of solvation -34.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.922 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds