Wall clock time and date at job start Tue Mar 31 2020 15:21:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47360 * 199.80013 * 3 2 1 5 5 C 1.36933 * 119.99942 * 264.23040 * 4 3 2 6 6 H 1.07998 * 119.99866 * 196.86475 * 5 4 3 7 7 C 1.38811 * 120.00007 * 16.86513 * 5 4 3 8 8 N 1.31620 * 119.99843 * 22.15322 * 7 5 4 9 9 Si 1.86807 * 119.99912 * 202.14793 * 7 5 4 10 10 H 1.48499 * 109.46647 * 90.00144 * 9 7 5 11 11 H 1.48497 * 109.47030 * 210.00082 * 9 7 5 12 12 H 1.48499 * 109.47265 * 330.00258 * 9 7 5 13 13 C 1.46501 * 120.00016 * 84.22270 * 4 3 2 14 14 C 1.52998 * 109.47650 * 270.00424 * 13 4 3 15 15 C 1.52995 * 109.47248 * 179.97438 * 14 13 4 16 16 O 1.42904 * 109.46955 * 180.02562 * 15 14 13 17 17 N 1.41598 * 114.00014 * 180.02562 * 16 15 14 18 18 C 1.34522 * 124.45949 * 269.97727 * 17 16 15 19 19 O 1.21445 * 125.71142 * 0.03516 * 18 17 16 20 20 C 1.47818 * 108.58010 * 180.02562 * 18 17 16 21 21 C 1.38566 * 134.29231 * 180.02562 * 20 18 17 22 22 C 1.38610 * 119.71905 * 180.20952 * 21 20 18 23 23 C 1.38231 * 120.45469 * 359.51159 * 22 21 20 24 24 C 1.38613 * 120.46203 * 0.47230 * 23 22 21 25 25 C 1.38569 * 119.71775 * 359.77547 * 24 23 22 26 26 C 1.34527 * 124.46192 * 89.99445 * 17 16 15 27 27 O 1.21440 * 125.70668 * 0.02562 * 26 17 16 28 28 H 4.40642 * 5.51466 * 179.97438 * 4 1 2 29 29 H 1.08999 * 109.47307 * 79.79515 * 3 2 1 30 30 H 1.09000 * 109.47008 * 319.79757 * 3 2 1 31 31 H 0.97002 * 119.99555 * 180.02562 * 8 7 5 32 32 H 1.08999 * 109.47103 * 150.00449 * 13 4 3 33 33 H 1.09004 * 109.46800 * 30.00630 * 13 4 3 34 34 H 1.09008 * 109.46766 * 60.00143 * 14 13 4 35 35 H 1.08999 * 109.47149 * 300.00708 * 14 13 4 36 36 H 1.08999 * 109.47204 * 60.00210 * 15 14 13 37 37 H 1.08998 * 109.47184 * 299.99703 * 15 14 13 38 38 H 1.07998 * 120.14206 * 359.92348 * 21 20 18 39 39 H 1.08007 * 119.77542 * 179.72411 * 22 21 20 40 40 H 1.08001 * 119.77006 * 180.24934 * 23 22 21 41 41 H 1.07993 * 120.13991 * 179.74740 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1338 1.3004 0.4679 5 6 3.4740 2.2702 -0.4371 6 1 4.0785 3.1098 -0.1272 7 6 3.0419 2.1741 -1.7527 8 7 1.9887 1.4420 -2.0476 9 14 3.9553 3.0840 -3.1046 10 1 5.0246 2.2116 -3.6531 11 1 3.0056 3.4439 -4.1880 12 1 4.5618 4.3196 -2.5472 13 6 3.2575 1.5627 1.9039 14 6 1.9473 2.1527 2.4294 15 6 2.0763 2.4260 3.9292 16 8 0.8523 2.9764 4.4201 17 7 0.8666 3.2678 5.8057 18 6 0.5020 2.4027 6.7692 19 8 0.1150 1.2654 6.5913 20 6 0.6516 3.0679 8.0807 21 6 0.4325 2.6803 9.3929 22 6 0.6755 3.5750 10.4233 23 6 1.1440 4.8467 10.1512 24 6 1.3680 5.2482 8.8435 25 6 1.1247 4.3661 7.8029 26 6 1.2463 4.4462 6.3319 27 8 1.6248 5.4140 5.7035 28 1 -1.0502 -0.0002 -0.0003 29 1 3.0095 -0.1812 -1.0114 30 1 3.0097 -0.7841 0.6634 31 1 1.6870 1.3745 -2.9671 32 1 4.0690 2.2699 2.0755 33 1 3.4715 0.6303 2.4264 34 1 1.1358 1.4454 2.2578 35 1 1.7332 3.0850 1.9068 36 1 2.8879 3.1330 4.1012 37 1 2.2900 1.4934 4.4514 38 1 0.0696 1.6869 9.6115 39 1 0.5008 3.2753 11.4462 40 1 1.3334 5.5335 10.9629 41 1 1.7302 6.2443 8.6367 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491736445.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:21:56 Heat of formation + Delta-G solvation = 60.704518 kcal Electronic energy + Delta-G solvation = -26565.127875 eV Core-core repulsion = 22608.666833 eV Total energy + Delta-G solvation = -3956.461042 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 3.30 seconds Orbital eigenvalues (eV) -43.32446 -40.00366 -39.75188 -38.76240 -38.03671 -36.50884 -34.33670 -33.47652 -32.23720 -32.17393 -31.14127 -28.06465 -27.18410 -26.40412 -24.84760 -23.87424 -23.32970 -22.20228 -21.46084 -19.54200 -19.39688 -18.96253 -18.39799 -18.04920 -17.86258 -16.95565 -16.89343 -16.53324 -16.14720 -15.89281 -15.52515 -15.50804 -15.41142 -15.18514 -15.08708 -14.98673 -14.06941 -13.79075 -13.71543 -13.33175 -13.26754 -13.15903 -12.95358 -12.72002 -12.53360 -12.31470 -12.22534 -12.00492 -11.80821 -11.67620 -11.47539 -11.23481 -10.81782 -10.73939 -10.34707 -10.27264 -10.25860 -9.03795 -7.87544 -5.29903 -1.16049 -0.10797 -0.01592 0.84846 1.46653 1.48100 1.56205 1.58889 2.27689 2.45433 2.49115 2.56824 2.57463 2.67769 3.02573 3.25150 3.50742 3.64534 3.75465 3.91440 4.04760 4.06053 4.16450 4.19321 4.19733 4.38047 4.41915 4.42398 4.69020 4.83481 4.84221 4.85143 4.99658 5.07202 5.21407 5.23770 5.27225 5.28675 5.32721 5.60175 5.65016 5.68348 5.88225 6.24595 6.39884 7.05355 7.31376 7.77079 8.19074 9.14103 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.021714 B = 0.002503 C = 0.002328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.179492 B =11185.486000 C =12023.621694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.301 4.301 2 C -0.126 4.126 3 C 0.266 3.734 4 N -0.596 5.596 5 C -0.273 4.273 6 H 0.077 0.923 7 C -0.047 4.047 8 N -0.914 5.914 9 Si 0.965 3.035 10 H -0.281 1.281 11 H -0.302 1.302 12 H -0.273 1.273 13 C 0.155 3.845 14 C -0.116 4.116 15 C 0.040 3.960 16 O -0.139 6.139 17 N -0.458 5.458 18 C 0.568 3.432 19 O -0.485 6.485 20 C -0.149 4.149 21 C -0.035 4.035 22 C -0.074 4.074 23 C -0.074 4.074 24 C -0.036 4.036 25 C -0.149 4.149 26 C 0.567 3.433 27 O -0.486 6.486 28 H 0.216 0.784 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.247 0.753 32 H 0.064 0.936 33 H 0.072 0.928 34 H 0.050 0.950 35 H 0.043 0.957 36 H 0.071 0.929 37 H 0.075 0.925 38 H 0.160 0.840 39 H 0.189 0.811 40 H 0.188 0.812 41 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.496 4.370 31.976 32.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.320 4.320 2 C -0.128 4.128 3 C 0.141 3.859 4 N -0.315 5.315 5 C -0.403 4.403 6 H 0.095 0.905 7 C -0.243 4.243 8 N -0.558 5.558 9 Si 0.793 3.207 10 H -0.208 1.208 11 H -0.229 1.229 12 H -0.198 1.198 13 C 0.028 3.972 14 C -0.158 4.158 15 C -0.038 4.038 16 O -0.141 6.141 17 N -0.245 5.245 18 C 0.360 3.640 19 O -0.357 6.357 20 C -0.153 4.153 21 C -0.054 4.054 22 C -0.092 4.092 23 C -0.092 4.092 24 C -0.055 4.055 25 C -0.153 4.153 26 C 0.359 3.641 27 O -0.358 6.358 28 H 0.233 0.767 29 H 0.091 0.909 30 H 0.087 0.913 31 H 0.057 0.943 32 H 0.082 0.918 33 H 0.090 0.910 34 H 0.069 0.931 35 H 0.062 0.938 36 H 0.089 0.911 37 H 0.093 0.907 38 H 0.178 0.822 39 H 0.206 0.794 40 H 0.205 0.795 41 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -0.673 4.282 31.159 31.459 hybrid contribution -0.247 0.374 -2.262 2.306 sum -0.920 4.656 28.898 29.285 Atomic orbital electron populations 1.24941 0.96382 1.04429 1.06247 1.24696 0.96127 0.96569 0.95450 1.17865 0.82642 0.86236 0.99170 1.44430 1.74362 1.11614 1.01137 1.19520 1.25836 1.04701 0.90197 0.90541 1.25627 0.97139 1.01138 1.00394 1.70307 1.22693 1.44960 1.17840 0.85314 0.77847 0.78448 0.79059 1.20793 1.22908 1.19800 1.20954 0.93362 0.99225 0.83612 1.22176 1.02462 1.01119 0.90043 1.23316 0.86065 0.98506 0.95897 1.90830 1.36710 1.85281 1.01236 1.48708 1.62044 1.15372 0.98334 1.19350 0.75056 0.84268 0.85320 1.90801 1.41870 1.17445 1.85538 1.20193 1.07422 0.94606 0.93033 1.21232 0.94183 1.01963 0.88021 1.22043 0.94107 0.92252 1.00754 1.22038 0.94202 0.97182 0.95761 1.21229 0.94211 0.99278 0.90762 1.20190 1.07583 0.97288 0.90235 1.19378 0.74813 0.80512 0.89393 1.90805 1.42474 1.33634 1.68884 0.76735 0.90860 0.91262 0.94308 0.91806 0.90983 0.93080 0.93836 0.91071 0.90685 0.82212 0.79428 0.79476 0.82338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.30 -14.46 19.25 74.32 1.43 -13.03 16 2 C -0.13 -6.36 10.54 31.12 0.33 -6.04 16 3 C 0.27 12.92 5.45 84.57 0.46 13.38 16 4 N -0.60 -29.51 2.50 -712.57 -1.78 -31.29 16 5 C -0.27 -14.87 9.66 84.03 0.81 -14.06 16 6 H 0.08 4.08 7.90 -2.91 -0.02 4.06 16 7 C -0.05 -2.59 4.85 84.86 0.41 -2.18 16 8 N -0.91 -53.72 9.50 21.65 0.21 -53.51 16 9 Si 0.96 45.45 29.61 68.60 2.03 47.48 16 10 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 11 H -0.30 -14.58 7.11 99.48 0.71 -13.88 16 12 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 13 C 0.16 6.28 5.70 86.38 0.49 6.77 16 14 C -0.12 -4.83 5.76 30.59 0.18 -4.65 16 15 C 0.04 1.41 6.40 71.98 0.46 1.87 16 16 O -0.14 -5.43 11.36 -23.06 -0.26 -5.70 16 17 N -0.46 -14.93 3.16 -432.76 -1.37 -16.29 16 18 C 0.57 16.36 8.24 86.82 0.72 17.07 16 19 O -0.48 -16.61 18.02 2.37 0.04 -16.57 16 20 C -0.15 -2.76 6.40 -20.00 -0.13 -2.89 16 21 C -0.04 -0.32 10.09 22.44 0.23 -0.09 16 22 C -0.07 -0.11 10.04 22.36 0.22 0.11 16 23 C -0.07 -0.12 10.04 22.36 0.22 0.10 16 24 C -0.04 -0.34 10.09 22.44 0.23 -0.11 16 25 C -0.15 -2.79 6.41 -20.00 -0.13 -2.92 16 26 C 0.57 16.56 8.24 86.82 0.72 17.27 16 27 O -0.49 -17.07 18.02 2.38 0.04 -17.03 16 28 H 0.22 8.70 7.80 -4.41 -0.03 8.67 16 29 H 0.07 3.91 6.42 -2.39 -0.02 3.89 16 30 H 0.07 2.85 7.98 -2.39 -0.02 2.83 16 31 H 0.25 14.37 8.31 -92.71 -0.77 13.60 16 32 H 0.06 2.43 8.02 -2.39 -0.02 2.41 16 33 H 0.07 2.51 7.95 -2.39 -0.02 2.49 16 34 H 0.05 2.33 7.21 -2.38 -0.02 2.31 16 35 H 0.04 2.06 8.14 -2.39 -0.02 2.04 16 36 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 37 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 38 H 0.16 0.96 8.06 -2.91 -0.02 0.93 16 39 H 0.19 -1.21 8.06 -2.91 -0.02 -1.23 16 40 H 0.19 -1.17 8.06 -2.91 -0.02 -1.19 16 41 H 0.16 1.03 8.06 -2.91 -0.02 1.01 16 Total: -1.00 -80.15 368.89 6.61 -73.54 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: 1.05 Total: 8.77 kcal Atomic # 6 Polarization: 3.95 SS G_CDS: 6.65 Total: 10.60 kcal Atomic # 7 Polarization: -98.15 SS G_CDS: -2.94 Total: -101.10 kcal Atomic # 8 Polarization: -39.12 SS G_CDS: -0.18 Total: -39.29 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.48 kcal Total: -80.15 6.61 -73.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491736445.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.248 kcal (2) G-P(sol) polarization free energy of solvation -80.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.543 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.30 seconds