Wall clock time and date at job start Tue Mar 31 2020 14:46:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.34756 * 126.44020 * 2 1 4 4 C 1.33974 * 107.75356 * 180.26516 * 3 2 1 5 5 N 1.30258 * 108.75662 * 359.73177 * 4 3 2 6 6 C 1.34322 * 126.44608 * 179.81189 * 2 1 3 7 7 C 1.50700 * 126.16472 * 0.02562 * 6 2 1 8 8 N 1.46506 * 109.46772 * 269.70889 * 7 6 2 9 9 C 1.34774 * 120.00160 * 179.97438 * 8 7 6 10 10 O 1.21729 * 119.99853 * 0.02562 * 9 8 7 11 11 C 1.46247 * 120.00271 * 179.97438 * 9 8 7 12 12 C 1.35023 * 120.00027 * 173.07272 * 11 9 8 13 13 C 1.46959 * 120.00110 * 348.86987 * 12 11 9 14 14 C 1.40023 * 120.09856 * 311.82038 * 13 12 11 15 15 C 1.37600 * 119.89487 * 179.78601 * 14 13 12 16 16 C 1.39178 * 120.10231 * 0.49259 * 15 14 13 17 17 O 1.35568 * 119.90183 * 179.76192 * 16 15 14 18 18 C 1.34774 * 117.00207 * 185.61308 * 17 16 15 19 19 H 1.07999 * 120.00396 * 354.90996 * 18 17 16 20 20 C 1.38727 * 120.00250 * 174.90769 * 18 17 16 21 21 N 1.31505 * 119.99991 * 180.02562 * 20 18 17 22 22 Si 1.86795 * 119.99632 * 0.02562 * 20 18 17 23 23 H 1.48501 * 109.47326 * 89.99913 * 22 20 18 24 24 H 1.48503 * 109.47105 * 209.99777 * 22 20 18 25 25 H 1.48494 * 109.47394 * 330.00184 * 22 20 18 26 26 C 1.39175 * 120.19951 * 359.73778 * 16 15 14 27 27 C 1.37598 * 120.10417 * 0.02764 * 26 16 15 28 28 H 1.08995 * 109.47446 * 270.18493 * 1 2 3 29 29 H 1.09006 * 109.47553 * 30.18522 * 1 2 3 30 30 H 1.09001 * 109.46974 * 150.18277 * 1 2 3 31 31 H 1.08000 * 125.61966 * 179.70164 * 4 3 2 32 32 H 1.08998 * 109.47351 * 149.71632 * 7 6 2 33 33 H 1.08995 * 109.47313 * 29.70574 * 7 6 2 34 34 H 0.97003 * 119.99828 * 0.02562 * 8 7 6 35 35 H 1.08003 * 120.00254 * 353.07483 * 11 9 8 36 36 H 1.08005 * 120.00005 * 168.60257 * 12 11 9 37 37 H 1.08000 * 120.05646 * 0.02562 * 14 13 12 38 38 H 1.08000 * 119.95322 * 180.23193 * 15 14 13 39 39 H 0.97005 * 119.99967 * 180.02562 * 21 20 18 40 40 H 1.08004 * 119.94895 * 180.02562 * 26 16 15 41 41 H 1.08002 * 120.04721 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.3074 1.0841 0.0000 4 6 3.5765 0.6548 -0.0059 5 7 3.5781 -0.6477 -0.0037 6 6 2.3049 -1.0805 0.0035 7 6 1.8545 -2.5186 0.0077 8 7 1.7148 -2.9825 1.3904 9 6 1.3194 -4.2464 1.6404 10 8 1.0788 -5.0028 0.7174 11 6 1.1805 -4.7097 3.0206 12 6 0.6522 -5.9261 3.2745 13 6 -0.0047 -6.6811 2.1984 14 6 -0.9505 -6.0550 1.3774 15 6 -1.5597 -6.7647 0.3682 16 6 -1.2447 -8.1057 0.1694 17 8 -1.8509 -8.8024 -0.8231 18 6 -1.5908 -10.1230 -0.8908 19 1 -0.8629 -10.5649 -0.2264 20 6 -2.2579 -10.9151 -1.8139 21 7 -2.0044 -12.2038 -1.8795 22 14 -3.5164 -10.1509 -2.9635 23 1 -2.8418 -9.7021 -4.2080 24 1 -4.5556 -11.1572 -3.2991 25 1 -4.1521 -8.9858 -2.2975 26 6 -0.3087 -8.7335 0.9860 27 6 0.3091 -8.0304 1.9946 28 1 -0.3634 0.0033 1.0276 29 1 -0.3634 0.8883 -0.5167 30 1 -0.3633 -0.8916 -0.5110 31 1 4.4536 1.2850 -0.0120 32 1 2.5930 -3.1322 -0.5084 33 1 0.8944 -2.6002 -0.5016 34 1 1.9062 -2.3797 2.1259 35 1 1.5004 -4.0789 3.8368 36 1 0.7162 -6.3460 4.2675 37 1 -1.1986 -5.0155 1.5336 38 1 -2.2866 -6.2816 -0.2679 39 1 -2.4707 -12.7575 -2.5252 40 1 -0.0670 -9.7742 0.8278 41 1 1.0356 -8.5184 2.6275 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492280857.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:53 Heat of formation + Delta-G solvation = 17.259211 kcal Electronic energy + Delta-G solvation = -26260.741129 eV Core-core repulsion = 22302.396157 eV Total energy + Delta-G solvation = -3958.344972 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.77669 -39.75909 -38.85376 -36.79072 -35.83482 -34.26280 -33.09488 -32.75694 -32.25697 -30.19911 -29.00279 -27.88568 -26.21455 -25.25076 -23.07586 -22.53398 -21.90850 -21.21623 -20.88009 -19.39179 -17.85679 -17.65141 -17.25513 -17.14258 -16.74531 -15.76576 -15.68116 -14.85953 -14.80466 -14.67744 -14.17391 -13.93475 -13.77602 -13.65136 -13.55309 -13.40468 -13.19396 -12.93836 -12.64204 -12.58273 -12.45480 -12.23004 -12.09211 -11.67091 -11.39373 -10.94963 -10.89439 -10.74178 -10.68282 -10.13255 -9.64106 -9.42827 -9.23912 -9.09581 -9.03483 -8.75202 -8.04624 -6.98949 -6.40117 -4.04139 0.99290 1.21936 2.14375 2.33151 2.33923 2.57676 3.24980 3.27841 3.41767 3.42398 3.56757 3.77228 4.25849 4.31344 4.38340 4.62314 4.73486 4.92343 4.96516 5.00438 5.10079 5.13178 5.17814 5.41129 5.43896 5.55279 5.57928 5.68273 5.70677 5.76482 5.87163 6.18701 6.27037 6.34472 6.41991 6.49864 6.66871 6.93221 7.18479 7.30265 7.31489 7.39644 7.59559 7.68689 7.86363 8.08213 8.46856 8.95147 9.59813 10.67317 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.016396 B = 0.002493 C = 0.002286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1707.274324 B =11226.608135 C =12246.419755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.020 4.020 3 O -0.205 6.205 4 C 0.166 3.834 5 N -0.472 5.472 6 C -0.034 4.034 7 C 0.206 3.794 8 N -0.731 5.731 9 C 0.541 3.459 10 O -0.510 6.510 11 C -0.257 4.257 12 C 0.024 3.976 13 C -0.172 4.172 14 C -0.003 4.003 15 C -0.198 4.198 16 C 0.174 3.826 17 O -0.214 6.214 18 C -0.387 4.387 19 H 0.108 0.892 20 C 0.063 3.937 21 N -0.878 5.878 22 Si 0.906 3.094 23 H -0.273 1.273 24 H -0.282 1.282 25 H -0.259 1.259 26 C -0.233 4.233 27 C -0.046 4.046 28 H 0.088 0.912 29 H 0.081 0.919 30 H 0.097 0.903 31 H 0.251 0.749 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.396 0.604 35 H 0.122 0.878 36 H 0.124 0.876 37 H 0.103 0.897 38 H 0.114 0.886 39 H 0.280 0.720 40 H 0.132 0.868 41 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.776 26.060 8.774 28.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.075 4.075 3 O -0.091 6.091 4 C -0.061 4.061 5 N -0.200 5.200 6 C -0.154 4.154 7 C 0.082 3.918 8 N -0.385 5.385 9 C 0.330 3.670 10 O -0.386 6.386 11 C -0.278 4.278 12 C 0.004 3.996 13 C -0.173 4.173 14 C -0.022 4.022 15 C -0.217 4.217 16 C 0.121 3.879 17 O -0.118 6.118 18 C -0.463 4.463 19 H 0.125 0.875 20 C -0.140 4.140 21 N -0.516 5.516 22 Si 0.731 3.269 23 H -0.199 1.199 24 H -0.208 1.208 25 H -0.183 1.183 26 C -0.252 4.252 27 C -0.064 4.064 28 H 0.107 0.893 29 H 0.100 0.900 30 H 0.115 0.885 31 H 0.267 0.733 32 H 0.102 0.898 33 H 0.102 0.898 34 H 0.229 0.771 35 H 0.139 0.861 36 H 0.142 0.858 37 H 0.121 0.879 38 H 0.132 0.868 39 H 0.090 0.910 40 H 0.150 0.850 41 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 6.916 24.995 7.762 27.071 hybrid contribution -0.448 1.023 -0.149 1.126 sum 6.468 26.018 7.613 27.870 Atomic orbital electron populations 1.20391 0.83557 1.04834 1.04255 1.23374 0.95120 0.84084 1.04881 1.84461 1.18500 1.36420 1.69727 1.28054 0.85608 0.91095 1.01302 1.70374 1.22680 1.10261 1.16719 1.21468 0.88304 0.96891 1.08724 1.19323 1.01502 0.86310 0.84644 1.45959 1.71475 1.13610 1.07471 1.18480 0.77178 0.80904 0.90408 1.91011 1.48214 1.53240 1.46124 1.22636 1.10642 0.99594 0.94927 1.22362 0.87875 0.91751 0.97607 1.18349 1.03784 0.94153 1.01029 1.20416 0.93228 0.96460 0.92051 1.19993 1.06459 0.92756 1.02515 1.19266 0.90675 0.91168 0.86768 1.83499 1.62039 1.22619 1.43663 1.20825 1.24577 0.79150 1.21728 0.87491 1.24490 0.97697 0.94489 0.97369 1.69626 1.41985 1.04112 1.35829 0.86176 0.80591 0.79401 0.80729 1.19854 1.20820 1.18299 1.21082 1.02448 1.01643 1.00041 1.20776 0.96925 0.92351 0.96389 0.89342 0.90048 0.88477 0.73334 0.89825 0.89777 0.77080 0.86058 0.85814 0.87907 0.86834 0.91032 0.85031 0.87332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.41 10.22 36.00 0.37 -0.04 16 2 C -0.02 -0.17 7.38 -35.69 -0.26 -0.43 16 3 O -0.20 -1.67 10.78 5.33 0.06 -1.61 16 4 C 0.17 1.19 13.23 52.10 0.69 1.88 16 5 N -0.47 -4.96 11.29 -11.18 -0.13 -5.09 16 6 C -0.03 -0.35 6.47 -82.82 -0.54 -0.88 16 7 C 0.21 2.31 6.01 -5.19 -0.03 2.28 16 8 N -0.73 -7.98 5.54 -62.94 -0.35 -8.33 16 9 C 0.54 7.59 6.94 -13.04 -0.09 7.49 16 10 O -0.51 -9.48 12.49 5.16 0.06 -9.42 16 11 C -0.26 -3.06 9.92 -37.51 -0.37 -3.43 16 12 C 0.02 0.31 9.77 -37.19 -0.36 -0.05 16 13 C -0.17 -3.04 4.34 -105.03 -0.46 -3.50 16 14 C 0.00 -0.06 6.78 -39.15 -0.27 -0.32 16 15 C -0.20 -4.21 9.97 -39.47 -0.39 -4.60 16 16 C 0.17 4.23 6.66 -38.88 -0.26 3.97 16 17 O -0.21 -5.83 8.57 0.77 0.01 -5.82 16 18 C -0.39 -11.15 9.94 30.91 0.31 -10.85 16 19 H 0.11 3.14 5.41 -52.49 -0.28 2.86 16 20 C 0.06 1.79 5.49 -17.51 -0.10 1.70 16 21 N -0.88 -25.65 13.96 55.48 0.77 -24.88 16 22 Si 0.91 22.02 28.62 -169.99 -4.86 17.15 16 23 H -0.27 -6.55 7.11 56.52 0.40 -6.14 16 24 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 25 H -0.26 -6.30 7.11 56.52 0.40 -5.90 16 26 C -0.23 -5.28 9.14 -39.47 -0.36 -5.65 16 27 C -0.05 -0.88 9.78 -39.15 -0.38 -1.27 16 28 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.10 0.53 7.16 -51.93 -0.37 0.16 16 31 H 0.25 0.54 8.06 -52.49 -0.42 0.12 16 32 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 33 H 0.08 0.91 7.16 -51.93 -0.37 0.54 16 34 H 0.40 3.42 8.44 -40.82 -0.34 3.08 16 35 H 0.12 1.02 8.06 -52.48 -0.42 0.60 16 36 H 0.12 1.27 8.06 -52.48 -0.42 0.84 16 37 H 0.10 1.68 7.46 -52.49 -0.39 1.28 16 38 H 0.11 2.26 8.06 -52.49 -0.42 1.84 16 39 H 0.28 7.53 8.31 -40.82 -0.34 7.19 16 40 H 0.13 3.10 5.62 -52.48 -0.29 2.81 16 41 H 0.11 1.77 8.06 -52.49 -0.42 1.35 16 LS Contribution 358.92 15.07 5.41 5.41 Total: -1.00 -35.13 358.92 -6.11 -41.24 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: -4.58 Total: 5.05 kcal Atomic # 6 Polarization: -11.19 SS G_CDS: -2.51 Total: -13.70 kcal Atomic # 7 Polarization: -38.60 SS G_CDS: 0.30 Total: -38.30 kcal Atomic # 8 Polarization: -16.98 SS G_CDS: 0.13 Total: -16.85 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -4.86 Total: 17.15 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -35.13 -6.11 -41.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492280857.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.495 kcal (2) G-P(sol) polarization free energy of solvation -35.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.236 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds