Wall clock time and date at job start Tue Mar 31 2020 14:46:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.34756 * 126.44020 * 2 1 4 4 C 1.33974 * 107.75356 * 180.26516 * 3 2 1 5 5 N 1.30258 * 108.75662 * 359.73177 * 4 3 2 6 6 C 1.34322 * 126.44608 * 179.81189 * 2 1 3 7 7 C 1.50700 * 126.16472 * 0.02562 * 6 2 1 8 8 N 1.46506 * 109.46772 * 269.70889 * 7 6 2 9 9 C 1.34774 * 120.00160 * 179.97438 * 8 7 6 10 10 O 1.21729 * 119.99853 * 0.02562 * 9 8 7 11 11 C 1.46247 * 120.00271 * 179.97438 * 9 8 7 12 12 C 1.35023 * 120.00027 * 173.07272 * 11 9 8 13 13 C 1.46959 * 120.00110 * 348.86987 * 12 11 9 14 14 C 1.40023 * 120.09856 * 311.82038 * 13 12 11 15 15 C 1.37600 * 119.89487 * 179.78601 * 14 13 12 16 16 C 1.39178 * 120.10231 * 0.49259 * 15 14 13 17 17 O 1.35568 * 119.90183 * 179.76192 * 16 15 14 18 18 C 1.34774 * 117.00207 * 185.61308 * 17 16 15 19 19 H 1.07999 * 120.00396 * 354.90996 * 18 17 16 20 20 C 1.38727 * 120.00250 * 174.90769 * 18 17 16 21 21 N 1.31505 * 119.99991 * 180.02562 * 20 18 17 22 22 Si 1.86795 * 119.99632 * 0.02562 * 20 18 17 23 23 H 1.48501 * 109.47326 * 89.99913 * 22 20 18 24 24 H 1.48503 * 109.47105 * 209.99777 * 22 20 18 25 25 H 1.48494 * 109.47394 * 330.00184 * 22 20 18 26 26 C 1.39175 * 120.19951 * 359.73778 * 16 15 14 27 27 C 1.37598 * 120.10417 * 0.02764 * 26 16 15 28 28 H 1.08995 * 109.47446 * 270.18493 * 1 2 3 29 29 H 1.09006 * 109.47553 * 30.18522 * 1 2 3 30 30 H 1.09001 * 109.46974 * 150.18277 * 1 2 3 31 31 H 1.08000 * 125.61966 * 179.70164 * 4 3 2 32 32 H 1.08998 * 109.47351 * 149.71632 * 7 6 2 33 33 H 1.08995 * 109.47313 * 29.70574 * 7 6 2 34 34 H 0.97003 * 119.99828 * 0.02562 * 8 7 6 35 35 H 1.08003 * 120.00254 * 353.07483 * 11 9 8 36 36 H 1.08005 * 120.00005 * 168.60257 * 12 11 9 37 37 H 1.08000 * 120.05646 * 0.02562 * 14 13 12 38 38 H 1.08000 * 119.95322 * 180.23193 * 15 14 13 39 39 H 0.97005 * 119.99967 * 180.02562 * 21 20 18 40 40 H 1.08004 * 119.94895 * 180.02562 * 26 16 15 41 41 H 1.08002 * 120.04721 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.3074 1.0841 0.0000 4 6 3.5765 0.6548 -0.0059 5 7 3.5781 -0.6477 -0.0037 6 6 2.3049 -1.0805 0.0035 7 6 1.8545 -2.5186 0.0077 8 7 1.7148 -2.9825 1.3904 9 6 1.3194 -4.2464 1.6404 10 8 1.0788 -5.0028 0.7174 11 6 1.1805 -4.7097 3.0206 12 6 0.6522 -5.9261 3.2745 13 6 -0.0047 -6.6811 2.1984 14 6 -0.9505 -6.0550 1.3774 15 6 -1.5597 -6.7647 0.3682 16 6 -1.2447 -8.1057 0.1694 17 8 -1.8509 -8.8024 -0.8231 18 6 -1.5908 -10.1230 -0.8908 19 1 -0.8629 -10.5649 -0.2264 20 6 -2.2579 -10.9151 -1.8139 21 7 -2.0044 -12.2038 -1.8795 22 14 -3.5164 -10.1509 -2.9635 23 1 -2.8418 -9.7021 -4.2080 24 1 -4.5556 -11.1572 -3.2991 25 1 -4.1521 -8.9858 -2.2975 26 6 -0.3087 -8.7335 0.9860 27 6 0.3091 -8.0304 1.9946 28 1 -0.3634 0.0033 1.0276 29 1 -0.3634 0.8883 -0.5167 30 1 -0.3633 -0.8916 -0.5110 31 1 4.4536 1.2850 -0.0120 32 1 2.5930 -3.1322 -0.5084 33 1 0.8944 -2.6002 -0.5016 34 1 1.9062 -2.3797 2.1259 35 1 1.5004 -4.0789 3.8368 36 1 0.7162 -6.3460 4.2675 37 1 -1.1986 -5.0155 1.5336 38 1 -2.2866 -6.2816 -0.2679 39 1 -2.4707 -12.7575 -2.5252 40 1 -0.0670 -9.7742 0.8278 41 1 1.0356 -8.5184 2.6275 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492280857.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:52 Heat of formation + Delta-G solvation = -9.594720 kcal Electronic energy + Delta-G solvation = -26261.905603 eV Core-core repulsion = 22302.396157 eV Total energy + Delta-G solvation = -3959.509446 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -44.39915 -41.10224 -40.44365 -38.35295 -36.75782 -35.11254 -34.63603 -34.08673 -33.40150 -31.83763 -30.19928 -28.96179 -27.37409 -26.77203 -24.25649 -23.57783 -23.24677 -22.36447 -21.85048 -20.58476 -19.71859 -19.14272 -18.36376 -17.98281 -17.67393 -16.83434 -16.56127 -16.49137 -16.08832 -15.78738 -15.71013 -15.41080 -15.29586 -14.76049 -14.68904 -14.33384 -14.26808 -14.12049 -13.97450 -13.85438 -13.75751 -13.48793 -13.15556 -13.06247 -12.65251 -12.49190 -12.36048 -12.28139 -11.94373 -11.55311 -11.31225 -11.02684 -10.75533 -10.45026 -10.07661 -9.76142 -9.62629 -8.62939 -8.50789 -6.21839 0.01968 0.39200 0.69539 1.05513 1.29587 1.35983 1.47323 1.50657 1.79659 2.27641 2.44403 2.52813 2.79771 3.11512 3.18270 3.19287 3.68730 3.75068 3.98164 4.06498 4.13906 4.17152 4.21813 4.48241 4.54173 4.56047 4.59666 4.67145 4.73075 4.79333 4.95672 4.99230 5.14718 5.18745 5.23465 5.27486 5.40549 5.42895 5.46276 5.68554 5.78773 5.82545 5.91832 6.28088 6.65559 6.69022 6.83261 7.40410 7.59476 8.60783 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.016396 B = 0.002493 C = 0.002286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1707.274324 B =11226.608135 C =12246.419755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.013 4.013 3 O -0.208 6.208 4 C 0.183 3.817 5 N -0.516 5.516 6 C -0.057 4.057 7 C 0.211 3.789 8 N -0.711 5.711 9 C 0.531 3.469 10 O -0.564 6.564 11 C -0.222 4.222 12 C 0.002 3.998 13 C -0.142 4.142 14 C -0.002 4.002 15 C -0.202 4.202 16 C 0.129 3.871 17 O -0.244 6.244 18 C -0.400 4.400 19 H 0.081 0.919 20 C 0.010 3.990 21 N -0.922 5.922 22 Si 0.971 3.029 23 H -0.268 1.268 24 H -0.264 1.264 25 H -0.263 1.263 26 C -0.249 4.249 27 C -0.058 4.058 28 H 0.104 0.896 29 H 0.094 0.906 30 H 0.095 0.905 31 H 0.294 0.706 32 H 0.055 0.945 33 H 0.085 0.915 34 H 0.411 0.589 35 H 0.172 0.828 36 H 0.168 0.832 37 H 0.132 0.868 38 H 0.121 0.879 39 H 0.285 0.715 40 H 0.107 0.893 41 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.359 30.590 11.197 33.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.068 4.068 3 O -0.095 6.095 4 C -0.044 4.044 5 N -0.244 5.244 6 C -0.176 4.176 7 C 0.087 3.913 8 N -0.364 5.364 9 C 0.321 3.679 10 O -0.444 6.444 11 C -0.242 4.242 12 C -0.017 4.017 13 C -0.143 4.143 14 C -0.020 4.020 15 C -0.221 4.221 16 C 0.080 3.920 17 O -0.152 6.152 18 C -0.477 4.477 19 H 0.098 0.902 20 C -0.189 4.189 21 N -0.563 5.563 22 Si 0.793 3.207 23 H -0.193 1.193 24 H -0.188 1.188 25 H -0.187 1.187 26 C -0.269 4.269 27 C -0.076 4.076 28 H 0.122 0.878 29 H 0.113 0.887 30 H 0.113 0.887 31 H 0.309 0.691 32 H 0.074 0.926 33 H 0.103 0.897 34 H 0.247 0.753 35 H 0.189 0.811 36 H 0.185 0.815 37 H 0.150 0.850 38 H 0.139 0.861 39 H 0.095 0.905 40 H 0.125 0.875 41 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 7.531 29.591 10.243 32.207 hybrid contribution -0.319 0.059 -0.624 0.704 sum 7.212 29.650 9.619 31.994 Atomic orbital electron populations 1.20530 0.81784 1.05419 1.05381 1.23735 0.96087 0.83589 1.03406 1.84500 1.18933 1.36286 1.69743 1.29023 0.86275 0.90621 0.98474 1.70336 1.23138 1.12094 1.18804 1.21265 0.88861 0.96457 1.10988 1.19152 1.00726 0.86993 0.84441 1.45815 1.69579 1.12941 1.08039 1.19044 0.76618 0.81228 0.90997 1.91016 1.50678 1.54818 1.47854 1.23041 1.07652 0.98781 0.94760 1.22573 0.89259 0.91965 0.97939 1.18917 1.01461 0.93521 1.00390 1.20775 0.92651 0.97509 0.91033 1.20271 1.06737 0.91638 1.03477 1.19764 0.92132 0.92425 0.87695 1.83441 1.64141 1.21591 1.45990 1.20748 1.24585 0.80452 1.21873 0.90190 1.25302 0.99706 0.94933 0.98923 1.69707 1.43872 1.05281 1.37408 0.85213 0.78387 0.78607 0.78464 1.19261 1.18819 1.18723 1.21115 1.03230 1.01027 1.01482 1.21123 0.97254 0.93419 0.95771 0.87812 0.88714 0.88656 0.69140 0.92632 0.89710 0.75279 0.81051 0.81481 0.85010 0.86141 0.90509 0.87504 0.84285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.63 10.22 71.23 0.73 0.09 16 2 C -0.01 -0.19 7.38 24.79 0.18 -0.01 16 3 O -0.21 -2.79 10.78 -3.84 -0.04 -2.83 16 4 C 0.18 2.10 13.23 130.48 1.73 3.83 16 5 N -0.52 -9.93 11.29 -304.06 -3.43 -13.36 16 6 C -0.06 -1.07 6.47 41.26 0.27 -0.80 16 7 C 0.21 4.53 6.01 85.63 0.51 5.04 16 8 N -0.71 -13.47 5.54 -471.23 -2.61 -16.08 16 9 C 0.53 13.18 6.94 86.32 0.60 13.78 16 10 O -0.56 -20.16 12.49 -4.44 -0.06 -20.22 16 11 C -0.22 -4.03 9.92 23.61 0.23 -3.80 16 12 C 0.00 0.04 9.77 23.82 0.23 0.27 16 13 C -0.14 -4.68 4.34 -20.13 -0.09 -4.77 16 14 C 0.00 -0.05 6.78 22.55 0.15 0.10 16 15 C -0.20 -8.73 9.97 22.34 0.22 -8.51 16 16 C 0.13 6.61 6.66 22.72 0.15 6.77 16 17 O -0.24 -14.20 8.57 -20.18 -0.17 -14.37 16 18 C -0.40 -24.82 9.94 67.94 0.68 -24.14 16 19 H 0.08 5.19 5.41 -2.91 -0.02 5.18 16 20 C 0.01 0.59 5.49 84.86 0.47 1.05 16 21 N -0.92 -56.76 13.96 21.62 0.30 -56.46 16 22 Si 0.97 47.27 28.62 68.60 1.96 49.23 16 23 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 24 H -0.26 -11.83 7.11 99.48 0.71 -11.12 16 25 H -0.26 -12.79 7.11 99.48 0.71 -12.08 16 26 C -0.25 -11.96 9.14 22.34 0.20 -11.76 16 27 C -0.06 -2.18 9.78 22.55 0.22 -1.96 16 28 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.09 0.57 8.14 -2.38 -0.02 0.55 16 30 H 0.09 0.86 7.16 -2.39 -0.02 0.84 16 31 H 0.29 0.12 8.06 -2.91 -0.02 0.09 16 32 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.08 1.79 7.16 -2.39 -0.02 1.77 16 34 H 0.41 5.45 8.44 -92.71 -0.78 4.67 16 35 H 0.17 1.53 8.06 -2.91 -0.02 1.51 16 36 H 0.17 2.31 8.06 -2.91 -0.02 2.29 16 37 H 0.13 3.88 7.46 -2.91 -0.02 3.86 16 38 H 0.12 4.89 8.06 -2.91 -0.02 4.86 16 39 H 0.29 16.04 8.31 -92.70 -0.77 15.27 16 40 H 0.11 5.56 5.62 -2.91 -0.02 5.55 16 41 H 0.14 4.31 8.06 -2.91 -0.02 4.29 16 Total: -1.00 -83.99 358.92 2.74 -81.25 By element: Atomic # 1 Polarization: 17.36 SS G_CDS: 0.30 Total: 17.67 kcal Atomic # 6 Polarization: -31.31 SS G_CDS: 6.49 Total: -24.82 kcal Atomic # 7 Polarization: -80.16 SS G_CDS: -5.74 Total: -85.91 kcal Atomic # 8 Polarization: -37.15 SS G_CDS: -0.27 Total: -37.42 kcal Atomic # 14 Polarization: 47.27 SS G_CDS: 1.96 Total: 49.23 kcal Total: -83.99 2.74 -81.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492280857.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.654 kcal (2) G-P(sol) polarization free energy of solvation -83.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds