Wall clock time and date at job start Tue Mar 31 2020 14:46:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.34750 * 126.44635 * 2 1 4 4 C 1.33971 * 107.75807 * 180.26289 * 3 2 1 5 5 N 1.30258 * 108.75646 * 359.73498 * 4 3 2 6 6 C 1.34334 * 126.44095 * 179.81106 * 2 1 3 7 7 C 1.50697 * 126.16961 * 0.02562 * 6 2 1 8 8 N 1.46495 * 109.47601 * 269.71599 * 7 6 2 9 9 C 1.34770 * 120.00491 * 179.97438 * 8 7 6 10 10 O 1.21722 * 119.99697 * 0.02562 * 9 8 7 11 11 C 1.46250 * 120.00046 * 179.97438 * 9 8 7 12 12 C 1.35031 * 119.99722 * 180.02562 * 11 9 8 13 13 C 1.46959 * 119.99891 * 180.27844 * 12 11 9 14 14 C 1.40027 * 120.10020 * 359.44219 * 13 12 11 15 15 C 1.37601 * 119.89865 * 179.79365 * 14 13 12 16 16 C 1.39178 * 120.09610 * 0.48590 * 15 14 13 17 17 O 1.35575 * 119.89259 * 179.76441 * 16 15 14 18 18 C 1.34788 * 116.99533 * 174.42515 * 17 16 15 19 19 H 1.08001 * 120.00124 * 5.05799 * 18 17 16 20 20 C 1.38720 * 119.99795 * 185.06035 * 18 17 16 21 21 N 1.31506 * 120.00124 * 179.97438 * 20 18 17 22 22 Si 1.86805 * 119.99835 * 359.97438 * 20 18 17 23 23 H 1.48496 * 109.47167 * 90.00581 * 22 20 18 24 24 H 1.48508 * 109.46838 * 210.00252 * 22 20 18 25 25 H 1.48498 * 109.46985 * 330.00109 * 22 20 18 26 26 C 1.39170 * 120.20621 * 359.74800 * 16 15 14 27 27 C 1.37600 * 120.10262 * 0.02562 * 26 16 15 28 28 H 1.08992 * 109.47262 * 270.18216 * 1 2 3 29 29 H 1.08995 * 109.47055 * 30.18920 * 1 2 3 30 30 H 1.09000 * 109.46612 * 150.18601 * 1 2 3 31 31 H 1.07997 * 125.62115 * 179.70444 * 4 3 2 32 32 H 1.08999 * 109.47323 * 149.71212 * 7 6 2 33 33 H 1.09009 * 109.46585 * 29.71761 * 7 6 2 34 34 H 0.96999 * 119.99771 * 359.97438 * 8 7 6 35 35 H 1.08000 * 120.00173 * 359.97438 * 11 9 8 36 36 H 1.08000 * 120.00105 * 359.97438 * 12 11 9 37 37 H 1.08005 * 120.04941 * 0.02562 * 14 13 12 38 38 H 1.07995 * 119.95289 * 180.23378 * 15 14 13 39 39 H 0.96995 * 120.00217 * 179.97438 * 21 20 18 40 40 H 1.08006 * 119.94848 * 179.97438 * 26 16 15 41 41 H 1.07997 * 120.05056 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3075 1.0839 0.0000 4 6 3.5766 0.6547 -0.0059 5 7 3.5782 -0.6479 -0.0037 6 6 2.3049 -1.0807 0.0036 7 6 1.8546 -2.5188 0.0078 8 7 1.7146 -2.9827 1.3902 9 6 1.3192 -4.2466 1.6402 10 8 1.0788 -5.0029 0.7172 11 6 1.1801 -4.7099 3.0204 12 6 0.7844 -5.9764 3.2708 13 6 0.6387 -6.4401 4.6576 14 6 0.9208 -5.5739 5.7210 15 6 0.7789 -6.0111 7.0180 16 6 0.3653 -7.3152 7.2736 17 8 0.2314 -7.7431 8.5531 18 6 -0.2821 -8.9759 8.7354 19 1 -0.4894 -9.6060 7.8830 20 6 -0.5442 -9.4354 10.0177 21 7 -1.0457 -10.6380 10.1956 22 14 -0.1849 -8.3457 11.4919 23 1 -1.3840 -7.5286 11.8074 24 1 0.1583 -9.1934 12.6620 25 1 0.9566 -7.4493 11.1783 26 6 0.0884 -8.1811 6.2199 27 6 0.2231 -7.7513 4.9197 28 1 -0.3633 0.0033 1.0276 29 1 -0.3633 0.8882 -0.5167 30 1 -0.3632 -0.8917 -0.5110 31 1 4.4537 1.2847 -0.0119 32 1 2.5930 -3.1323 -0.5084 33 1 0.8944 -2.6002 -0.5018 34 1 1.9066 -2.3802 2.1258 35 1 1.3946 -4.0393 3.8393 36 1 0.5703 -6.6472 2.4518 37 1 1.2458 -4.5630 5.5235 38 1 0.9926 -5.3426 7.8388 39 1 -1.2286 -10.9594 11.0923 40 1 -0.2318 -9.1924 6.4230 41 1 0.0076 -8.4239 4.1027 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492280859.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:57 Heat of formation + Delta-G solvation = 1.081554 kcal Electronic energy + Delta-G solvation = -25116.594132 eV Core-core repulsion = 21157.547644 eV Total energy + Delta-G solvation = -3959.046488 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.84770 -39.66145 -39.26713 -37.08865 -36.06316 -34.38683 -33.25876 -32.84600 -32.45443 -30.53459 -29.16304 -28.02093 -26.30677 -25.50569 -23.18119 -22.64454 -22.28187 -21.29058 -20.79544 -19.42272 -18.20083 -17.64321 -17.44406 -17.25258 -16.90471 -15.90629 -15.78164 -15.07024 -14.97338 -14.88425 -14.30538 -14.11745 -14.01751 -13.97782 -13.61373 -13.55511 -13.34772 -12.85047 -12.82497 -12.65750 -12.59576 -12.40745 -11.88037 -11.82328 -11.72877 -11.20084 -11.02539 -10.96953 -10.76747 -10.28122 -9.95880 -9.66518 -9.55116 -9.22965 -9.18672 -8.91715 -8.47116 -7.24511 -6.60496 -4.24287 0.92163 0.98302 2.03339 2.06647 2.26544 2.46882 3.11593 3.15440 3.28760 3.31533 3.50553 3.68827 4.08618 4.22646 4.28834 4.42861 4.63052 4.64683 4.87959 4.91719 4.93805 5.02009 5.16783 5.27873 5.33214 5.43016 5.49094 5.53636 5.59313 5.61776 5.78214 5.93922 6.02002 6.22199 6.30256 6.42211 6.52833 6.67331 6.92576 7.08775 7.15985 7.23125 7.41638 7.46394 7.62667 7.83992 8.25884 8.72795 9.33031 10.45745 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.025080 B = 0.001757 C = 0.001690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.152749 B =15928.529151 C =16568.130304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.019 4.019 3 O -0.204 6.204 4 C 0.169 3.831 5 N -0.473 5.473 6 C -0.037 4.037 7 C 0.207 3.793 8 N -0.728 5.728 9 C 0.558 3.442 10 O -0.556 6.556 11 C -0.277 4.277 12 C 0.037 3.963 13 C -0.190 4.190 14 C -0.045 4.045 15 C -0.200 4.200 16 C 0.173 3.827 17 O -0.202 6.202 18 C -0.392 4.392 19 H 0.111 0.889 20 C 0.066 3.934 21 N -0.867 5.867 22 Si 0.907 3.093 23 H -0.271 1.271 24 H -0.280 1.280 25 H -0.258 1.258 26 C -0.230 4.230 27 C -0.037 4.037 28 H 0.089 0.911 29 H 0.081 0.919 30 H 0.095 0.905 31 H 0.252 0.748 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.401 0.599 35 H 0.123 0.877 36 H 0.125 0.875 37 H 0.120 0.880 38 H 0.121 0.879 39 H 0.283 0.717 40 H 0.138 0.862 41 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.510 21.816 -17.446 28.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.073 4.073 3 O -0.090 6.090 4 C -0.058 4.058 5 N -0.201 5.201 6 C -0.157 4.157 7 C 0.083 3.917 8 N -0.381 5.381 9 C 0.350 3.650 10 O -0.437 6.437 11 C -0.298 4.298 12 C 0.017 3.983 13 C -0.191 4.191 14 C -0.063 4.063 15 C -0.219 4.219 16 C 0.119 3.881 17 O -0.105 6.105 18 C -0.467 4.467 19 H 0.128 0.872 20 C -0.139 4.139 21 N -0.502 5.502 22 Si 0.732 3.268 23 H -0.196 1.196 24 H -0.205 1.205 25 H -0.182 1.182 26 C -0.249 4.249 27 C -0.055 4.055 28 H 0.108 0.892 29 H 0.100 0.900 30 H 0.114 0.886 31 H 0.267 0.733 32 H 0.102 0.898 33 H 0.101 0.899 34 H 0.235 0.765 35 H 0.141 0.859 36 H 0.143 0.857 37 H 0.137 0.863 38 H 0.139 0.861 39 H 0.093 0.907 40 H 0.155 0.845 41 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 4.840 20.845 -17.706 27.775 hybrid contribution -0.127 1.083 1.026 1.497 sum 4.712 21.928 -16.680 27.951 Atomic orbital electron populations 1.20393 0.83562 1.04716 1.04399 1.23377 0.95134 0.84109 1.04729 1.84466 1.18509 1.36381 1.69644 1.28074 0.85607 0.91057 1.01089 1.70371 1.22581 1.10312 1.16787 1.21429 0.88398 0.96786 1.09058 1.19324 1.01341 0.86522 0.84558 1.45840 1.70776 1.13712 1.07727 1.18388 0.75881 0.80760 0.90002 1.90791 1.51441 1.54673 1.46747 1.22426 1.14402 0.98690 0.94329 1.22308 0.86558 0.94273 0.95155 1.18525 1.13292 0.95488 0.91749 1.20886 0.96010 0.98142 0.91297 1.20146 1.10637 0.94284 0.96820 1.19364 0.92129 0.92283 0.84333 1.83508 1.70432 1.34251 1.22336 1.20880 1.41316 0.88274 0.96194 0.87182 1.24541 0.95084 0.96095 0.98220 1.69613 1.40016 1.16334 1.24276 0.86158 0.80043 0.80245 0.80383 1.19642 1.20520 1.18212 1.21223 1.09853 1.01795 0.92015 1.21047 0.94303 0.94032 0.96109 0.89205 0.89997 0.88609 0.73255 0.89821 0.89861 0.76534 0.85883 0.85691 0.86263 0.86137 0.90657 0.84490 0.86485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.34 10.22 36.01 0.37 0.03 16 2 C -0.02 -0.14 7.39 -35.69 -0.26 -0.41 16 3 O -0.20 -1.52 10.78 5.36 0.06 -1.46 16 4 C 0.17 1.10 13.23 52.09 0.69 1.79 16 5 N -0.47 -4.58 11.29 -11.18 -0.13 -4.71 16 6 C -0.04 -0.34 6.48 -82.81 -0.54 -0.88 16 7 C 0.21 2.02 6.01 -5.20 -0.03 1.99 16 8 N -0.73 -7.54 5.54 -62.94 -0.35 -7.89 16 9 C 0.56 7.48 7.74 -13.04 -0.10 7.38 16 10 O -0.56 -9.33 16.23 5.17 0.08 -9.25 16 11 C -0.28 -3.59 9.41 -37.50 -0.35 -3.94 16 12 C 0.04 0.53 9.45 -37.19 -0.35 0.18 16 13 C -0.19 -3.08 5.87 -105.03 -0.62 -3.69 16 14 C -0.05 -0.72 9.40 -39.14 -0.37 -1.09 16 15 C -0.20 -3.69 9.97 -39.47 -0.39 -4.08 16 16 C 0.17 3.77 6.66 -38.89 -0.26 3.51 16 17 O -0.20 -5.05 8.57 0.70 0.01 -5.04 16 18 C -0.39 -10.48 9.94 30.91 0.31 -10.17 16 19 H 0.11 3.00 5.41 -52.49 -0.28 2.71 16 20 C 0.07 1.76 5.49 -17.51 -0.10 1.66 16 21 N -0.87 -23.88 13.96 55.48 0.77 -23.11 16 22 Si 0.91 20.57 28.62 -169.99 -4.86 15.70 16 23 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 24 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 25 H -0.26 -5.87 7.11 56.52 0.40 -5.47 16 26 C -0.23 -4.68 9.14 -39.47 -0.36 -5.04 16 27 C -0.04 -0.63 9.78 -39.15 -0.38 -1.02 16 28 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.10 0.39 7.16 -51.93 -0.37 0.01 16 31 H 0.25 0.40 8.06 -52.49 -0.42 -0.02 16 32 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.08 0.73 7.16 -51.92 -0.37 0.36 16 34 H 0.40 3.45 8.44 -40.82 -0.34 3.11 16 35 H 0.12 1.35 6.07 -52.49 -0.32 1.03 16 36 H 0.13 1.81 7.52 -52.49 -0.39 1.41 16 37 H 0.12 1.52 6.16 -52.48 -0.32 1.20 16 38 H 0.12 2.04 8.06 -52.49 -0.42 1.62 16 39 H 0.28 7.18 8.31 -40.82 -0.34 6.84 16 40 H 0.14 2.91 5.62 -52.48 -0.29 2.62 16 41 H 0.12 1.73 8.06 -52.49 -0.42 1.31 16 LS Contribution 362.94 15.07 5.47 5.47 Total: -1.00 -32.30 362.94 -6.07 -38.37 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: -4.37 Total: 5.67 kcal Atomic # 6 Polarization: -11.01 SS G_CDS: -2.75 Total: -13.76 kcal Atomic # 7 Polarization: -36.01 SS G_CDS: 0.30 Total: -35.71 kcal Atomic # 8 Polarization: -15.90 SS G_CDS: 0.15 Total: -15.75 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -4.86 Total: 15.70 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.30 -6.07 -38.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492280859.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.450 kcal (2) G-P(sol) polarization free energy of solvation -32.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.368 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds