Wall clock time and date at job start Tue Mar 31 2020 14:46:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.34750 * 126.44635 * 2 1 4 4 C 1.33971 * 107.75807 * 180.26289 * 3 2 1 5 5 N 1.30258 * 108.75646 * 359.73498 * 4 3 2 6 6 C 1.34334 * 126.44095 * 179.81106 * 2 1 3 7 7 C 1.50697 * 126.16961 * 0.02562 * 6 2 1 8 8 N 1.46495 * 109.47601 * 269.71599 * 7 6 2 9 9 C 1.34770 * 120.00491 * 179.97438 * 8 7 6 10 10 O 1.21722 * 119.99697 * 0.02562 * 9 8 7 11 11 C 1.46250 * 120.00046 * 179.97438 * 9 8 7 12 12 C 1.35031 * 119.99722 * 180.02562 * 11 9 8 13 13 C 1.46959 * 119.99891 * 180.27844 * 12 11 9 14 14 C 1.40027 * 120.10020 * 359.44219 * 13 12 11 15 15 C 1.37601 * 119.89865 * 179.79365 * 14 13 12 16 16 C 1.39178 * 120.09610 * 0.48590 * 15 14 13 17 17 O 1.35575 * 119.89259 * 179.76441 * 16 15 14 18 18 C 1.34788 * 116.99533 * 174.42515 * 17 16 15 19 19 H 1.08001 * 120.00124 * 5.05799 * 18 17 16 20 20 C 1.38720 * 119.99795 * 185.06035 * 18 17 16 21 21 N 1.31506 * 120.00124 * 179.97438 * 20 18 17 22 22 Si 1.86805 * 119.99835 * 359.97438 * 20 18 17 23 23 H 1.48496 * 109.47167 * 90.00581 * 22 20 18 24 24 H 1.48508 * 109.46838 * 210.00252 * 22 20 18 25 25 H 1.48498 * 109.46985 * 330.00109 * 22 20 18 26 26 C 1.39170 * 120.20621 * 359.74800 * 16 15 14 27 27 C 1.37600 * 120.10262 * 0.02562 * 26 16 15 28 28 H 1.08992 * 109.47262 * 270.18216 * 1 2 3 29 29 H 1.08995 * 109.47055 * 30.18920 * 1 2 3 30 30 H 1.09000 * 109.46612 * 150.18601 * 1 2 3 31 31 H 1.07997 * 125.62115 * 179.70444 * 4 3 2 32 32 H 1.08999 * 109.47323 * 149.71212 * 7 6 2 33 33 H 1.09009 * 109.46585 * 29.71761 * 7 6 2 34 34 H 0.96999 * 119.99771 * 359.97438 * 8 7 6 35 35 H 1.08000 * 120.00173 * 359.97438 * 11 9 8 36 36 H 1.08000 * 120.00105 * 359.97438 * 12 11 9 37 37 H 1.08005 * 120.04941 * 0.02562 * 14 13 12 38 38 H 1.07995 * 119.95289 * 180.23378 * 15 14 13 39 39 H 0.96995 * 120.00217 * 179.97438 * 21 20 18 40 40 H 1.08006 * 119.94848 * 179.97438 * 26 16 15 41 41 H 1.07997 * 120.05056 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3075 1.0839 0.0000 4 6 3.5766 0.6547 -0.0059 5 7 3.5782 -0.6479 -0.0037 6 6 2.3049 -1.0807 0.0036 7 6 1.8546 -2.5188 0.0078 8 7 1.7146 -2.9827 1.3902 9 6 1.3192 -4.2466 1.6402 10 8 1.0788 -5.0029 0.7172 11 6 1.1801 -4.7099 3.0204 12 6 0.7844 -5.9764 3.2708 13 6 0.6387 -6.4401 4.6576 14 6 0.9208 -5.5739 5.7210 15 6 0.7789 -6.0111 7.0180 16 6 0.3653 -7.3152 7.2736 17 8 0.2314 -7.7431 8.5531 18 6 -0.2821 -8.9759 8.7354 19 1 -0.4894 -9.6060 7.8830 20 6 -0.5442 -9.4354 10.0177 21 7 -1.0457 -10.6380 10.1956 22 14 -0.1849 -8.3457 11.4919 23 1 -1.3840 -7.5286 11.8074 24 1 0.1583 -9.1934 12.6620 25 1 0.9566 -7.4493 11.1783 26 6 0.0884 -8.1811 6.2199 27 6 0.2231 -7.7513 4.9197 28 1 -0.3633 0.0033 1.0276 29 1 -0.3633 0.8882 -0.5167 30 1 -0.3632 -0.8917 -0.5110 31 1 4.4537 1.2847 -0.0119 32 1 2.5930 -3.1323 -0.5084 33 1 0.8944 -2.6002 -0.5018 34 1 1.9066 -2.3802 2.1258 35 1 1.3946 -4.0393 3.8393 36 1 0.5703 -6.6472 2.4518 37 1 1.2458 -4.5630 5.5235 38 1 0.9926 -5.3426 7.8388 39 1 -1.2286 -10.9594 11.0923 40 1 -0.2318 -9.1924 6.4230 41 1 0.0076 -8.4239 4.1027 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492280859.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:55 Heat of formation + Delta-G solvation = -22.438672 kcal Electronic energy + Delta-G solvation = -25117.614046 eV Core-core repulsion = 21157.547644 eV Total energy + Delta-G solvation = -3960.066401 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -44.39492 -41.00610 -40.60636 -38.61278 -36.84129 -35.14026 -34.76068 -34.19129 -33.40836 -32.00273 -30.28566 -28.97652 -27.47945 -26.76391 -24.40097 -23.77181 -23.25276 -22.11660 -21.85866 -20.69433 -19.73663 -19.15974 -18.49623 -18.01172 -17.68384 -16.93638 -16.54035 -16.50368 -16.37745 -15.79431 -15.64246 -15.60489 -15.47119 -14.96263 -14.73770 -14.37691 -14.26173 -14.06969 -14.00670 -13.86597 -13.59970 -13.35223 -13.19628 -13.13204 -12.72555 -12.62612 -12.39686 -12.33550 -11.93767 -11.55183 -11.30403 -11.15468 -11.08444 -10.67497 -10.16061 -9.91360 -9.75613 -8.73948 -8.53355 -6.25135 -0.28053 0.39369 0.55535 1.10631 1.32677 1.37460 1.45872 1.52467 1.80777 2.26397 2.34360 2.43591 2.80576 3.00877 3.15453 3.17471 3.67890 3.74047 3.81572 3.93272 4.05289 4.21940 4.27636 4.33833 4.44403 4.50288 4.54944 4.63536 4.67672 4.73175 4.84156 5.00080 5.12045 5.15726 5.20822 5.27078 5.27544 5.35402 5.39949 5.58893 5.70909 5.80453 5.83859 6.14815 6.53450 6.69150 6.79775 7.22598 7.51025 8.57424 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.025080 B = 0.001757 C = 0.001690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.152749 B =15928.529151 C =16568.130304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.014 4.014 3 O -0.209 6.209 4 C 0.182 3.818 5 N -0.515 5.515 6 C -0.059 4.059 7 C 0.210 3.790 8 N -0.710 5.710 9 C 0.553 3.447 10 O -0.591 6.591 11 C -0.239 4.239 12 C 0.013 3.987 13 C -0.160 4.160 14 C -0.040 4.040 15 C -0.194 4.194 16 C 0.136 3.864 17 O -0.233 6.233 18 C -0.404 4.404 19 H 0.084 0.916 20 C 0.012 3.988 21 N -0.917 5.917 22 Si 0.971 3.029 23 H -0.264 1.264 24 H -0.268 1.268 25 H -0.260 1.260 26 C -0.243 4.243 27 C -0.045 4.045 28 H 0.100 0.900 29 H 0.094 0.906 30 H 0.100 0.900 31 H 0.292 0.708 32 H 0.065 0.935 33 H 0.093 0.907 34 H 0.413 0.587 35 H 0.155 0.845 36 H 0.124 0.876 37 H 0.166 0.834 38 H 0.138 0.862 39 H 0.286 0.714 40 H 0.114 0.886 41 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.551 26.363 -19.034 32.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.068 4.068 3 O -0.096 6.096 4 C -0.045 4.045 5 N -0.243 5.243 6 C -0.178 4.178 7 C 0.086 3.914 8 N -0.361 5.361 9 C 0.345 3.655 10 O -0.474 6.474 11 C -0.259 4.259 12 C -0.006 4.006 13 C -0.161 4.161 14 C -0.057 4.057 15 C -0.213 4.213 16 C 0.086 3.914 17 O -0.140 6.140 18 C -0.480 4.480 19 H 0.102 0.898 20 C -0.188 4.188 21 N -0.556 5.556 22 Si 0.793 3.207 23 H -0.189 1.189 24 H -0.193 1.193 25 H -0.184 1.184 26 C -0.263 4.263 27 C -0.063 4.063 28 H 0.118 0.882 29 H 0.113 0.887 30 H 0.119 0.881 31 H 0.307 0.693 32 H 0.083 0.917 33 H 0.111 0.889 34 H 0.249 0.751 35 H 0.172 0.828 36 H 0.142 0.858 37 H 0.183 0.817 38 H 0.156 0.844 39 H 0.096 0.904 40 H 0.131 0.869 41 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 5.898 25.449 -19.342 32.505 hybrid contribution -0.305 0.052 0.910 0.961 sum 5.594 25.501 -18.432 31.958 Atomic orbital electron populations 1.20547 0.81718 1.05636 1.05284 1.23786 0.96150 0.83629 1.03276 1.84503 1.18965 1.36402 1.69680 1.29008 0.86259 0.90667 0.98528 1.70339 1.23152 1.12025 1.18756 1.21295 0.88810 0.96556 1.11105 1.19270 1.01308 0.87001 0.83829 1.45736 1.68888 1.12823 1.08686 1.18514 0.75861 0.81356 0.89794 1.90796 1.52973 1.55839 1.47774 1.22736 1.10058 0.98137 0.94978 1.22178 0.89209 0.95336 0.93924 1.18815 1.09645 0.94606 0.93010 1.21352 0.94638 0.99964 0.89789 1.20493 1.09229 0.92914 0.98691 1.19942 0.93650 0.94059 0.83792 1.83464 1.73328 1.33322 1.23856 1.20758 1.42166 0.89221 0.95808 0.89832 1.25333 0.95197 0.97415 1.00809 1.69700 1.42885 1.18097 1.24958 0.85206 0.79773 0.78496 0.77202 1.18923 1.19313 1.18408 1.21228 1.10623 1.00980 0.93436 1.21297 0.94293 0.95396 0.95329 0.88187 0.88674 0.88141 0.69276 0.91716 0.88932 0.75137 0.82806 0.85803 0.81705 0.84372 0.90391 0.86867 0.84276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.46 10.22 71.24 0.73 0.27 16 2 C -0.01 -0.17 7.39 24.79 0.18 0.02 16 3 O -0.21 -2.50 10.78 -3.75 -0.04 -2.54 16 4 C 0.18 1.83 13.23 130.48 1.73 3.56 16 5 N -0.51 -8.85 11.29 -304.06 -3.43 -12.29 16 6 C -0.06 -0.95 6.48 41.26 0.27 -0.68 16 7 C 0.21 3.68 6.01 85.63 0.51 4.19 16 8 N -0.71 -12.36 5.54 -471.25 -2.61 -14.97 16 9 C 0.55 12.97 7.74 86.33 0.67 13.64 16 10 O -0.59 -18.55 16.23 -4.42 -0.07 -18.62 16 11 C -0.24 -5.03 9.41 23.62 0.22 -4.81 16 12 C 0.01 0.34 9.45 23.82 0.23 0.57 16 13 C -0.16 -4.70 5.87 -20.13 -0.12 -4.82 16 14 C -0.04 -1.10 9.40 22.55 0.21 -0.89 16 15 C -0.19 -6.78 9.97 22.34 0.22 -6.56 16 16 C 0.14 6.04 6.66 22.72 0.15 6.19 16 17 O -0.23 -12.14 8.57 -20.39 -0.17 -12.32 16 18 C -0.40 -23.04 9.94 67.94 0.68 -22.37 16 19 H 0.08 5.01 5.41 -2.91 -0.02 4.99 16 20 C 0.01 0.67 5.49 84.86 0.47 1.14 16 21 N -0.92 -53.48 13.96 21.62 0.30 -53.17 16 22 Si 0.97 43.80 28.62 68.60 1.96 45.76 16 23 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 24 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 25 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 26 C -0.24 -10.30 9.14 22.34 0.20 -10.10 16 27 C -0.05 -1.53 9.78 22.55 0.22 -1.31 16 28 H 0.10 0.44 8.14 -2.39 -0.02 0.42 16 29 H 0.09 0.35 8.14 -2.39 -0.02 0.33 16 30 H 0.10 0.52 7.16 -2.39 -0.02 0.51 16 31 H 0.29 -0.19 8.06 -2.91 -0.02 -0.21 16 32 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.09 1.44 7.16 -2.38 -0.02 1.43 16 34 H 0.41 5.39 8.44 -92.71 -0.78 4.61 16 35 H 0.15 2.30 6.07 -2.91 -0.02 2.29 16 36 H 0.12 3.26 7.52 -2.91 -0.02 3.24 16 37 H 0.17 3.08 6.16 -2.91 -0.02 3.06 16 38 H 0.14 4.30 8.06 -2.91 -0.02 4.28 16 39 H 0.29 15.29 8.31 -92.71 -0.77 14.52 16 40 H 0.11 5.28 5.62 -2.91 -0.02 5.27 16 41 H 0.14 4.01 8.06 -2.91 -0.02 3.98 16 Total: -1.00 -75.14 362.94 2.82 -72.32 By element: Atomic # 1 Polarization: 17.47 SS G_CDS: 0.32 Total: 17.78 kcal Atomic # 6 Polarization: -28.52 SS G_CDS: 6.57 Total: -21.95 kcal Atomic # 7 Polarization: -74.69 SS G_CDS: -5.74 Total: -80.44 kcal Atomic # 8 Polarization: -33.19 SS G_CDS: -0.29 Total: -33.48 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 1.96 Total: 45.76 kcal Total: -75.14 2.82 -72.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492280859.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.882 kcal (2) G-P(sol) polarization free energy of solvation -75.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds