Wall clock time and date at job start Tue Mar 31 2020 16:03:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.46839 * 2 1 4 4 N 1.46498 * 109.47548 * 119.99863 * 2 1 3 5 5 C 1.34777 * 120.00261 * 275.00945 * 4 2 1 6 6 O 1.21724 * 119.99996 * 359.97438 * 5 4 2 7 7 C 1.46257 * 119.99976 * 179.97438 * 5 4 2 8 8 C 1.35022 * 119.99813 * 173.20588 * 7 5 4 9 9 C 1.46959 * 120.00047 * 348.68276 * 8 7 5 10 10 C 1.40029 * 120.10249 * 316.40910 * 9 8 7 11 11 C 1.37600 * 119.89565 * 179.69884 * 10 9 8 12 12 C 1.39179 * 120.09948 * 0.59212 * 11 10 9 13 13 O 1.35571 * 119.89655 * 179.69512 * 12 11 10 14 14 C 1.34784 * 117.00140 * 174.33655 * 13 12 11 15 15 H 1.07995 * 119.99824 * 5.07042 * 14 13 12 16 16 C 1.38715 * 119.99983 * 185.06294 * 14 13 12 17 17 N 1.31513 * 120.00148 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99751 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47257 * 90.00482 * 18 16 14 20 20 H 1.48508 * 109.46908 * 210.00304 * 18 16 14 21 21 H 1.48504 * 109.47269 * 329.99707 * 18 16 14 22 22 C 1.39167 * 120.20562 * 359.68355 * 12 11 10 23 23 C 1.37598 * 120.10429 * 0.02562 * 22 12 11 24 24 C 1.50704 * 109.47060 * 240.00504 * 2 1 3 25 25 C 1.41376 * 126.80236 * 84.99987 * 24 2 1 26 26 C 1.35455 * 103.98451 * 180.20211 * 25 24 2 27 27 O 1.34044 * 106.44057 * 359.64913 * 26 25 24 28 28 N 1.20914 * 111.57221 * 0.37761 * 27 26 25 29 29 H 1.09001 * 109.46839 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47283 * 299.99311 * 1 2 3 31 31 H 1.09000 * 109.47411 * 60.00011 * 1 2 3 32 32 H 0.97001 * 119.99704 * 94.99947 * 4 2 1 33 33 H 1.07999 * 120.00098 * 353.20973 * 7 5 4 34 34 H 1.08001 * 120.00121 * 168.68337 * 8 7 5 35 35 H 1.08000 * 120.04964 * 359.97438 * 10 9 8 36 36 H 1.07991 * 119.94874 * 180.27287 * 11 10 9 37 37 H 0.96995 * 119.99837 * 179.97438 * 17 16 14 38 38 H 1.08007 * 119.95031 * 180.02562 * 22 12 11 39 39 H 1.08003 * 120.05681 * 180.02562 * 23 22 12 40 40 H 1.08000 * 128.00977 * 359.93653 * 25 24 2 41 41 H 1.07998 * 126.77515 * 179.73852 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1470 -0.0183 2.3572 6 8 1.8578 1.1628 2.4118 7 6 2.6341 -0.7079 3.5514 8 6 2.8936 -0.0079 4.6765 9 6 2.9287 1.4607 4.6366 10 6 3.5796 2.1194 3.5862 11 6 3.6045 3.4947 3.5498 12 6 2.9947 4.2309 4.5612 13 8 3.0271 5.5857 4.5245 14 6 2.3200 6.2405 5.4667 15 1 1.8287 5.6883 6.2542 16 6 2.2234 7.6237 5.4251 17 7 2.8213 8.2961 4.4660 18 14 1.2440 8.5312 6.7315 19 1 2.1353 8.8759 7.8681 20 1 0.6784 9.7756 6.1508 21 1 0.1394 7.6637 7.2139 22 6 2.3515 3.5806 5.6102 23 6 2.3163 2.2057 5.6519 24 6 2.0323 -0.7103 -1.2306 25 6 2.2216 -0.1493 -2.5143 26 6 2.6766 -1.1845 -3.2601 27 8 2.7416 -2.2430 -2.4403 28 7 2.3784 -1.9619 -1.3217 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 2.2491 -1.6317 1.1525 33 1 2.7863 -1.7769 3.5334 34 1 3.0753 -0.5273 5.6058 35 1 4.0575 1.5488 2.8036 36 1 4.1025 4.0035 2.7378 37 1 2.7534 9.2632 4.4368 38 1 1.8792 4.1560 6.3927 39 1 1.8166 1.7018 6.4661 40 1 2.0407 0.8680 -2.8288 41 1 2.9370 -1.1611 -4.3080 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492281324.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:03:36 Heat of formation + Delta-G solvation = 57.577677 kcal Electronic energy + Delta-G solvation = -26520.486561 eV Core-core repulsion = 22563.889928 eV Total energy + Delta-G solvation = -3956.596632 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -45.26577 -39.86214 -38.75725 -36.90185 -35.92211 -33.49012 -33.04350 -32.14060 -31.85583 -30.46917 -30.10748 -27.92279 -25.48887 -24.91194 -23.37927 -23.13950 -21.79811 -21.22178 -20.39705 -19.47641 -18.15760 -17.88739 -17.83091 -17.12057 -16.65904 -16.21656 -15.06184 -14.81502 -14.60451 -14.49814 -14.18363 -13.95381 -13.73096 -13.62199 -13.47364 -13.25013 -13.02071 -12.88039 -12.49602 -12.28574 -12.15891 -11.83571 -11.68504 -11.52502 -11.34231 -11.00041 -10.67589 -10.61236 -10.44042 -10.40488 -9.98611 -9.50841 -9.41592 -9.15490 -9.05158 -8.68980 -7.91373 -6.85516 -6.45223 -4.00936 1.17614 1.25037 1.88446 2.43371 2.70915 2.93100 3.14015 3.15357 3.19693 3.19870 3.60814 3.76239 3.97714 4.36318 4.70619 4.79984 4.91854 5.04678 5.07027 5.10466 5.15628 5.25406 5.25982 5.36450 5.50182 5.61219 5.65708 5.74690 5.78711 5.85924 6.03814 6.26054 6.33965 6.43079 6.49708 6.60939 6.79967 7.04618 7.13344 7.37323 7.46185 7.51299 7.65410 7.92417 7.93335 8.01653 8.51584 9.00567 9.72605 10.72696 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.017134 B = 0.002541 C = 0.002342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1633.824925 B =11016.821333 C =11954.872608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.225 3.775 3 H 0.111 0.889 4 N -0.731 5.731 5 C 0.543 3.457 6 O -0.510 6.510 7 C -0.267 4.267 8 C 0.029 3.971 9 C -0.189 4.189 10 C 0.012 3.988 11 C -0.203 4.203 12 C 0.172 3.828 13 O -0.173 6.173 14 C -0.390 4.390 15 H 0.094 0.906 16 C 0.039 3.961 17 N -0.860 5.860 18 Si 0.942 3.058 19 H -0.273 1.273 20 H -0.277 1.277 21 H -0.267 1.267 22 C -0.250 4.250 23 C -0.041 4.041 24 C 0.013 3.987 25 C -0.224 4.224 26 C -0.058 4.058 27 O 0.099 5.901 28 N -0.361 5.361 29 H 0.056 0.944 30 H 0.076 0.924 31 H 0.067 0.933 32 H 0.401 0.599 33 H 0.121 0.879 34 H 0.122 0.878 35 H 0.100 0.900 36 H 0.113 0.887 37 H 0.270 0.730 38 H 0.126 0.874 39 H 0.106 0.894 40 H 0.175 0.825 41 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.436 -19.784 -11.358 22.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.118 3.882 3 H 0.129 0.871 4 N -0.384 5.384 5 C 0.333 3.667 6 O -0.386 6.386 7 C -0.288 4.288 8 C 0.009 3.991 9 C -0.190 4.190 10 C -0.006 4.006 11 C -0.222 4.222 12 C 0.117 3.883 13 O -0.075 6.075 14 C -0.466 4.466 15 H 0.111 0.889 16 C -0.166 4.166 17 N -0.495 5.495 18 Si 0.766 3.234 19 H -0.198 1.198 20 H -0.202 1.202 21 H -0.191 1.191 22 C -0.270 4.270 23 C -0.059 4.059 24 C -0.146 4.146 25 C -0.245 4.245 26 C -0.139 4.139 27 O 0.033 5.967 28 N -0.065 5.065 29 H 0.076 0.924 30 H 0.095 0.905 31 H 0.086 0.914 32 H 0.235 0.765 33 H 0.139 0.861 34 H 0.140 0.860 35 H 0.118 0.882 36 H 0.131 0.869 37 H 0.080 0.920 38 H 0.143 0.857 39 H 0.124 0.876 40 H 0.193 0.807 41 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -1.470 -19.501 -10.671 22.278 hybrid contribution -0.562 0.673 -0.020 0.877 sum -2.032 -18.828 -10.691 21.746 Atomic orbital electron populations 1.22150 0.93543 1.02424 1.03461 1.19129 0.94247 0.96146 0.78631 0.87133 1.45993 1.69143 1.14232 1.09081 1.18506 0.78274 0.86862 0.83075 1.90999 1.48935 1.14680 1.83993 1.22565 1.11971 0.99581 0.94658 1.22337 0.87091 0.93517 0.96116 1.18294 1.09997 0.91229 0.99514 1.20438 0.94068 0.92778 0.93351 1.19995 1.08944 0.93028 1.00223 1.19520 0.91708 0.84575 0.92524 1.83906 1.60917 1.12714 1.49997 1.21394 1.29898 0.89573 1.05704 0.88892 1.25322 0.97501 0.95613 0.98126 1.70024 1.40463 1.08018 1.30982 0.85702 0.79328 0.78956 0.79403 1.19839 1.20231 1.19133 1.20950 1.09574 0.94377 1.02072 1.20745 0.96108 0.93308 0.95779 1.23813 1.02319 0.90816 0.97683 1.22740 1.06987 1.02415 0.92393 1.26048 1.02546 0.86109 0.99190 1.84828 1.62284 1.35374 1.14249 1.73736 1.15954 1.16798 1.00029 0.92449 0.90521 0.91393 0.76455 0.86123 0.86013 0.88163 0.86875 0.91970 0.85655 0.87601 0.80730 0.76535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.70 9.47 37.16 0.35 -1.35 16 2 C 0.22 2.63 3.08 -69.08 -0.21 2.42 16 3 H 0.11 1.46 7.58 -51.93 -0.39 1.06 16 4 N -0.73 -9.03 5.06 -56.38 -0.29 -9.31 16 5 C 0.54 8.20 6.74 -13.04 -0.09 8.11 16 6 O -0.51 -9.78 11.84 5.17 0.06 -9.72 16 7 C -0.27 -3.51 9.90 -37.50 -0.37 -3.88 16 8 C 0.03 0.42 9.80 -37.19 -0.36 0.05 16 9 C -0.19 -3.53 4.54 -105.02 -0.48 -4.00 16 10 C 0.01 0.25 6.59 -39.14 -0.26 -0.01 16 11 C -0.20 -4.66 9.97 -39.47 -0.39 -5.05 16 12 C 0.17 4.37 6.66 -38.89 -0.26 4.11 16 13 O -0.17 -5.09 9.74 0.73 0.01 -5.08 16 14 C -0.39 -11.12 9.48 30.91 0.29 -10.83 16 15 H 0.09 2.46 5.18 -52.49 -0.27 2.19 16 16 C 0.04 1.09 5.49 -17.51 -0.10 0.99 16 17 N -0.86 -25.53 13.67 55.48 0.76 -24.77 16 18 Si 0.94 20.77 29.55 -169.99 -5.02 15.74 16 19 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 20 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 21 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 22 C -0.25 -5.73 9.14 -39.47 -0.36 -6.09 16 23 C -0.04 -0.80 9.78 -39.14 -0.38 -1.18 16 24 C 0.01 0.14 6.27 -82.10 -0.52 -0.38 16 25 C -0.22 -1.75 11.12 -39.38 -0.44 -2.18 16 26 C -0.06 -0.35 12.30 29.74 0.37 0.02 16 27 O 0.10 0.89 11.20 17.17 0.19 1.08 16 28 N -0.36 -3.91 11.37 33.42 0.38 -3.53 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 31 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.40 4.35 8.03 -40.82 -0.33 4.02 16 33 H 0.12 1.20 8.06 -52.49 -0.42 0.77 16 34 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 35 H 0.10 1.85 7.02 -52.49 -0.37 1.49 16 36 H 0.11 2.54 8.06 -52.49 -0.42 2.11 16 37 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 38 H 0.13 2.84 5.62 -52.48 -0.29 2.54 16 39 H 0.11 1.73 8.06 -52.48 -0.42 1.31 16 40 H 0.18 1.02 8.06 -52.49 -0.42 0.59 16 41 H 0.22 0.32 8.06 -52.49 -0.42 -0.10 16 LS Contribution 358.63 15.07 5.40 5.40 Total: -1.00 -34.58 358.63 -6.31 -40.89 By element: Atomic # 1 Polarization: 13.15 SS G_CDS: -4.60 Total: 8.55 kcal Atomic # 6 Polarization: -16.06 SS G_CDS: -3.21 Total: -19.27 kcal Atomic # 7 Polarization: -38.46 SS G_CDS: 0.85 Total: -37.61 kcal Atomic # 8 Polarization: -13.98 SS G_CDS: 0.26 Total: -13.72 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -34.58 -6.31 -40.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492281324.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.470 kcal (2) G-P(sol) polarization free energy of solvation -34.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.892 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds