Wall clock time and date at job start Tue Mar 31 2020 16:03:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.46839 * 2 1 4 4 N 1.46498 * 109.47548 * 119.99863 * 2 1 3 5 5 C 1.34777 * 120.00261 * 275.00945 * 4 2 1 6 6 O 1.21724 * 119.99996 * 359.97438 * 5 4 2 7 7 C 1.46257 * 119.99976 * 179.97438 * 5 4 2 8 8 C 1.35022 * 119.99813 * 173.20588 * 7 5 4 9 9 C 1.46959 * 120.00047 * 348.68276 * 8 7 5 10 10 C 1.40029 * 120.10249 * 316.40910 * 9 8 7 11 11 C 1.37600 * 119.89565 * 179.69884 * 10 9 8 12 12 C 1.39179 * 120.09948 * 0.59212 * 11 10 9 13 13 O 1.35571 * 119.89655 * 179.69512 * 12 11 10 14 14 C 1.34784 * 117.00140 * 174.33655 * 13 12 11 15 15 H 1.07995 * 119.99824 * 5.07042 * 14 13 12 16 16 C 1.38715 * 119.99983 * 185.06294 * 14 13 12 17 17 N 1.31513 * 120.00148 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99751 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47257 * 90.00482 * 18 16 14 20 20 H 1.48508 * 109.46908 * 210.00304 * 18 16 14 21 21 H 1.48504 * 109.47269 * 329.99707 * 18 16 14 22 22 C 1.39167 * 120.20562 * 359.68355 * 12 11 10 23 23 C 1.37598 * 120.10429 * 0.02562 * 22 12 11 24 24 C 1.50704 * 109.47060 * 240.00504 * 2 1 3 25 25 C 1.41376 * 126.80236 * 84.99987 * 24 2 1 26 26 C 1.35455 * 103.98451 * 180.20211 * 25 24 2 27 27 O 1.34044 * 106.44057 * 359.64913 * 26 25 24 28 28 N 1.20914 * 111.57221 * 0.37761 * 27 26 25 29 29 H 1.09001 * 109.46839 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47283 * 299.99311 * 1 2 3 31 31 H 1.09000 * 109.47411 * 60.00011 * 1 2 3 32 32 H 0.97001 * 119.99704 * 94.99947 * 4 2 1 33 33 H 1.07999 * 120.00098 * 353.20973 * 7 5 4 34 34 H 1.08001 * 120.00121 * 168.68337 * 8 7 5 35 35 H 1.08000 * 120.04964 * 359.97438 * 10 9 8 36 36 H 1.07991 * 119.94874 * 180.27287 * 11 10 9 37 37 H 0.96995 * 119.99837 * 179.97438 * 17 16 14 38 38 H 1.08007 * 119.95031 * 180.02562 * 22 12 11 39 39 H 1.08003 * 120.05681 * 180.02562 * 23 22 12 40 40 H 1.08000 * 128.00977 * 359.93653 * 25 24 2 41 41 H 1.07998 * 126.77515 * 179.73852 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1470 -0.0183 2.3572 6 8 1.8578 1.1628 2.4118 7 6 2.6341 -0.7079 3.5514 8 6 2.8936 -0.0079 4.6765 9 6 2.9287 1.4607 4.6366 10 6 3.5796 2.1194 3.5862 11 6 3.6045 3.4947 3.5498 12 6 2.9947 4.2309 4.5612 13 8 3.0271 5.5857 4.5245 14 6 2.3200 6.2405 5.4667 15 1 1.8287 5.6883 6.2542 16 6 2.2234 7.6237 5.4251 17 7 2.8213 8.2961 4.4660 18 14 1.2440 8.5312 6.7315 19 1 2.1353 8.8759 7.8681 20 1 0.6784 9.7756 6.1508 21 1 0.1394 7.6637 7.2139 22 6 2.3515 3.5806 5.6102 23 6 2.3163 2.2057 5.6519 24 6 2.0323 -0.7103 -1.2306 25 6 2.2216 -0.1493 -2.5143 26 6 2.6766 -1.1845 -3.2601 27 8 2.7416 -2.2430 -2.4403 28 7 2.3784 -1.9619 -1.3217 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 2.2491 -1.6317 1.1525 33 1 2.7863 -1.7769 3.5334 34 1 3.0753 -0.5273 5.6058 35 1 4.0575 1.5488 2.8036 36 1 4.1025 4.0035 2.7378 37 1 2.7534 9.2632 4.4368 38 1 1.8792 4.1560 6.3927 39 1 1.8166 1.7018 6.4661 40 1 2.0407 0.8680 -2.8288 41 1 2.9370 -1.1611 -4.3080 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492281324.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:03:32 Heat of formation + Delta-G solvation = 33.932574 kcal Electronic energy + Delta-G solvation = -26521.511889 eV Core-core repulsion = 22563.889928 eV Total energy + Delta-G solvation = -3957.621961 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 4.25 seconds Orbital eigenvalues (eV) -45.95266 -41.19734 -40.46628 -38.40956 -37.16322 -34.60788 -34.36853 -33.92150 -32.54755 -31.82797 -31.48966 -29.47473 -27.43613 -25.93169 -24.39975 -24.02371 -23.50129 -22.61488 -21.33679 -20.71321 -19.80518 -19.08911 -18.63831 -18.52597 -18.03647 -17.23125 -16.39325 -16.38340 -16.11488 -15.92426 -15.51825 -15.33139 -15.09895 -14.91994 -14.59938 -14.45577 -14.26569 -14.16767 -13.83318 -13.75618 -13.56623 -13.20178 -13.00459 -12.66499 -12.61291 -12.36855 -12.34404 -12.24166 -12.12232 -11.24480 -11.18175 -10.97818 -10.71856 -10.58733 -10.41818 -10.16226 -9.58786 -8.56978 -8.48465 -6.15671 -0.04001 0.58587 0.71135 1.10428 1.20424 1.33729 1.45383 1.52191 2.17107 2.18865 2.38922 2.44390 2.86845 2.98777 3.20403 3.51922 3.69620 3.91513 4.01287 4.08835 4.14167 4.15924 4.17209 4.29923 4.40211 4.54136 4.57436 4.61055 4.72924 4.76047 4.85700 5.04699 5.06052 5.08772 5.12621 5.23649 5.25112 5.41273 5.44941 5.66889 5.72130 5.83151 6.02436 6.23950 6.58752 6.95493 7.25196 7.36927 7.77355 8.74726 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.017134 B = 0.002541 C = 0.002342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1633.824925 B =11016.821333 C =11954.872608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.223 3.777 3 H 0.089 0.911 4 N -0.716 5.716 5 C 0.532 3.468 6 O -0.559 6.559 7 C -0.236 4.236 8 C 0.012 3.988 9 C -0.162 4.162 10 C 0.014 3.986 11 C -0.220 4.220 12 C 0.129 3.871 13 O -0.230 6.230 14 C -0.415 4.415 15 H 0.103 0.897 16 C -0.024 4.024 17 N -0.921 5.921 18 Si 1.021 2.979 19 H -0.260 1.260 20 H -0.270 1.270 21 H -0.253 1.253 22 C -0.258 4.258 23 C -0.046 4.046 24 C -0.005 4.005 25 C -0.242 4.242 26 C -0.033 4.033 27 O 0.095 5.905 28 N -0.383 5.383 29 H 0.064 0.936 30 H 0.052 0.948 31 H 0.082 0.918 32 H 0.412 0.588 33 H 0.168 0.832 34 H 0.170 0.830 35 H 0.116 0.884 36 H 0.101 0.899 37 H 0.273 0.727 38 H 0.121 0.879 39 H 0.148 0.852 40 H 0.189 0.811 41 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.068 -23.980 -11.345 26.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.117 3.883 3 H 0.107 0.893 4 N -0.369 5.369 5 C 0.323 3.677 6 O -0.439 6.439 7 C -0.257 4.257 8 C -0.007 4.007 9 C -0.163 4.163 10 C -0.004 4.004 11 C -0.239 4.239 12 C 0.078 3.922 13 O -0.136 6.136 14 C -0.491 4.491 15 H 0.120 0.880 16 C -0.221 4.221 17 N -0.559 5.559 18 Si 0.840 3.160 19 H -0.185 1.185 20 H -0.195 1.195 21 H -0.177 1.177 22 C -0.278 4.278 23 C -0.064 4.064 24 C -0.163 4.163 25 C -0.264 4.264 26 C -0.113 4.113 27 O 0.028 5.972 28 N -0.087 5.087 29 H 0.083 0.917 30 H 0.071 0.929 31 H 0.101 0.899 32 H 0.248 0.752 33 H 0.186 0.814 34 H 0.188 0.812 35 H 0.134 0.866 36 H 0.120 0.880 37 H 0.083 0.917 38 H 0.138 0.862 39 H 0.166 0.834 40 H 0.207 0.793 41 H 0.281 0.719 Dipole moment (debyes) X Y Z Total from point charges -2.095 -23.808 -10.676 26.176 hybrid contribution -0.328 1.435 -0.299 1.502 sum -2.423 -22.372 -10.975 25.037 Atomic orbital electron populations 1.22057 0.92969 1.02680 1.03047 1.19057 0.94708 0.95306 0.79201 0.89314 1.45913 1.67695 1.14599 1.08675 1.19066 0.77844 0.86468 0.84354 1.91005 1.51116 1.16855 1.84887 1.23002 1.08456 1.01723 0.92511 1.22584 0.88936 0.90596 0.98627 1.18851 1.06012 0.94196 0.97202 1.20643 0.94014 0.91465 0.94286 1.20161 1.09383 0.94526 0.99837 1.19993 0.93836 0.83932 0.94452 1.83875 1.63505 1.14600 1.51650 1.21887 1.30598 0.90426 1.06212 0.88009 1.26665 0.98548 0.96131 1.00756 1.70175 1.43360 1.08405 1.33936 0.84559 0.77871 0.77395 0.76176 1.18479 1.19470 1.17710 1.21092 1.09320 0.96109 1.01236 1.21178 0.95923 0.91919 0.97340 1.23730 1.03349 0.91259 0.97980 1.23037 1.07923 1.03770 0.91665 1.26871 0.99823 0.84306 1.00340 1.84786 1.61964 1.36293 1.14118 1.73722 1.16914 1.16883 1.01185 0.91706 0.92853 0.89913 0.75195 0.81433 0.81233 0.86584 0.88044 0.91748 0.86164 0.83394 0.79335 0.71928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.15 9.47 71.98 0.68 -2.47 16 2 C 0.22 5.11 3.08 44.25 0.14 5.24 16 3 H 0.09 2.43 7.58 -2.39 -0.02 2.41 16 4 N -0.72 -16.34 5.06 -450.48 -2.28 -18.62 16 5 C 0.53 14.90 6.74 86.33 0.58 15.48 16 6 O -0.56 -21.23 11.84 -4.42 -0.05 -21.28 16 7 C -0.24 -5.07 9.90 23.62 0.23 -4.84 16 8 C 0.01 0.28 9.80 23.82 0.23 0.51 16 9 C -0.16 -5.67 4.54 -20.12 -0.09 -5.76 16 10 C 0.01 0.57 6.59 22.55 0.15 0.72 16 11 C -0.22 -10.74 9.97 22.34 0.22 -10.51 16 12 C 0.13 7.01 6.66 22.72 0.15 7.16 16 13 O -0.23 -14.72 9.74 -20.30 -0.20 -14.92 16 14 C -0.42 -25.31 9.48 67.93 0.64 -24.66 16 15 H 0.10 5.70 5.18 -2.91 -0.02 5.69 16 16 C -0.02 -1.39 5.49 84.85 0.47 -0.92 16 17 N -0.92 -58.31 13.67 21.62 0.30 -58.01 16 18 Si 1.02 44.15 29.55 68.60 2.03 46.18 16 19 H -0.26 -10.57 7.11 99.48 0.71 -9.87 16 20 H -0.27 -11.18 7.11 99.48 0.71 -10.48 16 21 H -0.25 -10.22 7.11 99.48 0.71 -9.52 16 22 C -0.26 -12.18 9.14 22.34 0.20 -11.98 16 23 C -0.05 -1.71 9.78 22.55 0.22 -1.49 16 24 C 0.00 -0.09 6.27 43.58 0.27 0.18 16 25 C -0.24 -3.31 11.12 22.40 0.25 -3.06 16 26 C -0.03 -0.29 12.30 67.18 0.83 0.54 16 27 O 0.09 1.45 11.20 71.60 0.80 2.26 16 28 N -0.38 -7.52 11.37 -49.58 -0.56 -8.08 16 29 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.41 7.76 8.03 -92.71 -0.74 7.02 16 33 H 0.17 2.15 8.06 -2.91 -0.02 2.12 16 34 H 0.17 2.57 8.06 -2.91 -0.02 2.55 16 35 H 0.12 4.22 7.02 -2.91 -0.02 4.20 16 36 H 0.10 5.00 8.06 -2.92 -0.02 4.97 16 37 H 0.27 15.77 8.31 -92.71 -0.77 15.00 16 38 H 0.12 5.66 5.62 -2.91 -0.02 5.65 16 39 H 0.15 4.26 8.06 -2.91 -0.02 4.24 16 40 H 0.19 1.89 8.06 -2.91 -0.02 1.87 16 41 H 0.27 -0.48 8.06 -2.91 -0.02 -0.51 16 Total: -1.00 -84.48 358.63 5.55 -78.93 By element: Atomic # 1 Polarization: 29.06 SS G_CDS: 0.34 Total: 29.39 kcal Atomic # 6 Polarization: -41.03 SS G_CDS: 5.18 Total: -35.84 kcal Atomic # 7 Polarization: -82.16 SS G_CDS: -2.55 Total: -84.71 kcal Atomic # 8 Polarization: -34.50 SS G_CDS: 0.55 Total: -33.95 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.18 kcal Total: -84.48 5.55 -78.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492281324.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.865 kcal (2) G-P(sol) polarization free energy of solvation -84.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.932 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.25 seconds