Wall clock time and date at job start Tue Mar 31 2020 16:03:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09008 * 109.46909 * 2 1 4 4 N 1.46506 * 109.47491 * 240.00443 * 2 1 3 5 5 C 1.34773 * 119.99966 * 84.99638 * 4 2 1 6 6 O 1.21723 * 120.00473 * 0.27509 * 5 4 2 7 7 C 1.46255 * 119.99533 * 180.02562 * 5 4 2 8 8 C 1.35025 * 119.99739 * 173.48802 * 7 5 4 9 9 C 1.46964 * 120.00105 * 348.68807 * 8 7 5 10 10 C 1.40029 * 120.09855 * 316.30936 * 9 8 7 11 11 C 1.37599 * 119.89619 * 179.74263 * 10 9 8 12 12 C 1.39176 * 120.10170 * 0.56089 * 11 10 9 13 13 O 1.35567 * 119.90063 * 179.71701 * 12 11 10 14 14 C 1.34786 * 116.99979 * 174.31678 * 13 12 11 15 15 H 1.07993 * 120.00094 * 5.06177 * 14 13 12 16 16 C 1.38713 * 119.99547 * 185.06196 * 14 13 12 17 17 N 1.31506 * 120.00461 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 119.99752 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.47266 * 90.00345 * 18 16 14 20 20 H 1.48502 * 109.47358 * 210.00472 * 18 16 14 21 21 H 1.48502 * 109.47152 * 329.99947 * 18 16 14 22 22 C 1.39181 * 120.20156 * 359.69780 * 12 11 10 23 23 C 1.37600 * 120.10296 * 0.02562 * 22 12 11 24 24 C 1.50698 * 109.47607 * 119.99972 * 2 1 3 25 25 C 1.41383 * 126.80211 * 275.01015 * 24 2 1 26 26 C 1.35450 * 103.98438 * 179.97438 * 25 24 2 27 27 O 1.34045 * 106.44854 * 359.97438 * 26 25 24 28 28 N 1.20924 * 111.56188 * 359.71500 * 27 26 25 29 29 H 1.08992 * 109.47343 * 299.99663 * 1 2 3 30 30 H 1.09002 * 109.47136 * 60.00506 * 1 2 3 31 31 H 1.09008 * 109.46500 * 179.97438 * 1 2 3 32 32 H 0.96997 * 119.99592 * 265.00091 * 4 2 1 33 33 H 1.07994 * 120.00365 * 353.48746 * 7 5 4 34 34 H 1.07997 * 119.99830 * 168.68637 * 8 7 5 35 35 H 1.08005 * 120.04734 * 0.02837 * 10 9 8 36 36 H 1.08001 * 119.94452 * 180.25528 * 11 10 9 37 37 H 0.97002 * 120.00402 * 180.02562 * 17 16 14 38 38 H 1.07999 * 119.94904 * 180.02562 * 22 12 11 39 39 H 1.07996 * 120.05324 * 180.02562 * 23 22 12 40 40 H 1.08001 * 128.00571 * 359.95614 * 25 24 2 41 41 H 1.08001 * 126.77665 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 7 2.0184 -0.6905 -1.1962 5 6 2.1471 -0.0181 -2.3571 6 8 1.8623 1.1641 -2.4106 7 6 2.6341 -0.7077 -3.5514 8 6 2.6391 -0.0724 -4.7429 9 6 1.9339 1.2078 -4.8960 10 6 0.6551 1.3747 -4.3506 11 6 0.0008 2.5769 -4.4919 12 6 0.6032 3.6222 -5.1857 13 8 -0.0475 4.8030 -5.3273 14 6 0.6342 5.8119 -5.9055 15 1 1.6219 5.6367 -6.3055 16 6 0.0670 7.0751 -5.9866 17 7 -1.1355 7.2887 -5.4990 18 14 1.0120 8.4735 -6.7872 19 1 0.7021 8.5130 -8.2390 20 1 0.6161 9.7607 -6.1614 21 1 2.4691 8.2586 -6.5977 22 6 1.8720 3.4591 -5.7342 23 6 2.5362 2.2624 -5.5930 24 6 2.0324 -0.7104 1.2304 25 6 2.2216 -0.1494 2.5143 26 6 2.6805 -1.1836 3.2590 27 8 2.7398 -2.2436 2.4406 28 7 2.3716 -1.9637 1.3234 29 1 -0.3633 0.5137 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3632 -1.0278 -0.0005 32 1 2.2491 -1.6317 -1.1527 33 1 2.9898 -1.7249 -3.4803 34 1 3.1614 -0.5052 -5.5833 35 1 0.1850 0.5626 -3.8158 36 1 -0.9839 2.7079 -4.0679 37 1 -1.5323 8.1720 -5.5561 38 1 2.3358 4.2731 -6.2714 39 1 3.5208 2.1368 -6.0186 40 1 2.0420 0.8681 2.8285 41 1 2.9463 -1.1590 4.3055 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492281325.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:03:38 Heat of formation + Delta-G solvation = 33.828630 kcal Electronic energy + Delta-G solvation = -26518.200298 eV Core-core repulsion = 22560.573830 eV Total energy + Delta-G solvation = -3957.626468 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 2.23 seconds Orbital eigenvalues (eV) -45.95078 -41.19686 -40.46290 -38.40265 -37.16403 -34.60715 -34.36715 -33.92090 -32.54644 -31.82202 -31.49727 -29.45952 -27.43831 -25.94067 -24.38428 -24.01943 -23.50360 -22.61223 -21.33697 -20.71263 -19.80732 -19.08149 -18.63537 -18.52624 -18.04313 -17.21944 -16.42432 -16.35619 -16.01546 -15.94864 -15.54740 -15.41166 -15.13685 -14.75522 -14.61278 -14.50422 -14.32645 -14.11847 -13.83265 -13.74898 -13.56382 -13.19923 -13.00310 -12.65942 -12.61121 -12.37173 -12.33607 -12.23860 -12.12233 -11.24201 -11.17669 -10.97747 -10.71390 -10.58739 -10.41452 -10.15866 -9.59322 -8.56648 -8.48336 -6.15568 -0.03740 0.58898 0.71659 1.10823 1.20224 1.33669 1.45349 1.52149 2.17158 2.19244 2.39141 2.44415 2.87011 2.99147 3.20744 3.52439 3.69709 3.91750 4.01388 4.09411 4.13540 4.16625 4.17540 4.29963 4.40220 4.54614 4.57536 4.61136 4.73121 4.76423 4.85858 5.04474 5.06925 5.08986 5.13474 5.24078 5.25335 5.41383 5.45212 5.67263 5.72451 5.83503 6.02578 6.24442 6.58823 6.95589 7.25512 7.37006 7.77580 8.74816 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.017595 B = 0.002495 C = 0.002311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.012252 B =11221.016678 C =12115.076949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.225 3.775 3 H 0.090 0.910 4 N -0.716 5.716 5 C 0.532 3.468 6 O -0.559 6.559 7 C -0.237 4.237 8 C 0.012 3.988 9 C -0.162 4.162 10 C 0.015 3.985 11 C -0.219 4.219 12 C 0.128 3.872 13 O -0.230 6.230 14 C -0.415 4.415 15 H 0.102 0.898 16 C -0.024 4.024 17 N -0.921 5.921 18 Si 1.021 2.979 19 H -0.260 1.260 20 H -0.270 1.270 21 H -0.253 1.253 22 C -0.259 4.259 23 C -0.046 4.046 24 C -0.005 4.005 25 C -0.241 4.241 26 C -0.033 4.033 27 O 0.095 5.905 28 N -0.383 5.383 29 H 0.082 0.918 30 H 0.052 0.948 31 H 0.063 0.937 32 H 0.412 0.588 33 H 0.168 0.832 34 H 0.170 0.830 35 H 0.118 0.882 36 H 0.102 0.898 37 H 0.273 0.727 38 H 0.120 0.880 39 H 0.148 0.852 40 H 0.190 0.810 41 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.831 -20.706 14.751 27.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.118 3.882 3 H 0.108 0.892 4 N -0.369 5.369 5 C 0.323 3.677 6 O -0.439 6.439 7 C -0.257 4.257 8 C -0.007 4.007 9 C -0.163 4.163 10 C -0.003 4.003 11 C -0.238 4.238 12 C 0.077 3.923 13 O -0.136 6.136 14 C -0.491 4.491 15 H 0.120 0.880 16 C -0.221 4.221 17 N -0.559 5.559 18 Si 0.840 3.160 19 H -0.185 1.185 20 H -0.195 1.195 21 H -0.177 1.177 22 C -0.278 4.278 23 C -0.064 4.064 24 C -0.163 4.163 25 C -0.263 4.263 26 C -0.114 4.114 27 O 0.028 5.972 28 N -0.087 5.087 29 H 0.101 0.899 30 H 0.071 0.929 31 H 0.083 0.917 32 H 0.248 0.752 33 H 0.185 0.815 34 H 0.187 0.813 35 H 0.136 0.864 36 H 0.120 0.880 37 H 0.082 0.918 38 H 0.138 0.862 39 H 0.165 0.835 40 H 0.207 0.793 41 H 0.281 0.719 Dipole moment (debyes) X Y Z Total from point charges 10.279 -20.667 13.950 26.970 hybrid contribution -0.214 1.467 0.313 1.515 sum 10.065 -19.200 14.263 25.950 Atomic orbital electron populations 1.22073 0.93155 1.02655 1.03063 1.19041 0.94521 0.95370 0.79220 0.89179 1.45912 1.67650 1.14424 1.08893 1.19064 0.77121 0.86843 0.84702 1.91005 1.50628 1.17239 1.84999 1.22999 1.09179 1.02221 0.91297 1.22586 0.90402 0.90183 0.97542 1.18855 0.95730 0.96261 1.05444 1.20656 0.93527 0.94400 0.91760 1.20166 1.01971 0.94047 1.07643 1.20007 0.92059 0.86824 0.93387 1.83875 1.40662 1.17670 1.71421 1.21882 1.01940 0.87761 1.37513 0.88026 1.26663 0.97387 1.00320 0.97749 1.70173 1.16477 1.24095 1.45150 0.84559 0.78108 0.75189 0.78143 1.18483 1.19471 1.17711 1.21091 0.96555 1.00552 1.09588 1.21172 0.98935 0.91109 0.95219 1.23733 1.03407 0.91213 0.97993 1.23038 1.07863 1.03841 0.91593 1.26876 0.99827 0.84313 1.00338 1.84791 1.61827 1.36266 1.14279 1.73728 1.16942 1.16843 1.01232 0.89942 0.92923 0.91747 0.75197 0.81469 0.81266 0.86381 0.88002 0.91750 0.86204 0.83463 0.79262 0.71899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.32 9.47 71.98 0.68 -2.64 16 2 C 0.22 5.12 3.08 44.24 0.14 5.26 16 3 H 0.09 2.42 7.57 -2.38 -0.02 2.40 16 4 N -0.72 -16.31 5.06 -450.48 -2.28 -18.59 16 5 C 0.53 14.88 6.74 86.33 0.58 15.46 16 6 O -0.56 -21.20 11.84 -4.42 -0.05 -21.26 16 7 C -0.24 -5.07 9.90 23.62 0.23 -4.84 16 8 C 0.01 0.29 9.80 23.82 0.23 0.52 16 9 C -0.16 -5.67 4.53 -20.12 -0.09 -5.76 16 10 C 0.01 0.59 6.60 22.55 0.15 0.74 16 11 C -0.22 -10.66 9.97 22.34 0.22 -10.43 16 12 C 0.13 6.97 6.66 22.72 0.15 7.12 16 13 O -0.23 -14.72 9.74 -20.28 -0.20 -14.92 16 14 C -0.42 -25.30 9.48 67.93 0.64 -24.66 16 15 H 0.10 5.70 5.18 -2.91 -0.02 5.68 16 16 C -0.02 -1.40 5.49 84.86 0.47 -0.93 16 17 N -0.92 -58.38 13.67 21.62 0.30 -58.08 16 18 Si 1.02 44.19 29.55 68.60 2.03 46.21 16 19 H -0.26 -10.58 7.11 99.48 0.71 -9.88 16 20 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 21 H -0.25 -10.23 7.11 99.48 0.71 -9.52 16 22 C -0.26 -12.20 9.14 22.35 0.20 -12.00 16 23 C -0.05 -1.74 9.78 22.55 0.22 -1.52 16 24 C 0.00 -0.09 6.27 43.58 0.27 0.18 16 25 C -0.24 -3.16 11.12 22.40 0.25 -2.91 16 26 C -0.03 -0.27 12.30 67.18 0.83 0.55 16 27 O 0.09 1.42 11.20 71.58 0.80 2.22 16 28 N -0.38 -7.43 11.38 -49.55 -0.56 -8.00 16 29 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.06 1.31 8.14 -2.38 -0.02 1.29 16 32 H 0.41 7.75 8.04 -92.71 -0.75 7.00 16 33 H 0.17 2.15 8.06 -2.91 -0.02 2.13 16 34 H 0.17 2.57 8.06 -2.91 -0.02 2.55 16 35 H 0.12 4.23 7.03 -2.91 -0.02 4.21 16 36 H 0.10 5.00 8.06 -2.91 -0.02 4.97 16 37 H 0.27 15.79 8.31 -92.71 -0.77 15.02 16 38 H 0.12 5.65 5.62 -2.91 -0.02 5.64 16 39 H 0.15 4.26 8.06 -2.91 -0.02 4.24 16 40 H 0.19 1.75 8.06 -2.91 -0.02 1.72 16 41 H 0.27 -0.65 8.06 -2.91 -0.02 -0.68 16 Total: -1.00 -84.58 358.65 5.55 -79.04 By element: Atomic # 1 Polarization: 28.89 SS G_CDS: 0.34 Total: 29.23 kcal Atomic # 6 Polarization: -41.03 SS G_CDS: 5.18 Total: -35.85 kcal Atomic # 7 Polarization: -82.12 SS G_CDS: -2.55 Total: -84.67 kcal Atomic # 8 Polarization: -34.51 SS G_CDS: 0.55 Total: -33.96 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.21 kcal Total: -84.58 5.55 -79.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492281325.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.865 kcal (2) G-P(sol) polarization free energy of solvation -84.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.036 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.23 seconds