Wall clock time and date at job start Tue Mar 31 2020 16:03:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.47342 * 2 1 4 4 N 1.46502 * 109.47302 * 239.99820 * 2 1 3 5 5 C 1.34769 * 120.00008 * 85.00255 * 4 2 1 6 6 O 1.21723 * 120.00323 * 359.97438 * 5 4 2 7 7 C 1.46260 * 120.00205 * 180.02562 * 5 4 2 8 8 C 1.35019 * 119.99953 * 179.97438 * 7 5 4 9 9 C 1.46960 * 119.99966 * 179.97438 * 8 7 5 10 10 C 1.40026 * 120.10278 * 180.02562 * 9 8 7 11 11 C 1.37594 * 119.89671 * 179.97438 * 10 9 8 12 12 C 1.39178 * 120.10069 * 0.25354 * 11 10 9 13 13 O 1.35579 * 119.89545 * 179.74677 * 12 11 10 14 14 C 1.34785 * 117.00142 * 354.44034 * 13 12 11 15 15 H 1.08005 * 119.99845 * 5.06100 * 14 13 12 16 16 C 1.38717 * 119.99804 * 185.06117 * 14 13 12 17 17 N 1.31502 * 120.00291 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 119.99602 * 180.02562 * 16 14 13 19 19 H 1.48506 * 109.47470 * 59.99762 * 18 16 14 20 20 H 1.48497 * 109.46946 * 179.97438 * 18 16 14 21 21 H 1.48494 * 109.47053 * 299.99462 * 18 16 14 22 22 C 1.39173 * 120.20483 * 359.49052 * 12 11 10 23 23 C 1.37597 * 120.09959 * 0.50940 * 22 12 11 24 24 C 1.50706 * 109.46947 * 119.99858 * 2 1 3 25 25 C 1.41379 * 126.80261 * 274.99827 * 24 2 1 26 26 C 1.35452 * 103.98476 * 180.02562 * 25 24 2 27 27 O 1.34037 * 106.44817 * 0.02562 * 26 25 24 28 28 N 1.20928 * 111.56433 * 359.70843 * 27 26 25 29 29 H 1.08997 * 109.46732 * 59.99906 * 1 2 3 30 30 H 1.08998 * 109.46609 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47055 * 300.00204 * 1 2 3 32 32 H 0.97000 * 119.99537 * 264.99977 * 4 2 1 33 33 H 1.07994 * 119.99446 * 359.97438 * 7 5 4 34 34 H 1.08003 * 120.00342 * 359.97438 * 8 7 5 35 35 H 1.07997 * 120.04748 * 359.95180 * 10 9 8 36 36 H 1.08000 * 119.95146 * 179.97438 * 11 10 9 37 37 H 0.97001 * 119.99987 * 179.97438 * 17 16 14 38 38 H 1.08004 * 119.95191 * 180.26076 * 22 12 11 39 39 H 1.08000 * 120.05078 * 179.77151 * 23 22 12 40 40 H 1.07997 * 128.00508 * 359.96359 * 25 24 2 41 41 H 1.08001 * 126.77012 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1472 -0.0184 -2.3571 6 8 1.8573 1.1626 -2.4119 7 6 2.6342 -0.7080 -3.5514 8 6 2.7627 -0.0345 -4.7146 9 6 3.2526 -0.7273 -5.9145 10 6 3.3872 -0.0308 -7.1218 11 6 3.8468 -0.6835 -8.2425 12 6 4.1727 -2.0351 -8.1787 13 8 4.6203 -2.6753 -9.2868 14 6 4.6169 -1.9775 -10.4400 15 1 4.3458 -0.9321 -10.4378 16 6 4.9617 -2.6022 -11.6296 17 7 5.2923 -3.8750 -11.6321 18 14 4.9578 -1.6350 -13.2276 19 1 5.9160 -0.5051 -13.1249 20 1 5.3609 -2.5251 -14.3459 21 1 3.5939 -1.1058 -13.4825 22 6 4.0455 -2.7301 -6.9797 23 6 3.5867 -2.0857 -5.8538 24 6 2.0323 -0.7104 1.2305 25 6 2.2216 -0.1494 2.5144 26 6 2.6815 -1.1834 3.2588 27 8 2.7421 -2.2430 2.4402 28 7 2.3738 -1.9631 1.3229 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 2.2491 -1.6318 -1.1525 33 1 2.8910 -1.7558 -3.5028 34 1 2.5055 1.0133 -4.7632 35 1 3.1304 1.0169 -7.1732 36 1 3.9506 -0.1472 -9.1742 37 1 5.5331 -4.3119 -12.4641 38 1 4.3036 -3.7779 -6.9338 39 1 3.4849 -2.6267 -4.9247 40 1 2.0422 0.8682 2.8285 41 1 2.9475 -1.1586 4.3053 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492281326.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:03:48 Heat of formation + Delta-G solvation = 39.291909 kcal Electronic energy + Delta-G solvation = -25269.198772 eV Core-core repulsion = 21311.809209 eV Total energy + Delta-G solvation = -3957.389563 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 2.26 seconds Orbital eigenvalues (eV) -45.36520 -39.77946 -39.14152 -36.99402 -36.38408 -33.62416 -33.20912 -32.31354 -31.96023 -30.63305 -30.41098 -28.12486 -25.72996 -25.03377 -23.49166 -23.26854 -22.17803 -21.22162 -20.41213 -19.50797 -18.45833 -17.98498 -17.91001 -17.14267 -16.99902 -16.36257 -15.19794 -14.94377 -14.82111 -14.71199 -14.43994 -14.03782 -13.99308 -13.81609 -13.69989 -13.41469 -13.14840 -13.02196 -12.59287 -12.44506 -11.95030 -11.92459 -11.77330 -11.71472 -11.65375 -11.10524 -11.07739 -10.70198 -10.56161 -10.54235 -10.09166 -9.83569 -9.60640 -9.49810 -9.25407 -8.85126 -8.37649 -7.11263 -6.64711 -4.19645 1.06150 1.08656 1.77028 2.14306 2.54937 2.83726 3.04271 3.05793 3.06128 3.08353 3.53300 3.64802 3.82623 4.24004 4.51454 4.67178 4.77855 4.89199 4.92529 4.92847 5.03496 5.05708 5.12942 5.27589 5.35938 5.52225 5.53321 5.56433 5.67046 5.67658 5.87767 6.01826 6.12283 6.28022 6.46856 6.48487 6.61733 6.79671 6.92006 7.13415 7.24088 7.28368 7.50587 7.64487 7.80440 7.83261 8.28975 8.79840 9.46820 10.51804 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.031359 B = 0.001737 C = 0.001669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.682270 B =16117.944494 C =16775.887557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.225 3.775 3 H 0.108 0.892 4 N -0.728 5.728 5 C 0.560 3.440 6 O -0.558 6.558 7 C -0.284 4.284 8 C 0.041 3.959 9 C -0.200 4.200 10 C -0.034 4.034 11 C -0.243 4.243 12 C 0.167 3.833 13 O -0.162 6.162 14 C -0.394 4.394 15 H 0.097 0.903 16 C 0.042 3.958 17 N -0.852 5.852 18 Si 0.945 3.055 19 H -0.268 1.268 20 H -0.276 1.276 21 H -0.267 1.267 22 C -0.200 4.200 23 C -0.042 4.042 24 C 0.009 3.991 25 C -0.226 4.226 26 C -0.056 4.056 27 O 0.103 5.897 28 N -0.358 5.358 29 H 0.074 0.926 30 H 0.060 0.940 31 H 0.068 0.932 32 H 0.406 0.594 33 H 0.124 0.876 34 H 0.123 0.877 35 H 0.114 0.886 36 H 0.131 0.869 37 H 0.275 0.725 38 H 0.121 0.879 39 H 0.118 0.882 40 H 0.174 0.826 41 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.241 6.223 25.365 26.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.119 3.881 3 H 0.126 0.874 4 N -0.380 5.380 5 C 0.353 3.647 6 O -0.439 6.439 7 C -0.305 4.305 8 C 0.021 3.979 9 C -0.201 4.201 10 C -0.053 4.053 11 C -0.262 4.262 12 C 0.111 3.889 13 O -0.063 6.063 14 C -0.469 4.469 15 H 0.114 0.886 16 C -0.165 4.165 17 N -0.484 5.484 18 Si 0.769 3.231 19 H -0.193 1.193 20 H -0.201 1.201 21 H -0.192 1.192 22 C -0.219 4.219 23 C -0.061 4.061 24 C -0.150 4.150 25 C -0.248 4.248 26 C -0.137 4.137 27 O 0.035 5.965 28 N -0.061 5.061 29 H 0.093 0.907 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.241 0.759 33 H 0.141 0.859 34 H 0.141 0.859 35 H 0.132 0.868 36 H 0.149 0.851 37 H 0.085 0.915 38 H 0.139 0.861 39 H 0.136 0.864 40 H 0.192 0.808 41 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -6.231 5.587 24.203 25.609 hybrid contribution 0.058 0.789 -0.170 0.809 sum -6.173 6.376 24.033 25.619 Atomic orbital electron populations 1.22163 0.93461 1.02805 1.03249 1.19125 0.94303 0.95951 0.78726 0.87381 1.45868 1.68695 1.14455 1.09027 1.18416 0.76635 0.86385 0.83289 1.90769 1.51721 1.16004 1.85402 1.22397 1.14039 1.01068 0.92976 1.22283 0.86462 0.98467 0.90667 1.18458 1.13615 0.94492 0.93520 1.20985 0.94466 0.98302 0.91519 1.21097 1.10226 0.95064 0.99795 1.19617 0.90130 0.90970 0.88219 1.83906 1.68388 1.39851 1.14130 1.21432 1.48183 0.95124 0.82175 0.88580 1.25393 0.95940 0.96109 0.99008 1.70002 1.40053 1.09743 1.28643 0.85713 0.79328 0.78864 0.79221 1.19256 1.20079 1.19242 1.20153 1.10099 1.00291 0.91341 1.20893 0.95122 0.93212 0.96825 1.23784 1.02742 0.90905 0.97601 1.22691 1.07324 1.02370 0.92367 1.26066 1.02285 0.86135 0.99235 1.84855 1.61953 1.35303 1.14349 1.73777 1.15544 1.16699 1.00037 0.90660 0.92137 0.91341 0.75874 0.85852 0.85875 0.86793 0.85110 0.91537 0.86113 0.86398 0.80822 0.76504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.41 9.47 37.16 0.35 -1.06 16 2 C 0.23 2.26 3.08 -69.08 -0.21 2.05 16 3 H 0.11 1.14 7.58 -51.93 -0.39 0.74 16 4 N -0.73 -8.49 5.06 -56.37 -0.29 -8.77 16 5 C 0.56 8.03 7.70 -13.04 -0.10 7.93 16 6 O -0.56 -9.50 15.89 5.17 0.08 -9.42 16 7 C -0.28 -4.03 9.41 -37.50 -0.35 -4.38 16 8 C 0.04 0.63 9.45 -37.19 -0.35 0.28 16 9 C -0.20 -3.46 5.87 -105.03 -0.62 -4.07 16 10 C -0.03 -0.62 9.78 -39.15 -0.38 -1.00 16 11 C -0.24 -5.05 9.14 -39.47 -0.36 -5.42 16 12 C 0.17 3.88 6.66 -38.89 -0.26 3.62 16 13 O -0.16 -4.42 9.74 0.70 0.01 -4.42 16 14 C -0.39 -10.50 9.48 30.91 0.29 -10.21 16 15 H 0.10 2.35 5.18 -52.48 -0.27 2.08 16 16 C 0.04 1.10 5.49 -17.52 -0.10 1.00 16 17 N -0.85 -23.93 13.67 55.48 0.76 -23.17 16 18 Si 0.94 19.58 29.55 -169.99 -5.02 14.56 16 19 H -0.27 -5.38 7.11 56.52 0.40 -4.97 16 20 H -0.28 -5.60 7.11 56.52 0.40 -5.19 16 21 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 22 C -0.20 -4.05 9.97 -39.47 -0.39 -4.45 16 23 C -0.04 -0.74 9.40 -39.15 -0.37 -1.11 16 24 C 0.01 0.08 6.27 -82.10 -0.52 -0.43 16 25 C -0.23 -1.39 11.12 -39.38 -0.44 -1.83 16 26 C -0.06 -0.27 12.30 29.74 0.37 0.09 16 27 O 0.10 0.85 11.20 17.18 0.19 1.04 16 28 N -0.36 -3.63 11.38 33.42 0.38 -3.25 16 29 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.41 4.38 8.04 -40.82 -0.33 4.05 16 33 H 0.12 1.56 6.06 -52.49 -0.32 1.24 16 34 H 0.12 1.86 7.52 -52.48 -0.39 1.47 16 35 H 0.11 1.72 8.06 -52.49 -0.42 1.30 16 36 H 0.13 2.69 5.62 -52.49 -0.29 2.39 16 37 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 38 H 0.12 2.34 8.06 -52.48 -0.42 1.92 16 39 H 0.12 1.71 6.16 -52.49 -0.32 1.38 16 40 H 0.17 0.63 8.06 -52.49 -0.42 0.21 16 41 H 0.22 0.07 8.06 -52.49 -0.42 -0.35 16 LS Contribution 363.54 15.07 5.48 5.48 Total: -1.00 -32.13 363.54 -6.27 -38.39 By element: Atomic # 1 Polarization: 12.95 SS G_CDS: -4.42 Total: 8.53 kcal Atomic # 6 Polarization: -15.54 SS G_CDS: -3.44 Total: -18.98 kcal Atomic # 7 Polarization: -36.05 SS G_CDS: 0.85 Total: -35.19 kcal Atomic # 8 Polarization: -13.07 SS G_CDS: 0.28 Total: -12.79 kcal Atomic # 14 Polarization: 19.58 SS G_CDS: -5.02 Total: 14.56 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -32.13 -6.27 -38.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492281326.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.687 kcal (2) G-P(sol) polarization free energy of solvation -32.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.395 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.26 seconds