Wall clock time and date at job start Tue Mar 31 2020 16:03:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.47342 * 2 1 4 4 N 1.46502 * 109.47302 * 239.99820 * 2 1 3 5 5 C 1.34769 * 120.00008 * 85.00255 * 4 2 1 6 6 O 1.21723 * 120.00323 * 359.97438 * 5 4 2 7 7 C 1.46260 * 120.00205 * 180.02562 * 5 4 2 8 8 C 1.35019 * 119.99953 * 179.97438 * 7 5 4 9 9 C 1.46960 * 119.99966 * 179.97438 * 8 7 5 10 10 C 1.40026 * 120.10278 * 180.02562 * 9 8 7 11 11 C 1.37594 * 119.89671 * 179.97438 * 10 9 8 12 12 C 1.39178 * 120.10069 * 0.25354 * 11 10 9 13 13 O 1.35579 * 119.89545 * 179.74677 * 12 11 10 14 14 C 1.34785 * 117.00142 * 354.44034 * 13 12 11 15 15 H 1.08005 * 119.99845 * 5.06100 * 14 13 12 16 16 C 1.38717 * 119.99804 * 185.06117 * 14 13 12 17 17 N 1.31502 * 120.00291 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 119.99602 * 180.02562 * 16 14 13 19 19 H 1.48506 * 109.47470 * 59.99762 * 18 16 14 20 20 H 1.48497 * 109.46946 * 179.97438 * 18 16 14 21 21 H 1.48494 * 109.47053 * 299.99462 * 18 16 14 22 22 C 1.39173 * 120.20483 * 359.49052 * 12 11 10 23 23 C 1.37597 * 120.09959 * 0.50940 * 22 12 11 24 24 C 1.50706 * 109.46947 * 119.99858 * 2 1 3 25 25 C 1.41379 * 126.80261 * 274.99827 * 24 2 1 26 26 C 1.35452 * 103.98476 * 180.02562 * 25 24 2 27 27 O 1.34037 * 106.44817 * 0.02562 * 26 25 24 28 28 N 1.20928 * 111.56433 * 359.70843 * 27 26 25 29 29 H 1.08997 * 109.46732 * 59.99906 * 1 2 3 30 30 H 1.08998 * 109.46609 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47055 * 300.00204 * 1 2 3 32 32 H 0.97000 * 119.99537 * 264.99977 * 4 2 1 33 33 H 1.07994 * 119.99446 * 359.97438 * 7 5 4 34 34 H 1.08003 * 120.00342 * 359.97438 * 8 7 5 35 35 H 1.07997 * 120.04748 * 359.95180 * 10 9 8 36 36 H 1.08000 * 119.95146 * 179.97438 * 11 10 9 37 37 H 0.97001 * 119.99987 * 179.97438 * 17 16 14 38 38 H 1.08004 * 119.95191 * 180.26076 * 22 12 11 39 39 H 1.08000 * 120.05078 * 179.77151 * 23 22 12 40 40 H 1.07997 * 128.00508 * 359.96359 * 25 24 2 41 41 H 1.08001 * 126.77012 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1472 -0.0184 -2.3571 6 8 1.8573 1.1626 -2.4119 7 6 2.6342 -0.7080 -3.5514 8 6 2.7627 -0.0345 -4.7146 9 6 3.2526 -0.7273 -5.9145 10 6 3.3872 -0.0308 -7.1218 11 6 3.8468 -0.6835 -8.2425 12 6 4.1727 -2.0351 -8.1787 13 8 4.6203 -2.6753 -9.2868 14 6 4.6169 -1.9775 -10.4400 15 1 4.3458 -0.9321 -10.4378 16 6 4.9617 -2.6022 -11.6296 17 7 5.2923 -3.8750 -11.6321 18 14 4.9578 -1.6350 -13.2276 19 1 5.9160 -0.5051 -13.1249 20 1 5.3609 -2.5251 -14.3459 21 1 3.5939 -1.1058 -13.4825 22 6 4.0455 -2.7301 -6.9797 23 6 3.5867 -2.0857 -5.8538 24 6 2.0323 -0.7104 1.2305 25 6 2.2216 -0.1494 2.5144 26 6 2.6815 -1.1834 3.2588 27 8 2.7421 -2.2430 2.4402 28 7 2.3738 -1.9631 1.3229 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 2.2491 -1.6318 -1.1525 33 1 2.8910 -1.7558 -3.5028 34 1 2.5055 1.0133 -4.7632 35 1 3.1304 1.0169 -7.1732 36 1 3.9506 -0.1472 -9.1742 37 1 5.5331 -4.3119 -12.4641 38 1 4.3036 -3.7779 -6.9338 39 1 3.4849 -2.6267 -4.9247 40 1 2.0422 0.8682 2.8285 41 1 2.9475 -1.1586 4.3053 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492281326.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:03:47 Heat of formation + Delta-G solvation = 18.712269 kcal Electronic energy + Delta-G solvation = -25270.091172 eV Core-core repulsion = 21311.809209 eV Total energy + Delta-G solvation = -3958.281963 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -45.93643 -41.00011 -40.70924 -38.55998 -37.32896 -34.75787 -34.37520 -33.99688 -32.53112 -31.99057 -31.50403 -29.56350 -27.52686 -25.92501 -24.51263 -24.01761 -23.71148 -22.37734 -21.31534 -20.79674 -19.86376 -18.99780 -18.76537 -18.52493 -18.13255 -17.27822 -16.49203 -16.46249 -16.05702 -15.92094 -15.70052 -15.61500 -15.20871 -14.92171 -14.66777 -14.61152 -14.16660 -14.12698 -13.92077 -13.60550 -13.32683 -13.24285 -13.12308 -12.68593 -12.62232 -12.56754 -12.34818 -12.24533 -12.14947 -11.22994 -11.18649 -11.12496 -11.04071 -10.60175 -10.57460 -10.22431 -9.91105 -8.70735 -8.52714 -6.19092 -0.28286 0.56893 0.61194 1.10174 1.23111 1.35477 1.46980 1.51454 2.10770 2.15079 2.30580 2.44172 2.85205 3.01706 3.16250 3.40722 3.68356 3.75229 3.92398 4.05494 4.07148 4.15126 4.27235 4.30892 4.34299 4.42478 4.46223 4.63039 4.64264 4.75280 4.85320 4.92630 5.01072 5.09713 5.15916 5.17931 5.22669 5.30861 5.38507 5.56517 5.62105 5.79092 5.96244 6.08624 6.46115 6.91319 7.14599 7.32381 7.68063 8.69115 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.031359 B = 0.001737 C = 0.001669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.682270 B =16117.944494 C =16775.887557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.222 3.778 3 H 0.103 0.897 4 N -0.717 5.717 5 C 0.557 3.443 6 O -0.584 6.584 7 C -0.253 4.253 8 C 0.023 3.977 9 C -0.173 4.173 10 C -0.037 4.037 11 C -0.249 4.249 12 C 0.131 3.869 13 O -0.219 6.219 14 C -0.418 4.418 15 H 0.107 0.893 16 C -0.019 4.019 17 N -0.913 5.913 18 Si 1.019 2.981 19 H -0.256 1.256 20 H -0.272 1.272 21 H -0.257 1.257 22 C -0.208 4.208 23 C -0.039 4.039 24 C -0.007 4.007 25 C -0.235 4.235 26 C -0.037 4.037 27 O 0.091 5.909 28 N -0.389 5.389 29 H 0.059 0.941 30 H 0.057 0.943 31 H 0.090 0.910 32 H 0.412 0.588 33 H 0.145 0.855 34 H 0.130 0.870 35 H 0.147 0.853 36 H 0.127 0.873 37 H 0.275 0.725 38 H 0.121 0.879 39 H 0.156 0.844 40 H 0.198 0.802 41 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.287 8.122 29.126 31.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.117 3.883 3 H 0.121 0.879 4 N -0.368 5.368 5 C 0.349 3.651 6 O -0.467 6.467 7 C -0.273 4.273 8 C 0.004 3.996 9 C -0.174 4.174 10 C -0.055 4.055 11 C -0.268 4.268 12 C 0.079 3.921 13 O -0.124 6.124 14 C -0.494 4.494 15 H 0.124 0.876 16 C -0.217 4.217 17 N -0.550 5.550 18 Si 0.838 3.162 19 H -0.181 1.181 20 H -0.196 1.196 21 H -0.181 1.181 22 C -0.227 4.227 23 C -0.056 4.056 24 C -0.166 4.166 25 C -0.257 4.257 26 C -0.118 4.118 27 O 0.024 5.976 28 N -0.094 5.094 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.109 0.891 32 H 0.248 0.752 33 H 0.162 0.838 34 H 0.148 0.852 35 H 0.165 0.835 36 H 0.144 0.856 37 H 0.084 0.916 38 H 0.139 0.861 39 H 0.173 0.827 40 H 0.215 0.785 41 H 0.279 0.721 Dipole moment (debyes) X Y Z Total from point charges -7.302 7.503 28.054 29.944 hybrid contribution 0.207 0.344 -0.627 0.744 sum -7.094 7.847 27.428 29.397 Atomic orbital electron populations 1.22097 0.92624 1.02689 1.03580 1.19215 0.94949 0.95639 0.78498 0.87907 1.45848 1.67353 1.14685 1.08935 1.18451 0.76626 0.86067 0.83998 1.90770 1.52872 1.17171 1.85886 1.22707 1.10400 1.01826 0.92392 1.22190 0.88295 0.98960 0.90189 1.18780 1.10347 0.94325 0.93924 1.21328 0.93595 0.99911 0.90687 1.21215 1.10388 0.94362 1.00829 1.20180 0.91342 0.92313 0.88300 1.83889 1.72086 1.41258 1.15178 1.21879 1.48916 0.95791 0.82805 0.87620 1.26629 0.95377 0.97163 1.02568 1.70143 1.43476 1.11883 1.29513 0.84639 0.79882 0.77441 0.74250 1.18065 1.19602 1.18102 1.20404 1.10259 1.00661 0.91421 1.21268 0.93684 0.93489 0.97188 1.23820 1.03398 0.91135 0.98232 1.23047 1.07592 1.03865 0.91173 1.26926 0.99952 0.84508 1.00413 1.84806 1.61917 1.36525 1.14308 1.73773 1.16990 1.17352 1.01284 0.92228 0.92399 0.89112 0.75199 0.83758 0.85196 0.83496 0.85550 0.91573 0.86051 0.82700 0.78497 0.72055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.40 9.47 71.98 0.68 -1.71 16 2 C 0.22 4.01 3.08 44.25 0.14 4.14 16 3 H 0.10 1.97 7.58 -2.39 -0.02 1.96 16 4 N -0.72 -14.99 5.06 -450.48 -2.28 -17.27 16 5 C 0.56 14.43 7.70 86.33 0.66 15.09 16 6 O -0.58 -18.58 15.89 -4.42 -0.07 -18.65 16 7 C -0.25 -6.22 9.41 23.62 0.22 -6.00 16 8 C 0.02 0.64 9.45 23.82 0.23 0.87 16 9 C -0.17 -5.51 5.87 -20.13 -0.12 -5.63 16 10 C -0.04 -1.27 9.78 22.55 0.22 -1.05 16 11 C -0.25 -10.50 9.14 22.34 0.20 -10.29 16 12 C 0.13 6.32 6.66 22.72 0.15 6.47 16 13 O -0.22 -12.81 9.74 -20.40 -0.20 -13.01 16 14 C -0.42 -23.65 9.48 67.93 0.64 -23.01 16 15 H 0.11 5.43 5.18 -2.91 -0.02 5.42 16 16 C -0.02 -1.03 5.49 84.86 0.47 -0.56 16 17 N -0.91 -54.69 13.67 21.62 0.30 -54.39 16 18 Si 1.02 41.62 29.55 68.60 2.03 43.65 16 19 H -0.26 -9.83 7.11 99.48 0.71 -9.13 16 20 H -0.27 -10.69 7.11 99.48 0.71 -9.98 16 21 H -0.26 -9.86 7.11 99.48 0.71 -9.16 16 22 C -0.21 -8.53 9.97 22.34 0.22 -8.31 16 23 C -0.04 -1.26 9.40 22.55 0.21 -1.05 16 24 C -0.01 -0.11 6.27 43.58 0.27 0.16 16 25 C -0.23 -2.14 11.12 22.40 0.25 -1.89 16 26 C -0.04 -0.23 12.30 67.18 0.83 0.60 16 27 O 0.09 1.28 11.20 71.66 0.80 2.08 16 28 N -0.39 -7.15 11.38 -49.55 -0.56 -7.71 16 29 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.41 7.83 8.04 -92.71 -0.75 7.08 16 33 H 0.14 2.95 6.06 -2.91 -0.02 2.94 16 34 H 0.13 3.50 7.52 -2.91 -0.02 3.48 16 35 H 0.15 4.02 8.06 -2.91 -0.02 3.99 16 36 H 0.13 5.35 5.62 -2.91 -0.02 5.33 16 37 H 0.28 15.10 8.31 -92.71 -0.77 14.33 16 38 H 0.12 4.85 8.06 -2.91 -0.02 4.82 16 39 H 0.16 3.85 6.16 -2.91 -0.02 3.84 16 40 H 0.20 0.69 8.06 -2.91 -0.02 0.67 16 41 H 0.26 -1.16 8.06 -2.91 -0.02 -1.19 16 Total: -1.00 -75.67 363.54 5.64 -70.03 By element: Atomic # 1 Polarization: 27.10 SS G_CDS: 0.35 Total: 27.44 kcal Atomic # 6 Polarization: -37.46 SS G_CDS: 5.28 Total: -32.18 kcal Atomic # 7 Polarization: -76.82 SS G_CDS: -2.55 Total: -79.37 kcal Atomic # 8 Polarization: -30.11 SS G_CDS: 0.53 Total: -29.58 kcal Atomic # 14 Polarization: 41.62 SS G_CDS: 2.03 Total: 43.65 kcal Total: -75.67 5.64 -70.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492281326.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.744 kcal (2) G-P(sol) polarization free energy of solvation -75.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.032 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds