Wall clock time and date at job start Tue Mar 31 2020 14:47:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34328 * 126.44316 * 2 1 4 4 N 1.34482 * 107.66808 * 179.76513 * 3 2 1 5 5 C 1.30259 * 108.70147 * 0.41689 * 4 3 2 6 6 C 1.50691 * 125.62223 * 179.83850 * 5 4 3 7 7 N 1.46504 * 109.47390 * 89.69758 * 6 5 4 8 8 C 1.34772 * 120.00606 * 180.02562 * 7 6 5 9 9 O 1.21721 * 119.99474 * 359.97438 * 8 7 6 10 10 C 1.46251 * 120.00400 * 180.02562 * 8 7 6 11 11 C 1.35024 * 120.00158 * 173.06793 * 10 8 7 12 12 C 1.46959 * 119.99972 * 348.87015 * 11 10 8 13 13 C 1.40028 * 120.09993 * 311.82228 * 12 11 10 14 14 C 1.37601 * 119.89483 * 179.69965 * 13 12 11 15 15 C 1.39173 * 120.10144 * 0.59067 * 14 13 12 16 16 O 1.35574 * 119.90009 * 179.69756 * 15 14 13 17 17 C 1.34776 * 117.00116 * 185.62203 * 16 15 14 18 18 H 1.08003 * 119.99890 * 354.90199 * 17 16 15 19 19 C 1.38720 * 120.00019 * 174.91044 * 17 16 15 20 20 N 1.31509 * 119.99882 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 120.00131 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.46886 * 59.99537 * 21 19 17 23 23 H 1.48501 * 109.47088 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.46895 * 300.00032 * 21 19 17 25 25 C 1.39177 * 120.20436 * 359.68411 * 15 14 13 26 26 C 1.37604 * 120.10114 * 0.02562 * 25 15 14 27 27 O 1.33971 * 108.75716 * 359.57714 * 5 4 3 28 28 H 1.08996 * 109.46868 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47006 * 300.00637 * 1 2 3 30 30 H 1.09000 * 109.46598 * 60.00174 * 1 2 3 31 31 H 1.07998 * 126.16751 * 0.02562 * 3 2 1 32 32 H 1.09000 * 109.47561 * 329.69778 * 6 5 4 33 33 H 1.08997 * 109.47533 * 209.69902 * 6 5 4 34 34 H 0.97006 * 119.99664 * 359.97438 * 7 6 5 35 35 H 1.08007 * 119.99914 * 353.06527 * 10 8 7 36 36 H 1.08003 * 119.99777 * 168.59075 * 11 10 8 37 37 H 1.08002 * 120.05239 * 359.97438 * 13 12 11 38 38 H 1.07998 * 119.94517 * 180.26976 * 14 13 12 39 39 H 0.96995 * 119.99826 * 179.97438 * 20 19 17 40 40 H 1.07998 * 119.95042 * 179.97438 * 25 15 14 41 41 H 1.08001 * 120.05290 * 180.02562 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3050 1.0806 0.0000 4 7 3.5782 0.6478 0.0053 5 6 3.5766 -0.6548 -0.0006 6 6 4.8004 -1.5340 -0.0010 7 7 5.1974 -1.8192 1.3801 8 6 6.2739 -2.5920 1.6260 9 8 6.9160 -3.0533 0.7005 10 6 6.6698 -2.8771 3.0047 11 6 7.6595 -3.7612 3.2538 12 6 8.1712 -4.6152 2.1728 13 6 7.2806 -5.3125 1.3474 14 6 7.7642 -6.1060 0.3325 15 6 9.1364 -6.2258 0.1336 16 8 9.6085 -7.0136 -0.8636 17 6 10.9442 -7.1802 -0.9315 18 1 11.5915 -6.6317 -0.2632 19 6 11.4876 -8.0561 -1.8599 20 7 10.6994 -8.7242 -2.6734 21 14 13.3390 -8.2864 -1.9545 22 1 13.8426 -8.7877 -0.6506 23 1 13.6617 -9.2690 -3.0202 24 1 13.9842 -6.9861 -2.2676 25 6 10.0255 -5.5392 0.9552 26 6 9.5510 -4.7386 1.9688 27 8 2.3075 -1.0840 -0.0003 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3632 0.5138 -0.8900 31 1 1.9822 2.1112 0.0004 32 1 5.6147 -1.0232 -0.5150 33 1 4.5762 -2.4687 -0.5150 34 1 4.6859 -1.4513 2.1176 35 1 6.1707 -2.3804 3.8236 36 1 8.0781 -3.8376 4.2465 37 1 6.2157 -5.2241 1.5042 38 1 7.0779 -6.6407 -0.3073 39 1 11.0794 -9.3363 -3.3228 40 1 11.0896 -5.6354 0.7975 41 1 10.2416 -4.2058 2.6056 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493149852.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:00 Heat of formation + Delta-G solvation = 17.253309 kcal Electronic energy + Delta-G solvation = -25917.156324 eV Core-core repulsion = 21958.811096 eV Total energy + Delta-G solvation = -3958.345228 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.72143 -39.75419 -38.71474 -36.60295 -35.28175 -34.84277 -33.07960 -32.77854 -32.11155 -30.11329 -29.41894 -27.82260 -25.81416 -25.30500 -23.13853 -22.53450 -21.77447 -21.41642 -20.96939 -19.47888 -17.94477 -17.56385 -17.27968 -16.93243 -16.59012 -15.78306 -15.31685 -14.86545 -14.71377 -14.53474 -14.26554 -14.05912 -13.75153 -13.58598 -13.55346 -13.27796 -13.22184 -13.03088 -12.86927 -12.71991 -12.51114 -12.17820 -11.71028 -11.68758 -11.32758 -10.97955 -10.89860 -10.68920 -10.64162 -10.42142 -9.66693 -9.39613 -9.21758 -9.11585 -9.07010 -8.69743 -7.96668 -6.87811 -6.43903 -3.99829 0.95472 1.25382 2.16304 2.25397 2.42776 2.65187 3.15109 3.17034 3.18851 3.31406 3.55781 3.67975 3.98854 4.34449 4.59629 4.68958 4.69134 4.90477 4.94280 5.09443 5.14967 5.19816 5.23285 5.34024 5.35634 5.50176 5.59967 5.65131 5.74893 5.85065 5.89385 6.23651 6.26275 6.31808 6.43157 6.57994 6.79079 7.04029 7.13084 7.34128 7.35836 7.44076 7.51579 7.52531 7.92979 8.02559 8.42425 9.01657 9.73762 10.73901 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.019381 B = 0.002179 C = 0.002050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.375503 B =12844.532544 C =13655.156835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.041 4.041 3 C -0.046 4.046 4 N -0.462 5.462 5 C 0.173 3.827 6 C 0.223 3.777 7 N -0.735 5.735 8 C 0.544 3.456 9 O -0.505 6.505 10 C -0.261 4.261 11 C 0.030 3.970 12 C -0.184 4.184 13 C -0.001 4.001 14 C -0.198 4.198 15 C 0.169 3.831 16 O -0.173 6.173 17 C -0.390 4.390 18 H 0.093 0.907 19 C 0.039 3.961 20 N -0.860 5.860 21 Si 0.942 3.058 22 H -0.269 1.269 23 H -0.278 1.278 24 H -0.269 1.269 25 C -0.246 4.246 26 C -0.043 4.043 27 O -0.194 6.194 28 H 0.079 0.921 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.185 0.815 32 H 0.111 0.889 33 H 0.098 0.902 34 H 0.399 0.601 35 H 0.122 0.878 36 H 0.123 0.877 37 H 0.101 0.899 38 H 0.114 0.886 39 H 0.271 0.729 40 H 0.126 0.874 41 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.495 16.449 10.121 26.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.095 4.095 3 C -0.185 4.185 4 N -0.191 5.191 5 C -0.033 4.033 6 C 0.098 3.902 7 N -0.391 5.391 8 C 0.335 3.665 9 O -0.381 6.381 10 C -0.283 4.283 11 C 0.010 3.990 12 C -0.185 4.185 13 C -0.020 4.020 14 C -0.217 4.217 15 C 0.114 3.886 16 O -0.075 6.075 17 C -0.466 4.466 18 H 0.110 0.890 19 C -0.166 4.166 20 N -0.495 5.495 21 Si 0.766 3.234 22 H -0.195 1.195 23 H -0.203 1.203 24 H -0.195 1.195 25 C -0.266 4.266 26 C -0.061 4.061 27 O -0.081 6.081 28 H 0.098 0.902 29 H 0.109 0.891 30 H 0.109 0.891 31 H 0.202 0.798 32 H 0.129 0.871 33 H 0.116 0.884 34 H 0.233 0.767 35 H 0.140 0.860 36 H 0.141 0.859 37 H 0.119 0.881 38 H 0.132 0.868 39 H 0.081 0.919 40 H 0.144 0.856 41 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -16.551 16.089 9.019 24.782 hybrid contribution -0.084 0.033 0.299 0.312 sum -16.636 16.122 9.318 24.970 Atomic orbital electron populations 1.20319 0.83777 1.04602 1.04015 1.23602 0.95229 0.84580 1.06084 1.23130 0.87665 1.00539 1.07214 1.70491 1.23180 1.09078 1.16389 1.26173 0.84269 0.90286 1.02618 1.19429 0.87777 0.96966 0.86009 1.45940 1.31701 1.54574 1.06856 1.18482 0.79405 0.78017 0.90633 1.91029 1.51652 1.49546 1.45831 1.22557 1.05025 1.06048 0.94628 1.22361 0.90209 0.88821 0.97580 1.18287 0.93366 1.05463 1.01371 1.20428 0.96934 0.92616 0.92010 1.20002 0.92708 1.06746 1.02276 1.19527 0.92626 0.89430 0.87002 1.83906 1.25126 1.57142 1.41356 1.21339 0.79056 1.25685 1.20553 0.88953 1.25322 1.00549 0.95315 0.95392 1.70012 1.35539 1.24896 1.19032 0.85768 0.80527 0.78630 0.78444 1.19461 1.20282 1.19452 1.20964 1.00105 1.04768 1.00723 1.20720 0.93458 0.95678 0.96276 1.84444 1.17784 1.36560 1.69279 0.90175 0.89147 0.89129 0.79763 0.87136 0.88414 0.76729 0.86008 0.85881 0.88065 0.86798 0.91922 0.85634 0.87588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.28 10.43 36.01 0.38 0.09 16 2 C -0.04 -0.34 7.39 -35.69 -0.26 -0.61 16 3 C -0.05 -0.42 11.80 -17.77 -0.21 -0.62 16 4 N -0.46 -5.42 11.29 -11.10 -0.13 -5.55 16 5 C 0.17 1.94 7.71 -12.95 -0.10 1.84 16 6 C 0.22 2.53 6.30 -5.20 -0.03 2.50 16 7 N -0.73 -8.29 5.54 -62.94 -0.35 -8.64 16 8 C 0.54 7.83 6.95 -13.04 -0.09 7.74 16 9 O -0.51 -9.55 12.48 5.17 0.06 -9.49 16 10 C -0.26 -3.21 9.92 -37.51 -0.37 -3.58 16 11 C 0.03 0.41 9.77 -37.19 -0.36 0.04 16 12 C -0.18 -3.35 4.34 -105.03 -0.46 -3.80 16 13 C 0.00 -0.03 6.77 -39.14 -0.27 -0.29 16 14 C -0.20 -4.51 9.97 -39.47 -0.39 -4.90 16 15 C 0.17 4.29 6.66 -38.89 -0.26 4.03 16 16 O -0.17 -5.09 9.74 0.74 0.01 -5.08 16 17 C -0.39 -11.13 9.48 30.91 0.29 -10.84 16 18 H 0.09 2.43 5.18 -52.48 -0.27 2.16 16 19 C 0.04 1.08 5.49 -17.51 -0.10 0.99 16 20 N -0.86 -25.56 13.67 55.48 0.76 -24.80 16 21 Si 0.94 20.78 29.55 -169.99 -5.02 15.76 16 22 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 23 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 24 H -0.27 -5.78 7.11 56.52 0.40 -5.37 16 25 C -0.25 -5.62 9.14 -39.46 -0.36 -5.98 16 26 C -0.04 -0.83 9.78 -39.14 -0.38 -1.21 16 27 O -0.19 -2.08 10.78 5.35 0.06 -2.02 16 28 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.19 1.08 8.06 -52.49 -0.42 0.66 16 32 H 0.11 1.33 8.14 -51.93 -0.42 0.90 16 33 H 0.10 1.12 8.14 -51.93 -0.42 0.69 16 34 H 0.40 3.59 8.44 -40.82 -0.34 3.24 16 35 H 0.12 1.06 8.06 -52.48 -0.42 0.64 16 36 H 0.12 1.29 8.06 -52.48 -0.42 0.87 16 37 H 0.10 1.78 7.46 -52.49 -0.39 1.39 16 38 H 0.11 2.52 8.06 -52.49 -0.42 2.10 16 39 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 40 H 0.13 2.83 5.62 -52.49 -0.29 2.54 16 41 H 0.11 1.72 8.06 -52.49 -0.42 1.29 16 LS Contribution 362.31 15.07 5.46 5.46 Total: -1.00 -35.44 362.31 -6.79 -42.23 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: -4.67 Total: 6.72 kcal Atomic # 6 Polarization: -11.62 SS G_CDS: -2.98 Total: -14.60 kcal Atomic # 7 Polarization: -39.27 SS G_CDS: 0.28 Total: -38.99 kcal Atomic # 8 Polarization: -16.72 SS G_CDS: 0.13 Total: -16.59 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -35.44 -6.79 -42.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493149852.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.488 kcal (2) G-P(sol) polarization free energy of solvation -35.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.235 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds