Wall clock time and date at job start Tue Mar 31 2020 14:46:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34328 * 126.44316 * 2 1 4 4 N 1.34482 * 107.66808 * 179.76513 * 3 2 1 5 5 C 1.30259 * 108.70147 * 0.41689 * 4 3 2 6 6 C 1.50691 * 125.62223 * 179.83850 * 5 4 3 7 7 N 1.46504 * 109.47390 * 89.69758 * 6 5 4 8 8 C 1.34772 * 120.00606 * 180.02562 * 7 6 5 9 9 O 1.21721 * 119.99474 * 359.97438 * 8 7 6 10 10 C 1.46251 * 120.00400 * 180.02562 * 8 7 6 11 11 C 1.35024 * 120.00158 * 173.06793 * 10 8 7 12 12 C 1.46959 * 119.99972 * 348.87015 * 11 10 8 13 13 C 1.40028 * 120.09993 * 311.82228 * 12 11 10 14 14 C 1.37601 * 119.89483 * 179.69965 * 13 12 11 15 15 C 1.39173 * 120.10144 * 0.59067 * 14 13 12 16 16 O 1.35574 * 119.90009 * 179.69756 * 15 14 13 17 17 C 1.34776 * 117.00116 * 185.62203 * 16 15 14 18 18 H 1.08003 * 119.99890 * 354.90199 * 17 16 15 19 19 C 1.38720 * 120.00019 * 174.91044 * 17 16 15 20 20 N 1.31509 * 119.99882 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 120.00131 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.46886 * 59.99537 * 21 19 17 23 23 H 1.48501 * 109.47088 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.46895 * 300.00032 * 21 19 17 25 25 C 1.39177 * 120.20436 * 359.68411 * 15 14 13 26 26 C 1.37604 * 120.10114 * 0.02562 * 25 15 14 27 27 O 1.33971 * 108.75716 * 359.57714 * 5 4 3 28 28 H 1.08996 * 109.46868 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47006 * 300.00637 * 1 2 3 30 30 H 1.09000 * 109.46598 * 60.00174 * 1 2 3 31 31 H 1.07998 * 126.16751 * 0.02562 * 3 2 1 32 32 H 1.09000 * 109.47561 * 329.69778 * 6 5 4 33 33 H 1.08997 * 109.47533 * 209.69902 * 6 5 4 34 34 H 0.97006 * 119.99664 * 359.97438 * 7 6 5 35 35 H 1.08007 * 119.99914 * 353.06527 * 10 8 7 36 36 H 1.08003 * 119.99777 * 168.59075 * 11 10 8 37 37 H 1.08002 * 120.05239 * 359.97438 * 13 12 11 38 38 H 1.07998 * 119.94517 * 180.26976 * 14 13 12 39 39 H 0.96995 * 119.99826 * 179.97438 * 20 19 17 40 40 H 1.07998 * 119.95042 * 179.97438 * 25 15 14 41 41 H 1.08001 * 120.05290 * 180.02562 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3050 1.0806 0.0000 4 7 3.5782 0.6478 0.0053 5 6 3.5766 -0.6548 -0.0006 6 6 4.8004 -1.5340 -0.0010 7 7 5.1974 -1.8192 1.3801 8 6 6.2739 -2.5920 1.6260 9 8 6.9160 -3.0533 0.7005 10 6 6.6698 -2.8771 3.0047 11 6 7.6595 -3.7612 3.2538 12 6 8.1712 -4.6152 2.1728 13 6 7.2806 -5.3125 1.3474 14 6 7.7642 -6.1060 0.3325 15 6 9.1364 -6.2258 0.1336 16 8 9.6085 -7.0136 -0.8636 17 6 10.9442 -7.1802 -0.9315 18 1 11.5915 -6.6317 -0.2632 19 6 11.4876 -8.0561 -1.8599 20 7 10.6994 -8.7242 -2.6734 21 14 13.3390 -8.2864 -1.9545 22 1 13.8426 -8.7877 -0.6506 23 1 13.6617 -9.2690 -3.0202 24 1 13.9842 -6.9861 -2.2676 25 6 10.0255 -5.5392 0.9552 26 6 9.5510 -4.7386 1.9688 27 8 2.3075 -1.0840 -0.0003 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3632 0.5138 -0.8900 31 1 1.9822 2.1112 0.0004 32 1 5.6147 -1.0232 -0.5150 33 1 4.5762 -2.4687 -0.5150 34 1 4.6859 -1.4513 2.1176 35 1 6.1707 -2.3804 3.8236 36 1 8.0781 -3.8376 4.2465 37 1 6.2157 -5.2241 1.5042 38 1 7.0779 -6.6407 -0.3073 39 1 11.0794 -9.3363 -3.3228 40 1 11.0896 -5.6354 0.7975 41 1 10.2416 -4.2058 2.6056 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493149852.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:59 Heat of formation + Delta-G solvation = -9.910268 kcal Electronic energy + Delta-G solvation = -25918.334225 eV Core-core repulsion = 21958.811096 eV Total energy + Delta-G solvation = -3959.523129 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -44.47375 -41.08710 -40.38990 -38.25418 -36.28684 -35.74306 -34.59395 -33.94004 -33.39023 -31.80530 -30.45327 -29.15141 -27.41381 -26.44817 -24.35479 -23.50117 -23.33674 -22.45431 -22.15462 -20.70014 -19.78729 -18.95659 -18.30321 -18.13614 -17.69494 -16.81935 -16.37231 -16.35082 -16.24282 -15.84381 -15.51734 -15.44842 -15.25311 -14.69933 -14.54206 -14.51479 -14.26917 -14.04419 -13.83881 -13.80646 -13.72974 -13.55809 -13.24664 -12.98316 -12.61007 -12.50970 -12.38386 -12.21300 -12.14078 -11.66930 -11.21972 -11.00145 -10.74037 -10.43052 -10.17923 -9.77476 -9.62180 -8.57599 -8.47124 -6.14182 0.03086 0.21356 0.72563 1.08341 1.34232 1.41813 1.47148 1.51277 1.52937 2.18357 2.37701 2.42332 2.87382 2.90552 3.23624 3.52358 3.75062 3.93275 4.00250 4.05211 4.12446 4.16258 4.18674 4.37113 4.45377 4.56404 4.60203 4.62544 4.68888 4.78401 4.98235 5.07064 5.10457 5.12690 5.22536 5.24910 5.26834 5.28937 5.45779 5.68596 5.74238 5.83088 6.03753 6.26517 6.53951 6.59169 6.96809 7.31919 7.79402 8.75954 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.019381 B = 0.002179 C = 0.002050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.375503 B =12844.532544 C =13655.156835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.034 4.034 3 C -0.063 4.063 4 N -0.483 5.483 5 C 0.157 3.843 6 C 0.226 3.774 7 N -0.716 5.716 8 C 0.534 3.466 9 O -0.559 6.559 10 C -0.227 4.227 11 C 0.010 3.990 12 C -0.153 4.153 13 C 0.000 4.000 14 C -0.215 4.215 15 C 0.124 3.876 16 O -0.232 6.232 17 C -0.415 4.415 18 H 0.102 0.898 19 C -0.025 4.025 20 N -0.921 5.921 21 Si 1.022 2.978 22 H -0.255 1.255 23 H -0.271 1.271 24 H -0.258 1.258 25 C -0.255 4.255 26 C -0.050 4.050 27 O -0.208 6.208 28 H 0.081 0.919 29 H 0.113 0.887 30 H 0.109 0.891 31 H 0.212 0.788 32 H 0.100 0.900 33 H 0.092 0.908 34 H 0.414 0.586 35 H 0.174 0.826 36 H 0.172 0.828 37 H 0.123 0.877 38 H 0.103 0.897 39 H 0.273 0.727 40 H 0.119 0.881 41 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.941 19.585 13.788 30.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.087 4.087 3 C -0.201 4.201 4 N -0.214 5.214 5 C -0.049 4.049 6 C 0.102 3.898 7 N -0.371 5.371 8 C 0.325 3.675 9 O -0.438 6.438 10 C -0.247 4.247 11 C -0.009 4.009 12 C -0.154 4.154 13 C -0.018 4.018 14 C -0.235 4.235 15 C 0.073 3.927 16 O -0.138 6.138 17 C -0.491 4.491 18 H 0.120 0.880 19 C -0.222 4.222 20 N -0.559 5.559 21 Si 0.840 3.160 22 H -0.179 1.179 23 H -0.195 1.195 24 H -0.182 1.182 25 C -0.274 4.274 26 C -0.068 4.068 27 O -0.094 6.094 28 H 0.100 0.900 29 H 0.132 0.868 30 H 0.128 0.872 31 H 0.229 0.771 32 H 0.118 0.882 33 H 0.110 0.890 34 H 0.251 0.749 35 H 0.191 0.809 36 H 0.189 0.811 37 H 0.141 0.859 38 H 0.121 0.879 39 H 0.082 0.918 40 H 0.137 0.863 41 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -18.071 19.291 12.761 29.352 hybrid contribution -0.091 -0.530 -0.582 0.792 sum -18.162 18.761 12.179 28.812 Atomic orbital electron populations 1.20578 0.80645 1.05371 1.06008 1.24460 0.96783 0.83704 1.03749 1.23636 0.86751 1.02100 1.07656 1.70452 1.24970 1.09336 1.16610 1.25876 0.84395 0.90149 1.04441 1.19256 0.87951 0.96717 0.85910 1.45783 1.30721 1.53148 1.07438 1.19078 0.79400 0.77689 0.91291 1.91039 1.53566 1.51646 1.47593 1.22998 1.02763 1.04534 0.94429 1.22596 0.91238 0.89171 0.97942 1.18875 0.92741 1.03189 1.00604 1.20700 0.98403 0.91640 0.91089 1.20199 0.91878 1.07769 1.03612 1.20026 0.94073 0.90635 0.87982 1.83874 1.25593 1.60140 1.44184 1.21837 0.79454 1.26476 1.21334 0.88033 1.26673 1.06346 0.94602 0.94617 1.70170 1.38136 1.26825 1.20774 0.84617 0.73250 0.79027 0.79093 1.17891 1.19507 1.18244 1.21107 0.99573 1.05315 1.01436 1.21160 0.94994 0.95047 0.95576 1.84444 1.17825 1.37696 1.69429 0.90016 0.86828 0.87225 0.77089 0.88219 0.89017 0.74948 0.80869 0.81105 0.85888 0.87921 0.91795 0.86282 0.83519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.33 10.43 71.24 0.74 0.41 16 2 C -0.03 -0.48 7.39 24.79 0.18 -0.30 16 3 C -0.06 -0.99 11.80 83.39 0.98 -0.01 16 4 N -0.48 -10.75 11.29 -303.83 -3.43 -14.18 16 5 C 0.16 3.39 7.71 88.34 0.68 4.07 16 6 C 0.23 5.07 6.30 85.63 0.54 5.61 16 7 N -0.72 -14.46 5.54 -471.26 -2.61 -17.07 16 8 C 0.53 13.85 6.95 86.33 0.60 14.45 16 9 O -0.56 -20.66 12.48 -4.42 -0.06 -20.71 16 10 C -0.23 -4.29 9.92 23.61 0.23 -4.05 16 11 C 0.01 0.21 9.77 23.82 0.23 0.45 16 12 C -0.15 -5.20 4.34 -20.13 -0.09 -5.29 16 13 C 0.00 0.00 6.77 22.55 0.15 0.15 16 14 C -0.22 -10.38 9.97 22.34 0.22 -10.16 16 15 C 0.12 6.71 6.66 22.72 0.15 6.87 16 16 O -0.23 -14.86 9.74 -20.26 -0.20 -15.05 16 17 C -0.42 -25.35 9.48 67.94 0.64 -24.71 16 18 H 0.10 5.69 5.18 -2.91 -0.02 5.67 16 19 C -0.03 -1.48 5.49 84.86 0.47 -1.01 16 20 N -0.92 -58.57 13.67 21.62 0.30 -58.27 16 21 Si 1.02 44.34 29.55 68.60 2.03 46.36 16 22 H -0.25 -10.29 7.11 99.48 0.71 -9.59 16 23 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 24 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 25 C -0.26 -12.01 9.14 22.35 0.20 -11.81 16 26 C -0.05 -1.85 9.78 22.55 0.22 -1.63 16 27 O -0.21 -4.17 10.78 -3.76 -0.04 -4.21 16 28 H 0.08 0.41 8.14 -2.39 -0.02 0.39 16 29 H 0.11 0.08 8.14 -2.39 -0.02 0.06 16 30 H 0.11 0.17 8.14 -2.39 -0.02 0.15 16 31 H 0.21 1.88 8.06 -2.91 -0.02 1.86 16 32 H 0.10 2.45 8.14 -2.39 -0.02 2.44 16 33 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 34 H 0.41 5.98 8.44 -92.70 -0.78 5.20 16 35 H 0.17 1.64 8.06 -2.91 -0.02 1.62 16 36 H 0.17 2.31 8.06 -2.91 -0.02 2.28 16 37 H 0.12 4.16 7.46 -2.91 -0.02 4.13 16 38 H 0.10 4.98 8.06 -2.91 -0.02 4.96 16 39 H 0.27 15.87 8.31 -92.71 -0.77 15.10 16 40 H 0.12 5.62 5.62 -2.91 -0.02 5.60 16 41 H 0.15 4.20 8.06 -2.91 -0.02 4.18 16 Total: -1.00 -86.74 362.31 2.46 -84.29 By element: Atomic # 1 Polarization: 25.50 SS G_CDS: 0.30 Total: 25.80 kcal Atomic # 6 Polarization: -33.13 SS G_CDS: 6.17 Total: -26.96 kcal Atomic # 7 Polarization: -83.77 SS G_CDS: -5.75 Total: -89.52 kcal Atomic # 8 Polarization: -39.68 SS G_CDS: -0.29 Total: -39.97 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.36 kcal Total: -86.74 2.46 -84.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493149852.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.375 kcal (2) G-P(sol) polarization free energy of solvation -86.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds